Wall clock time and date at job start Mon Mar 30 2020 06:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47322 * 2 1 4 4 C 1.37928 * 120.06218 * 265.00232 * 3 2 1 5 5 C 1.37743 * 120.76514 * 179.72502 * 4 3 2 6 6 C 1.41394 * 120.90474 * 0.02562 * 5 4 3 7 7 C 1.45464 * 129.16786 * 179.97438 * 6 5 4 8 8 C 1.31870 * 114.88240 * 180.02562 * 7 6 5 9 9 C 1.50700 * 124.33141 * 179.97438 * 8 7 6 10 10 O 1.42900 * 109.47265 * 89.99833 * 9 8 7 11 11 S 1.75303 * 111.33270 * 359.97438 * 8 7 6 12 12 C 1.39386 * 118.98872 * 359.97438 * 6 5 4 13 13 C 1.40373 * 120.05432 * 84.72337 * 3 2 1 14 14 C 1.40935 * 120.11789 * 0.25506 * 13 3 2 15 15 H 1.07999 * 119.99709 * 39.08443 * 14 13 3 16 16 C 1.39924 * 119.99927 * 219.07973 * 14 13 3 17 17 N 1.30875 * 120.00164 * 20.61960 * 16 14 13 18 18 Si 1.86803 * 120.00106 * 200.61761 * 16 14 13 19 19 H 1.48503 * 109.46732 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46930 * 120.00137 * 18 16 14 21 21 H 1.48490 * 109.47099 * 240.00286 * 18 16 14 22 22 H 1.08993 * 109.46822 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46854 * 299.99710 * 1 2 3 24 24 H 1.09000 * 109.46631 * 60.00136 * 1 2 3 25 25 H 1.09004 * 109.46947 * 239.99823 * 2 1 3 26 26 H 1.09004 * 109.46860 * 120.00581 * 2 1 3 27 27 H 1.07997 * 119.61362 * 359.73908 * 4 3 2 28 28 H 1.08000 * 119.54934 * 179.97438 * 5 4 3 29 29 H 1.07993 * 122.55686 * 359.97386 * 7 6 5 30 30 H 1.09003 * 109.46681 * 209.99532 * 9 8 7 31 31 H 1.09002 * 109.46738 * 329.99390 * 9 8 7 32 32 H 0.96704 * 113.99880 * 180.02562 * 10 9 8 33 33 H 0.96999 * 119.99614 * 181.94932 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0375 -1.1892 5 6 2.8160 3.3375 -1.2065 6 6 2.9590 4.0729 -0.0074 7 6 3.4185 5.4399 0.1827 8 6 3.4425 5.8478 1.4365 9 6 3.8814 7.2212 1.8752 10 8 2.7534 8.0983 1.8939 11 16 2.8987 4.5881 2.5276 12 6 2.6311 3.4630 1.2023 13 6 2.1614 2.1208 1.2099 14 6 1.8268 1.4956 2.4278 15 1 2.0760 0.4570 2.5879 16 6 1.1720 2.2205 3.4296 17 7 0.5171 3.3122 3.1256 18 14 1.2323 1.6302 5.2008 19 1 2.0315 0.3811 5.2793 20 1 1.8614 2.6740 6.0493 21 1 -0.1476 1.3666 5.6819 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2596 1.4950 -2.1175 28 1 3.0679 3.8011 -2.1489 29 1 3.7180 6.0721 -0.6400 30 1 4.3128 7.1628 2.8745 31 1 4.6277 7.6037 1.1789 32 1 2.9624 9.0021 2.1673 33 1 0.0870 3.8300 3.8240 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396303815.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:00 Heat of formation + Delta-G solvation = -29.930803 kcal Electronic energy + Delta-G solvation = -17290.326371 eV Core-core repulsion = 14599.293439 eV Total energy + Delta-G solvation = -2691.032932 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.22308 -36.84118 -34.90673 -33.51951 -31.84416 -29.74483 -28.51546 -25.40527 -25.11552 -22.46360 -21.61221 -19.94402 -18.90535 -17.39756 -17.20891 -15.82026 -15.18522 -14.72402 -14.55934 -13.82339 -13.59719 -13.38084 -12.82040 -12.53968 -12.33379 -12.12818 -11.95086 -11.60488 -11.22402 -11.15159 -10.90310 -10.77003 -10.61564 -10.23898 -10.05369 -9.77864 -9.71602 -9.47917 -9.35401 -8.83620 -8.15033 -7.13067 -6.91748 -6.13516 -4.44412 1.89086 2.75047 2.83911 3.03518 3.09709 3.13569 3.45205 3.53708 3.94864 4.57804 4.78176 5.33238 5.36567 5.49887 5.64012 5.95380 5.99964 6.13757 6.20392 6.41169 6.45758 6.58722 6.62295 6.80653 6.87892 6.92170 7.11667 7.19546 7.31744 7.39928 7.59825 7.73757 7.82457 7.93829 8.13726 8.41384 8.72251 8.82736 10.15170 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016273 B = 0.010231 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.177913 B = 2736.140902 C = 4150.156370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C -0.177 4.177 4 C -0.084 4.084 5 C -0.196 4.196 6 C -0.065 4.065 7 C -0.108 4.108 8 C -0.217 4.217 9 C 0.154 3.846 10 O -0.564 6.564 11 S 0.126 5.874 12 C -0.156 4.156 13 C 0.157 3.843 14 C -0.471 4.471 15 H 0.086 0.914 16 C 0.073 3.927 17 N -0.770 5.770 18 Si 0.891 3.109 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.274 1.274 22 H 0.036 0.964 23 H 0.065 0.935 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.372 0.628 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.904 3.128 -0.556 5.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.182 4.182 4 C -0.104 4.104 5 C -0.217 4.217 6 C -0.072 4.072 7 C -0.142 4.142 8 C -0.333 4.333 9 C 0.076 3.924 10 O -0.368 6.368 11 S 0.394 5.606 12 C -0.273 4.273 13 C 0.151 3.849 14 C -0.501 4.501 15 H 0.104 0.896 16 C -0.146 4.146 17 N -0.395 5.395 18 Si 0.715 3.285 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.199 1.199 22 H 0.055 0.945 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.218 0.782 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.266 2.744 0.969 4.375 hybrid contribution 0.319 0.573 -0.628 0.908 sum 3.585 3.317 0.342 4.896 Atomic orbital electron populations 1.21648 0.96392 0.99348 1.02160 1.20056 0.95060 0.93725 1.00031 1.19608 1.09469 0.97009 0.92067 1.20259 0.99443 0.94340 0.96325 1.20157 1.11869 0.95189 0.94523 1.18938 1.02057 0.92312 0.93881 1.20716 1.02771 0.95077 0.95586 1.23875 1.10349 0.99791 0.99273 1.20351 0.87147 0.86037 0.98909 1.86678 1.35096 1.23490 1.91576 1.83722 1.65346 1.02686 1.08860 1.22642 1.10651 1.00093 0.93914 1.16693 0.87858 0.87771 0.92547 1.19330 1.34064 0.98860 0.97843 0.89617 1.25785 0.93714 0.94419 1.00730 1.69830 1.20963 1.12962 1.35732 0.86490 0.78981 0.80361 0.82699 1.18276 1.19378 1.19944 0.94541 0.91622 0.93971 0.93912 0.91938 0.88730 0.88876 0.86366 0.93225 0.92891 0.78226 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.90 37.16 0.37 -2.28 16 2 C -0.05 -1.04 5.58 -27.88 -0.16 -1.19 16 3 C -0.18 -4.16 5.19 -103.93 -0.54 -4.70 16 4 C -0.08 -1.87 9.60 -39.88 -0.38 -2.25 16 5 C -0.20 -4.44 10.10 -38.56 -0.39 -4.82 16 6 C -0.06 -1.57 6.04 -105.39 -0.64 -2.21 16 7 C -0.11 -2.34 10.22 -38.61 -0.39 -2.74 16 8 C -0.22 -4.57 6.01 -36.21 -0.22 -4.79 16 9 C 0.15 2.51 7.48 36.01 0.27 2.78 16 10 O -0.56 -9.19 13.64 -35.23 -0.48 -9.67 16 11 S 0.13 2.99 19.85 -107.50 -2.13 0.85 16 12 C -0.16 -4.04 5.74 -37.64 -0.22 -4.26 16 13 C 0.16 4.07 5.37 -106.55 -0.57 3.50 16 14 C -0.47 -12.01 7.86 -37.93 -0.30 -12.31 16 15 H 0.09 2.12 6.75 -52.49 -0.35 1.76 16 16 C 0.07 1.79 4.28 -17.33 -0.07 1.72 16 17 N -0.77 -19.86 10.69 55.55 0.59 -19.26 16 18 Si 0.89 18.69 29.61 -169.99 -5.03 13.66 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 1.42 7.92 -51.93 -0.41 1.01 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 26 H 0.06 1.27 6.63 -51.93 -0.34 0.93 16 27 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 28 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.37 3.70 9.12 45.56 0.42 4.12 16 33 H 0.29 6.85 8.30 -40.82 -0.34 6.52 16 LS Contribution 291.97 15.07 4.40 4.40 Total: -1.00 -29.45 291.97 -9.10 -38.55 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -3.21 Total: 5.03 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: -3.24 Total: -33.55 kcal Atomic # 7 Polarization: -19.86 SS G_CDS: 0.59 Total: -19.26 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.48 Total: -9.67 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.13 Total: 0.85 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.45 -9.10 -38.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303815.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.617 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds