Wall clock time and date at job start Mon Mar 30 2020 06:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47322 * 2 1 4 4 C 1.37928 * 120.06218 * 265.00232 * 3 2 1 5 5 C 1.37743 * 120.76514 * 179.72502 * 4 3 2 6 6 C 1.41394 * 120.90474 * 0.02562 * 5 4 3 7 7 C 1.45464 * 129.16786 * 179.97438 * 6 5 4 8 8 C 1.31870 * 114.88240 * 180.02562 * 7 6 5 9 9 C 1.50700 * 124.33141 * 179.97438 * 8 7 6 10 10 O 1.42900 * 109.47265 * 89.99833 * 9 8 7 11 11 S 1.75303 * 111.33270 * 359.97438 * 8 7 6 12 12 C 1.39386 * 118.98872 * 359.97438 * 6 5 4 13 13 C 1.40373 * 120.05432 * 84.72337 * 3 2 1 14 14 C 1.40935 * 120.11789 * 0.25506 * 13 3 2 15 15 H 1.07999 * 119.99709 * 39.08443 * 14 13 3 16 16 C 1.39924 * 119.99927 * 219.07973 * 14 13 3 17 17 N 1.30875 * 120.00164 * 20.61960 * 16 14 13 18 18 Si 1.86803 * 120.00106 * 200.61761 * 16 14 13 19 19 H 1.48503 * 109.46732 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46930 * 120.00137 * 18 16 14 21 21 H 1.48490 * 109.47099 * 240.00286 * 18 16 14 22 22 H 1.08993 * 109.46822 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46854 * 299.99710 * 1 2 3 24 24 H 1.09000 * 109.46631 * 60.00136 * 1 2 3 25 25 H 1.09004 * 109.46947 * 239.99823 * 2 1 3 26 26 H 1.09004 * 109.46860 * 120.00581 * 2 1 3 27 27 H 1.07997 * 119.61362 * 359.73908 * 4 3 2 28 28 H 1.08000 * 119.54934 * 179.97438 * 5 4 3 29 29 H 1.07993 * 122.55686 * 359.97386 * 7 6 5 30 30 H 1.09003 * 109.46681 * 209.99532 * 9 8 7 31 31 H 1.09002 * 109.46738 * 329.99390 * 9 8 7 32 32 H 0.96704 * 113.99880 * 180.02562 * 10 9 8 33 33 H 0.96999 * 119.99614 * 181.94932 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0375 -1.1892 5 6 2.8160 3.3375 -1.2065 6 6 2.9590 4.0729 -0.0074 7 6 3.4185 5.4399 0.1827 8 6 3.4425 5.8478 1.4365 9 6 3.8814 7.2212 1.8752 10 8 2.7534 8.0983 1.8939 11 16 2.8987 4.5881 2.5276 12 6 2.6311 3.4630 1.2023 13 6 2.1614 2.1208 1.2099 14 6 1.8268 1.4956 2.4278 15 1 2.0760 0.4570 2.5879 16 6 1.1720 2.2205 3.4296 17 7 0.5171 3.3122 3.1256 18 14 1.2323 1.6302 5.2008 19 1 2.0315 0.3811 5.2793 20 1 1.8614 2.6740 6.0493 21 1 -0.1476 1.3666 5.6819 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2596 1.4950 -2.1175 28 1 3.0679 3.8011 -2.1489 29 1 3.7180 6.0721 -0.6400 30 1 4.3128 7.1628 2.8745 31 1 4.6277 7.6037 1.1789 32 1 2.9624 9.0021 2.1673 33 1 0.0870 3.8300 3.8240 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396303815.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:00 Heat of formation + Delta-G solvation = -47.538370 kcal Electronic energy + Delta-G solvation = -17291.089892 eV Core-core repulsion = 14599.293439 eV Total energy + Delta-G solvation = -2691.796454 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95789 -38.18055 -36.51030 -35.31612 -33.44682 -31.55664 -30.08297 -27.20992 -26.65470 -24.10611 -23.35660 -21.61545 -20.58878 -19.18714 -18.41791 -17.57513 -16.89872 -16.27950 -16.21673 -15.47054 -15.09971 -14.91652 -14.52372 -14.22079 -13.95878 -13.75131 -13.54835 -13.33893 -12.92460 -12.73064 -12.53791 -12.46258 -12.26140 -11.89101 -11.62262 -11.50160 -11.20140 -11.10274 -10.99597 -10.60719 -9.95951 -8.89947 -8.74858 -7.94489 -6.33604 0.18669 0.95129 1.14460 1.34897 1.37376 1.47998 1.72982 1.77085 2.20857 2.76687 3.48707 3.57265 4.03513 4.25845 4.33503 4.37367 4.46729 4.54140 4.62172 4.76610 4.82417 4.98856 5.03687 5.11942 5.21415 5.26203 5.33253 5.56867 5.59669 5.67711 5.84081 5.95026 6.12744 6.35824 6.56136 6.89736 6.93240 6.96890 8.33949 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016273 B = 0.010231 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.177913 B = 2736.140902 C = 4150.156370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.050 4.050 3 C -0.188 4.188 4 C -0.092 4.092 5 C -0.197 4.197 6 C -0.090 4.090 7 C -0.121 4.121 8 C -0.210 4.210 9 C 0.156 3.844 10 O -0.587 6.587 11 S 0.087 5.913 12 C -0.190 4.190 13 C 0.122 3.878 14 C -0.493 4.493 15 H 0.081 0.919 16 C 0.042 3.958 17 N -0.803 5.803 18 Si 0.947 3.053 19 H -0.256 1.256 20 H -0.266 1.266 21 H -0.267 1.267 22 H 0.067 0.933 23 H 0.030 0.970 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.149 0.851 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.400 0.600 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.534 3.595 -1.427 5.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.112 4.112 5 C -0.219 4.219 6 C -0.097 4.097 7 C -0.153 4.153 8 C -0.326 4.326 9 C 0.077 3.923 10 O -0.397 6.397 11 S 0.354 5.646 12 C -0.307 4.307 13 C 0.117 3.883 14 C -0.523 4.523 15 H 0.099 0.901 16 C -0.174 4.174 17 N -0.429 5.429 18 Si 0.769 3.231 19 H -0.179 1.179 20 H -0.191 1.191 21 H -0.192 1.192 22 H 0.086 0.914 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.140 0.860 29 H 0.167 0.833 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.250 0.750 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.905 3.226 0.087 5.066 hybrid contribution 0.156 0.477 -0.490 0.702 sum 4.060 3.703 -0.404 5.510 Atomic orbital electron populations 1.21550 0.95682 1.00892 1.00549 1.20098 0.95573 0.92078 1.00970 1.20118 1.08740 0.98468 0.91993 1.20655 0.98746 0.94556 0.97196 1.20609 1.10612 0.95437 0.95221 1.19482 1.02387 0.93814 0.94047 1.20994 1.03042 0.94403 0.96856 1.24387 1.08703 1.01207 0.98310 1.20452 0.87460 0.83706 1.00640 1.86587 1.35623 1.25550 1.91935 1.83614 1.66404 1.04280 1.10285 1.22957 1.11853 1.00737 0.95113 1.17123 0.88843 0.88666 0.93706 1.19428 1.35163 0.98857 0.98851 0.90086 1.26376 0.92923 0.94321 1.03818 1.69894 1.22120 1.14234 1.36690 0.85642 0.79168 0.79918 0.78400 1.17903 1.19086 1.19224 0.91394 0.95072 0.93628 0.91035 0.92786 0.85410 0.86047 0.83295 0.91722 0.89344 0.74974 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 9.90 71.98 0.71 -4.15 16 2 C -0.05 -1.97 5.58 29.85 0.17 -1.80 16 3 C -0.19 -8.87 5.19 -19.42 -0.10 -8.97 16 4 C -0.09 -3.96 9.60 22.08 0.21 -3.75 16 5 C -0.20 -8.68 10.10 22.93 0.23 -8.45 16 6 C -0.09 -4.35 6.04 -20.36 -0.12 -4.47 16 7 C -0.12 -5.07 10.22 23.31 0.24 -4.83 16 8 C -0.21 -8.62 6.01 24.87 0.15 -8.47 16 9 C 0.16 4.65 7.48 71.24 0.53 5.19 16 10 O -0.59 -17.70 13.64 -148.98 -2.03 -19.74 16 11 S 0.09 4.21 19.85 -56.49 -1.12 3.08 16 12 C -0.19 -10.05 5.74 23.53 0.14 -9.91 16 13 C 0.12 6.50 5.37 -21.12 -0.11 6.38 16 14 C -0.49 -25.99 7.86 23.34 0.18 -25.81 16 15 H 0.08 4.16 6.75 -2.91 -0.02 4.14 16 16 C 0.04 2.12 4.28 85.24 0.36 2.48 16 17 N -0.80 -42.84 10.69 21.83 0.23 -42.61 16 18 Si 0.95 39.14 29.61 68.60 2.03 41.18 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.03 1.36 7.92 -2.39 -0.02 1.34 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 2.39 8.05 -2.38 -0.02 2.37 16 26 H 0.05 2.20 6.63 -2.38 -0.02 2.19 16 27 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 28 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 29 H 0.15 5.20 8.06 -2.91 -0.02 5.17 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.40 6.76 9.12 -74.05 -0.68 6.08 16 33 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 Total: -1.00 -65.17 291.97 2.15 -63.01 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.45 Total: 21.62 kcal Atomic # 6 Polarization: -69.14 SS G_CDS: 2.59 Total: -66.55 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.23 Total: -42.61 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -2.03 Total: -19.74 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.12 Total: 3.08 kcal Total: -65.17 2.15 -63.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303815.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.475 kcal (2) G-P(sol) polarization free energy of solvation -65.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds