Wall clock time and date at job start Mon Mar 30 2020 06:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.46954 * 2 1 4 4 C 1.35706 * 119.58638 * 264.77195 * 3 2 1 5 5 C 1.41125 * 120.10408 * 179.71722 * 4 3 2 6 6 C 1.41279 * 120.05979 * 180.27681 * 5 4 3 7 7 H 1.07999 * 119.99814 * 24.85400 * 6 5 4 8 8 C 1.39850 * 120.00063 * 204.85192 * 6 5 4 9 9 N 1.30898 * 120.00186 * 18.03466 * 8 6 5 10 10 Si 1.86806 * 119.99969 * 198.03125 * 8 6 5 11 11 H 1.48501 * 109.46832 * 90.00393 * 10 8 6 12 12 H 1.48497 * 109.47148 * 210.00154 * 10 8 6 13 13 H 1.48497 * 109.47039 * 330.00466 * 10 8 6 14 14 C 1.39936 * 119.88008 * 0.26074 * 5 4 3 15 15 C 1.40482 * 119.98397 * 359.97438 * 14 5 4 16 16 C 1.45580 * 129.19553 * 179.97438 * 15 14 5 17 17 C 1.50702 * 122.55292 * 0.02605 * 16 15 14 18 18 O 1.42904 * 109.47163 * 180.02562 * 17 16 15 19 19 C 1.31690 * 114.89143 * 179.97438 * 16 15 14 20 20 S 1.75256 * 111.52408 * 0.02562 * 19 16 15 21 21 C 1.40184 * 119.03683 * 359.97438 * 15 14 5 22 22 H 1.09006 * 109.47238 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47491 * 299.99622 * 1 2 3 24 24 H 1.08997 * 109.47653 * 59.99995 * 1 2 3 25 25 H 1.09002 * 109.46764 * 240.00218 * 2 1 3 26 26 H 1.09006 * 109.47456 * 119.99969 * 2 1 3 27 27 H 1.08004 * 119.94676 * 359.95380 * 4 3 2 28 28 H 0.97002 * 120.00317 * 179.97438 * 9 8 6 29 29 H 1.08005 * 120.00647 * 179.97438 * 14 5 4 30 30 H 1.08997 * 109.47190 * 299.99796 * 17 16 15 31 31 H 1.09001 * 109.47468 * 59.99659 * 17 16 15 32 32 H 0.96698 * 114.00030 * 180.02562 * 18 17 16 33 33 H 1.08004 * 124.23843 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3570 2.0167 -1.1752 5 6 2.8228 3.3488 -1.1885 6 6 3.1550 3.9702 -2.4130 7 1 2.7041 3.6271 -3.3324 8 6 4.0677 5.0296 -2.4346 9 7 4.8716 5.2217 -1.4196 10 14 4.1395 6.1706 -3.9120 11 1 3.2053 7.3064 -3.7060 12 1 5.5220 6.6892 -4.0701 13 1 3.7484 5.4232 -5.1341 14 6 2.9546 4.0532 0.0135 15 6 2.6230 3.4341 1.2301 16 6 2.6827 3.9710 2.5819 17 6 3.1449 5.3747 2.8772 18 8 3.0933 5.6067 4.2864 19 6 2.3011 3.1370 3.5270 20 16 1.8225 1.5876 2.8624 21 6 2.1616 2.1105 1.2164 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2551 1.4719 -2.1022 28 1 5.5049 5.9563 -1.4347 29 1 3.3113 5.0727 0.0057 30 1 4.1688 5.5016 2.5258 31 1 2.4950 6.0861 2.3675 32 1 3.3774 6.4927 4.5498 33 1 2.2858 3.3775 4.5798 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396303834.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:29 Heat of formation + Delta-G solvation = -33.657036 kcal Electronic energy + Delta-G solvation = -17084.197562 eV Core-core repulsion = 14393.003048 eV Total energy + Delta-G solvation = -2691.194514 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.52008 -36.85538 -34.58175 -34.34654 -31.92034 -29.10474 -28.06264 -26.61905 -25.11887 -22.92965 -21.61687 -20.34418 -18.43919 -17.33211 -16.81946 -16.21713 -15.26998 -14.69596 -14.56456 -14.12352 -13.85134 -13.65624 -13.18299 -12.72344 -12.45455 -12.07170 -11.78716 -11.59776 -11.37855 -11.32260 -11.04622 -10.93769 -10.69668 -10.49302 -10.19000 -10.08663 -9.76581 -9.68549 -9.45138 -9.09691 -8.11937 -7.38738 -6.85602 -6.64520 -4.41923 1.92901 2.61028 2.63213 3.01525 3.04421 3.05530 3.09435 3.38285 3.85749 4.46213 4.49942 5.45182 5.52713 5.57388 5.66145 5.72142 5.90309 5.94169 5.97669 6.23309 6.25860 6.34069 6.48465 6.63545 6.69541 6.85104 6.89843 7.07095 7.19396 7.43635 7.52920 7.71852 7.85345 7.89702 8.07294 8.48410 8.76032 8.78897 10.08609 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.008229 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.974483 B = 3401.630820 C = 4971.878442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C -0.032 4.032 4 C -0.176 4.176 5 C 0.109 3.891 6 C -0.457 4.457 7 H 0.080 0.920 8 C 0.076 3.924 9 N -0.790 5.790 10 Si 0.908 3.092 11 H -0.267 1.267 12 H -0.278 1.278 13 H -0.262 1.262 14 C -0.147 4.147 15 C -0.044 4.044 16 C -0.091 4.091 17 C 0.138 3.862 18 O -0.575 6.575 19 C -0.181 4.181 20 S -0.004 6.004 21 C -0.218 4.218 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.281 0.719 29 H 0.123 0.877 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.377 0.623 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.849 -0.406 4.158 5.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.037 4.037 4 C -0.197 4.197 5 C 0.106 3.894 6 C -0.487 4.487 7 H 0.098 0.902 8 C -0.142 4.142 9 N -0.415 5.415 10 Si 0.733 3.267 11 H -0.192 1.192 12 H -0.203 1.203 13 H -0.185 1.185 14 C -0.170 4.170 15 C -0.050 4.050 16 C -0.104 4.104 17 C 0.059 3.941 18 O -0.380 6.380 19 C -0.315 4.315 20 S 0.256 5.744 21 C -0.332 4.332 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.223 0.777 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.392 -2.220 4.915 6.371 hybrid contribution 0.958 2.468 -1.223 2.916 sum -2.434 0.248 3.692 4.429 Atomic orbital electron populations 1.21694 0.95526 1.00479 1.02235 1.20485 0.95699 0.94241 1.01457 1.18458 0.99896 0.94210 0.91098 1.20652 1.08196 0.95592 0.95246 1.17377 0.88974 0.89933 0.93166 1.19530 1.21529 1.13270 0.94386 0.90151 1.25900 0.93649 0.97188 0.97505 1.69855 1.14286 1.26641 1.30754 0.86306 0.78212 0.80469 0.81753 1.19233 1.20278 1.18545 1.21094 1.06557 1.00038 0.89277 1.18803 1.01374 0.92816 0.91986 1.19555 1.02931 0.95398 0.92523 1.20565 0.99856 0.93264 0.80441 1.86411 1.90642 1.37245 1.23709 1.24417 1.07904 0.96793 1.02337 1.83267 1.74796 1.15877 1.00447 1.21623 1.18655 0.98481 0.94435 0.93390 0.92608 0.92683 0.91771 0.92249 0.87954 0.90785 0.85952 0.91996 0.92516 0.77723 0.82801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 37.16 0.37 -1.89 16 2 C -0.08 -1.46 5.86 -27.88 -0.16 -1.62 16 3 C -0.03 -0.71 5.12 -104.70 -0.54 -1.25 16 4 C -0.18 -4.14 9.30 -39.39 -0.37 -4.51 16 5 C 0.11 2.80 5.56 -107.01 -0.59 2.21 16 6 C -0.46 -11.59 9.03 -37.82 -0.34 -11.93 16 7 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 8 C 0.08 1.82 5.12 -17.35 -0.09 1.73 16 9 N -0.79 -19.57 10.98 55.54 0.61 -18.96 16 10 Si 0.91 17.93 29.60 -169.99 -5.03 12.90 16 11 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 12 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 13 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 14 C -0.15 -3.74 8.52 -38.10 -0.32 -4.07 16 15 C -0.04 -1.06 6.01 -105.40 -0.63 -1.69 16 16 C -0.09 -1.92 5.97 -103.57 -0.62 -2.54 16 17 C 0.14 2.46 7.34 36.01 0.26 2.72 16 18 O -0.57 -8.80 12.48 -35.23 -0.44 -9.24 16 19 C -0.18 -3.62 10.26 28.86 0.30 -3.33 16 20 S 0.00 -0.09 22.63 -107.50 -2.43 -2.52 16 21 C -0.22 -5.00 6.33 -38.03 -0.24 -5.24 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.06 8.01 -51.93 -0.42 0.65 16 26 H 0.06 1.04 7.76 -51.93 -0.40 0.64 16 27 H 0.10 2.23 8.03 -52.48 -0.42 1.80 16 28 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 29 H 0.12 3.15 6.14 -52.48 -0.32 2.83 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.38 3.68 9.12 45.56 0.42 4.10 16 33 H 0.15 2.80 7.40 -52.48 -0.39 2.41 16 LS Contribution 294.68 15.07 4.44 4.44 Total: -1.00 -27.93 294.68 -9.03 -36.97 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.20 Total: 7.80 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: -2.98 Total: -31.40 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.44 Total: -9.24 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.43 Total: -2.52 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.93 -9.03 -36.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303834.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.308 kcal (2) G-P(sol) polarization free energy of solvation -27.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds