Wall clock time and date at job start Mon Mar 30 2020 06:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.46954 * 2 1 4 4 C 1.35706 * 119.58638 * 264.77195 * 3 2 1 5 5 C 1.41125 * 120.10408 * 179.71722 * 4 3 2 6 6 C 1.41279 * 120.05979 * 180.27681 * 5 4 3 7 7 H 1.07999 * 119.99814 * 24.85400 * 6 5 4 8 8 C 1.39850 * 120.00063 * 204.85192 * 6 5 4 9 9 N 1.30898 * 120.00186 * 18.03466 * 8 6 5 10 10 Si 1.86806 * 119.99969 * 198.03125 * 8 6 5 11 11 H 1.48501 * 109.46832 * 90.00393 * 10 8 6 12 12 H 1.48497 * 109.47148 * 210.00154 * 10 8 6 13 13 H 1.48497 * 109.47039 * 330.00466 * 10 8 6 14 14 C 1.39936 * 119.88008 * 0.26074 * 5 4 3 15 15 C 1.40482 * 119.98397 * 359.97438 * 14 5 4 16 16 C 1.45580 * 129.19553 * 179.97438 * 15 14 5 17 17 C 1.50702 * 122.55292 * 0.02605 * 16 15 14 18 18 O 1.42904 * 109.47163 * 180.02562 * 17 16 15 19 19 C 1.31690 * 114.89143 * 179.97438 * 16 15 14 20 20 S 1.75256 * 111.52408 * 0.02562 * 19 16 15 21 21 C 1.40184 * 119.03683 * 359.97438 * 15 14 5 22 22 H 1.09006 * 109.47238 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47491 * 299.99622 * 1 2 3 24 24 H 1.08997 * 109.47653 * 59.99995 * 1 2 3 25 25 H 1.09002 * 109.46764 * 240.00218 * 2 1 3 26 26 H 1.09006 * 109.47456 * 119.99969 * 2 1 3 27 27 H 1.08004 * 119.94676 * 359.95380 * 4 3 2 28 28 H 0.97002 * 120.00317 * 179.97438 * 9 8 6 29 29 H 1.08005 * 120.00647 * 179.97438 * 14 5 4 30 30 H 1.08997 * 109.47190 * 299.99796 * 17 16 15 31 31 H 1.09001 * 109.47468 * 59.99659 * 17 16 15 32 32 H 0.96698 * 114.00030 * 180.02562 * 18 17 16 33 33 H 1.08004 * 124.23843 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3570 2.0167 -1.1752 5 6 2.8228 3.3488 -1.1885 6 6 3.1550 3.9702 -2.4130 7 1 2.7041 3.6271 -3.3324 8 6 4.0677 5.0296 -2.4346 9 7 4.8716 5.2217 -1.4196 10 14 4.1395 6.1706 -3.9120 11 1 3.2053 7.3064 -3.7060 12 1 5.5220 6.6892 -4.0701 13 1 3.7484 5.4232 -5.1341 14 6 2.9546 4.0532 0.0135 15 6 2.6230 3.4341 1.2301 16 6 2.6827 3.9710 2.5819 17 6 3.1449 5.3747 2.8772 18 8 3.0933 5.6067 4.2864 19 6 2.3011 3.1370 3.5270 20 16 1.8225 1.5876 2.8624 21 6 2.1616 2.1105 1.2164 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2551 1.4719 -2.1022 28 1 5.5049 5.9563 -1.4347 29 1 3.3113 5.0727 0.0057 30 1 4.1688 5.5016 2.5258 31 1 2.4950 6.0861 2.3675 32 1 3.3774 6.4927 4.5498 33 1 2.2858 3.3775 4.5798 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396303834.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:29 Heat of formation + Delta-G solvation = -49.386269 kcal Electronic energy + Delta-G solvation = -17084.879632 eV Core-core repulsion = 14393.003048 eV Total energy + Delta-G solvation = -2691.876585 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21972 -38.26678 -36.19967 -35.96241 -33.57698 -30.80173 -29.72845 -28.17516 -26.84366 -24.44242 -23.32555 -22.05684 -20.03372 -18.83499 -18.56829 -17.76624 -16.96978 -16.33061 -15.95412 -15.76827 -15.35005 -15.19798 -14.73182 -14.27741 -14.08752 -13.73882 -13.29780 -13.11616 -13.00863 -12.84395 -12.78502 -12.41561 -12.28561 -11.92800 -11.81086 -11.65519 -11.44567 -11.18451 -11.15213 -10.83527 -9.83355 -9.17834 -8.64884 -8.32675 -6.30761 0.21201 0.84356 1.00833 1.38081 1.39927 1.44928 1.51841 1.67032 2.20332 2.65900 3.24186 3.61698 4.01657 4.08450 4.20040 4.29205 4.50916 4.54034 4.55893 4.66440 4.79064 4.94294 4.98285 5.02860 5.08672 5.25842 5.28657 5.38125 5.48449 5.64913 5.76542 5.90890 6.05803 6.24237 6.62466 6.86295 6.89737 6.93859 8.31591 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.008229 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.974483 B = 3401.630820 C = 4971.878442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 C -0.033 4.033 4 C -0.195 4.195 5 C 0.082 3.918 6 C -0.491 4.491 7 H 0.080 0.920 8 C 0.037 3.963 9 N -0.820 5.820 10 Si 0.980 3.020 11 H -0.263 1.263 12 H -0.269 1.269 13 H -0.258 1.258 14 C -0.174 4.174 15 C -0.060 4.060 16 C -0.117 4.117 17 C 0.149 3.851 18 O -0.578 6.578 19 C -0.176 4.176 20 S 0.043 5.957 21 C -0.244 4.244 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.112 0.888 28 H 0.289 0.711 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.402 0.598 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 -0.839 4.839 5.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.117 4.117 3 C -0.037 4.037 4 C -0.216 4.216 5 C 0.079 3.921 6 C -0.521 4.521 7 H 0.098 0.902 8 C -0.178 4.178 9 N -0.446 5.446 10 Si 0.801 3.199 11 H -0.188 1.188 12 H -0.193 1.193 13 H -0.181 1.181 14 C -0.197 4.197 15 C -0.066 4.066 16 C -0.130 4.130 17 C 0.069 3.931 18 O -0.386 6.386 19 C -0.309 4.309 20 S 0.304 5.696 21 C -0.358 4.358 22 H 0.099 0.901 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.252 0.748 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.938 -2.652 5.621 7.357 hybrid contribution 1.105 2.523 -1.281 3.037 sum -2.833 -0.130 4.340 5.184 Atomic orbital electron populations 1.21650 0.93708 1.02424 1.01556 1.20557 0.97167 0.91544 1.02460 1.18916 0.98276 0.96122 0.90358 1.20842 1.08977 0.95262 0.96471 1.17752 0.89663 0.91096 0.93638 1.19782 1.22840 1.15026 0.94420 0.90172 1.26719 0.92691 0.98019 1.00410 1.69912 1.14763 1.27328 1.32587 0.85224 0.78495 0.78137 0.78023 1.18775 1.19336 1.18131 1.21013 1.08667 0.99795 0.90196 1.19170 1.00947 0.93636 0.92846 1.19792 1.04239 0.97472 0.91530 1.20313 0.99341 0.91606 0.81805 1.86335 1.90812 1.39616 1.21886 1.24762 1.06328 0.96624 1.03186 1.82985 1.73936 1.15193 0.97437 1.22120 1.18350 0.98638 0.96737 0.90116 0.93537 0.93132 0.90399 0.91570 0.87009 0.90080 0.87383 0.92614 0.92220 0.74794 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.89 71.98 0.71 -3.30 16 2 C -0.08 -2.73 5.86 29.85 0.17 -2.55 16 3 C -0.03 -1.43 5.12 -19.92 -0.10 -1.53 16 4 C -0.19 -9.39 9.30 22.39 0.21 -9.18 16 5 C 0.08 4.39 5.56 -21.41 -0.12 4.27 16 6 C -0.49 -25.81 9.03 23.41 0.21 -25.60 16 7 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 8 C 0.04 1.82 5.12 85.22 0.44 2.26 16 9 N -0.82 -41.86 10.98 21.81 0.24 -41.62 16 10 Si 0.98 37.15 29.60 68.60 2.03 39.18 16 11 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 12 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 13 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 14 C -0.17 -9.24 8.52 23.23 0.20 -9.04 16 15 C -0.06 -2.92 6.01 -20.37 -0.12 -3.05 16 16 C -0.12 -4.92 5.97 -18.65 -0.11 -5.03 16 17 C 0.15 5.24 7.34 71.24 0.52 5.76 16 18 O -0.58 -16.51 12.48 -148.98 -1.86 -18.37 16 19 C -0.18 -6.71 10.26 67.14 0.69 -6.02 16 20 S 0.04 1.64 22.63 -56.49 -1.28 0.36 16 21 C -0.24 -11.16 6.33 23.28 0.15 -11.02 16 22 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.08 2.44 8.01 -2.39 -0.02 2.42 16 26 H 0.07 2.17 7.76 -2.38 -0.02 2.15 16 27 H 0.11 4.97 8.03 -2.91 -0.02 4.95 16 28 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 29 H 0.11 5.88 6.14 -2.91 -0.02 5.87 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.40 6.91 9.12 -74.06 -0.68 6.23 16 33 H 0.18 5.88 7.40 -2.91 -0.02 5.86 16 Total: -1.00 -60.97 294.68 2.43 -58.53 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.46 Total: 25.95 kcal Atomic # 6 Polarization: -66.88 SS G_CDS: 2.84 Total: -64.04 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.24 Total: -41.62 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.86 Total: -18.37 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.28 Total: 0.36 kcal Total: -60.97 2.43 -58.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303834.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.146 kcal (2) G-P(sol) polarization free energy of solvation -60.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds