Wall clock time and date at job start Mon Mar 30 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47120 * 2 1 4 4 C 1.37642 * 119.81642 * 264.99989 * 3 2 1 5 5 C 1.38629 * 120.19262 * 180.02562 * 4 3 2 6 6 C 1.37467 * 120.26379 * 359.97438 * 5 4 3 7 7 C 1.40544 * 120.31720 * 0.02562 * 6 5 4 8 8 C 1.46648 * 129.54314 * 179.97438 * 7 6 5 9 9 C 1.40803 * 123.30043 * 359.72935 * 8 7 6 10 10 H 1.07991 * 119.99972 * 143.19637 * 9 8 7 11 11 C 1.39723 * 119.99499 * 323.19410 * 9 8 7 12 12 N 1.31063 * 120.00345 * 339.31205 * 11 9 8 13 13 Si 1.86803 * 119.99733 * 159.31406 * 11 9 8 14 14 H 1.48506 * 109.47132 * 89.99878 * 13 11 9 15 15 H 1.48500 * 109.47161 * 209.99902 * 13 11 9 16 16 H 1.48504 * 109.47125 * 329.99826 * 13 11 9 17 17 C 1.36443 * 113.39931 * 179.97438 * 8 7 6 18 18 C 1.50699 * 124.01199 * 179.97438 * 17 8 7 19 19 O 1.42897 * 109.47353 * 89.20024 * 18 17 8 20 20 S 1.69978 * 111.96679 * 359.97438 * 17 8 7 21 21 C 1.39387 * 119.24073 * 359.97418 * 7 6 5 22 22 H 1.09002 * 109.47024 * 299.99614 * 1 2 3 23 23 H 1.08996 * 109.47286 * 59.99714 * 1 2 3 24 24 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47743 * 240.00343 * 2 1 3 26 26 H 1.09001 * 109.47304 * 119.99801 * 2 1 3 27 27 H 1.08000 * 119.90870 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.86790 * 179.97438 * 5 4 3 29 29 H 1.08008 * 119.84184 * 179.97438 * 6 5 4 30 30 H 0.97007 * 119.99944 * 177.39077 * 12 11 9 31 31 H 1.09004 * 109.46741 * 209.19802 * 18 17 8 32 32 H 1.09006 * 109.47388 * 329.19410 * 18 17 8 33 33 H 0.96694 * 114.00476 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3585 2.0314 -1.1897 5 6 2.8219 3.3379 -1.1987 6 6 2.9582 4.0328 -0.0204 7 6 2.6298 3.4252 1.2036 8 6 2.6966 3.9695 2.5637 9 6 3.1378 5.2749 2.8531 10 1 2.6684 5.8406 3.6443 11 6 4.1830 5.8384 2.1167 12 7 5.0122 5.0655 1.4588 13 14 4.3986 7.6933 2.0699 14 1 5.2855 8.1168 3.1832 15 1 5.0074 8.0884 0.7744 16 1 3.0743 8.3494 2.2151 17 6 2.2942 3.0851 3.5216 18 6 2.2675 3.3941 4.9963 19 8 1.0008 3.9578 5.3421 20 16 1.8267 1.5936 2.8538 21 6 2.1643 2.1114 1.2083 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2533 1.4911 -2.1189 28 1 3.0767 3.8117 -2.1351 29 1 3.3202 5.0503 -0.0354 30 1 5.7148 5.4579 0.9170 31 1 2.4234 2.4759 5.5628 32 1 3.0587 4.1056 5.2329 33 1 0.9123 4.1815 6.2786 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396303926.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:54 Heat of formation + Delta-G solvation = -31.663927 kcal Electronic energy + Delta-G solvation = -17356.278571 eV Core-core repulsion = 14665.170484 eV Total energy + Delta-G solvation = -2691.108086 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.67825 -36.29677 -34.94498 -33.08347 -32.49576 -29.22617 -28.48292 -26.77251 -24.37389 -23.03101 -21.80913 -19.84700 -19.39509 -16.59823 -16.50649 -16.27827 -15.23753 -14.76009 -14.63211 -14.09791 -13.62196 -13.32044 -12.93445 -12.77084 -12.48120 -12.31745 -11.98973 -11.52790 -11.41591 -11.14188 -10.98465 -10.80968 -10.64009 -10.57456 -10.43372 -9.85832 -9.65218 -9.44164 -9.06800 -8.91984 -8.20976 -7.30406 -6.90785 -6.40234 -4.39518 1.94570 2.21699 2.90444 2.92104 3.05202 3.11657 3.58094 3.70186 3.95802 4.61567 5.08389 5.31243 5.40798 5.51070 5.75288 5.76861 5.87538 5.99887 6.12511 6.13372 6.18030 6.32140 6.41849 6.56122 6.58351 6.71414 6.88182 7.03943 7.09668 7.28430 7.34875 7.46492 7.88517 7.95930 8.32585 8.47118 8.64806 8.83086 10.14307 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.009420 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.180009 B = 2971.561252 C = 4251.606560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.075 4.075 4 C -0.118 4.118 5 C -0.155 4.155 6 C -0.036 4.036 7 C -0.041 4.041 8 C 0.142 3.858 9 C -0.451 4.451 10 H 0.085 0.915 11 C 0.081 3.919 12 N -0.790 5.790 13 Si 0.897 3.103 14 H -0.269 1.269 15 H -0.275 1.275 16 H -0.260 1.260 17 C -0.389 4.389 18 C 0.187 3.813 19 O -0.574 6.574 20 S 0.046 5.954 21 C -0.127 4.127 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.281 0.719 31 H 0.024 0.976 32 H 0.052 0.948 33 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 -3.867 -1.910 5.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.080 4.080 4 C -0.138 4.138 5 C -0.177 4.177 6 C -0.056 4.056 7 C -0.050 4.050 8 C 0.132 3.868 9 C -0.484 4.484 10 H 0.103 0.897 11 C -0.137 4.137 12 N -0.416 5.416 13 Si 0.721 3.279 14 H -0.194 1.194 15 H -0.200 1.200 16 H -0.184 1.184 17 C -0.505 4.505 18 C 0.109 3.891 19 O -0.378 6.378 20 S 0.309 5.691 21 C -0.242 4.242 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.263 -5.253 -1.919 6.474 hybrid contribution 1.002 2.378 -0.119 2.583 sum -2.261 -2.874 -2.038 4.186 Atomic orbital electron populations 1.21716 0.95239 1.00879 1.02375 1.20441 0.95916 0.93314 1.01942 1.19045 1.02415 0.95430 0.91134 1.20565 1.01888 0.95363 0.96014 1.20757 1.04237 0.95203 0.97484 1.20981 0.94599 0.99698 0.90306 1.19455 0.98576 0.92246 0.94743 1.17277 0.89675 0.92568 0.87238 1.18949 1.14589 0.98011 1.16825 0.89737 1.25836 0.94319 1.00026 0.93569 1.70011 1.11483 1.37391 1.22707 0.86486 0.79646 0.83144 0.78579 1.19424 1.19980 1.18356 1.22452 1.32607 0.98438 0.96992 1.19818 0.84331 0.94393 0.90585 1.86721 1.37449 1.84903 1.28752 1.81576 1.74378 1.17300 0.95825 1.22476 1.06602 0.98181 0.96951 0.92171 0.92891 0.93038 0.91715 0.91510 0.87132 0.87237 0.86234 0.90792 0.95806 0.93023 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 37.15 0.37 -1.74 16 2 C -0.08 -1.27 5.87 -27.89 -0.16 -1.43 16 3 C -0.07 -1.49 5.16 -104.25 -0.54 -2.03 16 4 C -0.12 -2.21 9.64 -39.65 -0.38 -2.59 16 5 C -0.16 -3.10 10.02 -39.72 -0.40 -3.50 16 6 C -0.04 -0.85 8.44 -38.99 -0.33 -1.18 16 7 C -0.04 -1.04 5.56 -105.21 -0.58 -1.63 16 8 C 0.14 3.81 5.40 -106.18 -0.57 3.24 16 9 C -0.45 -11.94 8.16 -38.06 -0.31 -12.25 16 10 H 0.08 2.23 7.86 -52.49 -0.41 1.82 16 11 C 0.08 1.99 4.09 -17.32 -0.07 1.92 16 12 N -0.79 -19.94 10.73 55.54 0.60 -19.34 16 13 Si 0.90 18.44 29.61 -169.99 -5.03 13.41 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 16 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 17 C -0.39 -9.82 5.93 -34.96 -0.21 -10.03 16 18 C 0.19 4.12 7.08 36.00 0.25 4.38 16 19 O -0.57 -12.03 13.64 -35.23 -0.48 -12.51 16 20 S 0.05 1.05 22.28 -107.50 -2.39 -1.35 16 21 C -0.13 -2.96 6.27 -38.57 -0.24 -3.20 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 26 H 0.07 1.10 7.76 -51.93 -0.40 0.69 16 27 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.12 2.84 5.99 -52.48 -0.31 2.53 16 30 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 1.15 7.57 -51.93 -0.39 0.75 16 33 H 0.36 5.27 9.12 45.56 0.42 5.69 16 LS Contribution 292.42 15.07 4.41 4.41 Total: -1.00 -29.32 292.42 -9.28 -38.60 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -3.20 Total: 6.82 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -3.18 Total: -30.04 kcal Atomic # 7 Polarization: -19.94 SS G_CDS: 0.60 Total: -19.34 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.48 Total: -12.51 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.39 Total: -1.35 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.32 -9.28 -38.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303926.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.939 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds