Wall clock time and date at job start Mon Mar 30 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47120 * 2 1 4 4 C 1.37642 * 119.81642 * 264.99989 * 3 2 1 5 5 C 1.38629 * 120.19262 * 180.02562 * 4 3 2 6 6 C 1.37467 * 120.26379 * 359.97438 * 5 4 3 7 7 C 1.40544 * 120.31720 * 0.02562 * 6 5 4 8 8 C 1.46648 * 129.54314 * 179.97438 * 7 6 5 9 9 C 1.40803 * 123.30043 * 359.72935 * 8 7 6 10 10 H 1.07991 * 119.99972 * 143.19637 * 9 8 7 11 11 C 1.39723 * 119.99499 * 323.19410 * 9 8 7 12 12 N 1.31063 * 120.00345 * 339.31205 * 11 9 8 13 13 Si 1.86803 * 119.99733 * 159.31406 * 11 9 8 14 14 H 1.48506 * 109.47132 * 89.99878 * 13 11 9 15 15 H 1.48500 * 109.47161 * 209.99902 * 13 11 9 16 16 H 1.48504 * 109.47125 * 329.99826 * 13 11 9 17 17 C 1.36443 * 113.39931 * 179.97438 * 8 7 6 18 18 C 1.50699 * 124.01199 * 179.97438 * 17 8 7 19 19 O 1.42897 * 109.47353 * 89.20024 * 18 17 8 20 20 S 1.69978 * 111.96679 * 359.97438 * 17 8 7 21 21 C 1.39387 * 119.24073 * 359.97418 * 7 6 5 22 22 H 1.09002 * 109.47024 * 299.99614 * 1 2 3 23 23 H 1.08996 * 109.47286 * 59.99714 * 1 2 3 24 24 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47743 * 240.00343 * 2 1 3 26 26 H 1.09001 * 109.47304 * 119.99801 * 2 1 3 27 27 H 1.08000 * 119.90870 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.86790 * 179.97438 * 5 4 3 29 29 H 1.08008 * 119.84184 * 179.97438 * 6 5 4 30 30 H 0.97007 * 119.99944 * 177.39077 * 12 11 9 31 31 H 1.09004 * 109.46741 * 209.19802 * 18 17 8 32 32 H 1.09006 * 109.47388 * 329.19410 * 18 17 8 33 33 H 0.96694 * 114.00476 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3585 2.0314 -1.1897 5 6 2.8219 3.3379 -1.1987 6 6 2.9582 4.0328 -0.0204 7 6 2.6298 3.4252 1.2036 8 6 2.6966 3.9695 2.5637 9 6 3.1378 5.2749 2.8531 10 1 2.6684 5.8406 3.6443 11 6 4.1830 5.8384 2.1167 12 7 5.0122 5.0655 1.4588 13 14 4.3986 7.6933 2.0699 14 1 5.2855 8.1168 3.1832 15 1 5.0074 8.0884 0.7744 16 1 3.0743 8.3494 2.2151 17 6 2.2942 3.0851 3.5216 18 6 2.2675 3.3941 4.9963 19 8 1.0008 3.9578 5.3421 20 16 1.8267 1.5936 2.8538 21 6 2.1643 2.1114 1.2083 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2533 1.4911 -2.1189 28 1 3.0767 3.8117 -2.1351 29 1 3.3202 5.0503 -0.0354 30 1 5.7148 5.4579 0.9170 31 1 2.4234 2.4759 5.5628 32 1 3.0587 4.1056 5.2329 33 1 0.9123 4.1815 6.2786 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396303926.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:54 Heat of formation + Delta-G solvation = -49.389159 kcal Electronic energy + Delta-G solvation = -17357.047194 eV Core-core repulsion = 14665.170484 eV Total energy + Delta-G solvation = -2691.876710 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.31938 -37.99513 -36.63057 -34.61797 -34.23363 -30.92687 -29.96837 -28.62228 -26.08255 -24.47182 -23.42388 -21.45877 -21.18107 -18.34922 -18.19960 -18.03287 -16.99500 -16.41249 -16.20160 -15.65869 -15.11990 -14.84802 -14.56978 -14.31150 -14.04716 -14.01370 -13.62566 -13.08069 -12.95518 -12.85528 -12.54188 -12.36826 -12.20772 -12.16542 -11.83471 -11.52473 -11.38224 -11.14732 -10.80641 -10.71693 -9.89833 -9.04944 -8.74037 -8.17395 -6.31847 0.23264 0.56790 1.19512 1.26430 1.35681 1.48202 1.83555 1.88139 2.22236 2.86954 3.29034 3.87613 3.96570 4.10364 4.26289 4.40155 4.42342 4.53910 4.59683 4.66812 4.77734 4.80116 5.01531 5.08203 5.14472 5.18475 5.26178 5.38685 5.46276 5.57799 5.75074 5.78800 6.09427 6.25092 6.40416 6.75403 6.91429 7.06882 8.32652 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.009420 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.180009 B = 2971.561252 C = 4251.606560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.077 4.077 4 C -0.110 4.110 5 C -0.147 4.147 6 C -0.064 4.064 7 C -0.080 4.080 8 C 0.108 3.892 9 C -0.486 4.486 10 H 0.069 0.931 11 C 0.050 3.950 12 N -0.815 5.815 13 Si 0.965 3.035 14 H -0.263 1.263 15 H -0.260 1.260 16 H -0.266 1.266 17 C -0.419 4.419 18 C 0.192 3.808 19 O -0.590 6.590 20 S 0.068 5.932 21 C -0.151 4.151 22 H 0.035 0.965 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.157 0.843 28 H 0.143 0.857 29 H 0.104 0.896 30 H 0.288 0.712 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -4.847 -3.751 6.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.083 4.083 4 C -0.130 4.130 5 C -0.168 4.168 6 C -0.084 4.084 7 C -0.088 4.088 8 C 0.098 3.902 9 C -0.518 4.518 10 H 0.087 0.913 11 C -0.166 4.166 12 N -0.441 5.441 13 Si 0.786 3.214 14 H -0.188 1.188 15 H -0.184 1.184 16 H -0.190 1.190 17 C -0.535 4.535 18 C 0.113 3.887 19 O -0.398 6.398 20 S 0.331 5.669 21 C -0.266 4.266 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.175 0.825 28 H 0.161 0.839 29 H 0.122 0.878 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.535 -6.242 -3.739 8.090 hybrid contribution 1.043 2.589 0.433 2.824 sum -2.492 -3.654 -3.306 5.522 Atomic orbital electron populations 1.21690 0.93985 1.02544 1.01589 1.20537 0.96878 0.90840 1.03207 1.19611 1.01164 0.97203 0.90287 1.21089 0.99713 0.94857 0.97344 1.21174 1.02444 0.95723 0.97459 1.21021 0.96504 0.99677 0.91180 1.19663 1.00642 0.93681 0.94860 1.17740 0.90446 0.93278 0.88711 1.19026 1.16063 0.98781 1.17962 0.91296 1.26482 0.93282 1.04130 0.92701 1.70041 1.11806 1.39198 1.23089 0.85478 0.79228 0.77470 0.79242 1.18751 1.18399 1.18972 1.23066 1.32207 0.99681 0.98497 1.19732 0.84389 0.95004 0.89549 1.86628 1.36694 1.84963 1.31472 1.81172 1.74276 1.15697 0.95751 1.22822 1.07431 0.98050 0.98275 0.94566 0.92081 0.90172 0.88505 0.92172 0.82508 0.83919 0.87754 0.90100 0.93763 0.94126 0.76842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.89 71.98 0.71 -2.95 16 2 C -0.08 -2.24 5.87 29.85 0.18 -2.07 16 3 C -0.08 -2.91 5.16 -19.63 -0.10 -3.01 16 4 C -0.11 -3.74 9.64 22.22 0.21 -3.53 16 5 C -0.15 -5.57 10.02 22.18 0.22 -5.35 16 6 C -0.06 -3.03 8.44 22.65 0.19 -2.84 16 7 C -0.08 -4.17 5.56 -20.24 -0.11 -4.28 16 8 C 0.11 6.06 5.40 -20.87 -0.11 5.95 16 9 C -0.49 -27.02 8.16 23.26 0.19 -26.83 16 10 H 0.07 3.88 7.86 -2.92 -0.02 3.85 16 11 C 0.05 2.55 4.09 85.17 0.35 2.90 16 12 N -0.82 -42.21 10.73 21.80 0.23 -41.97 16 13 Si 0.96 38.68 29.61 68.60 2.03 40.71 16 14 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 15 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 16 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 17 C -0.42 -21.86 5.93 25.27 0.15 -21.71 16 18 C 0.19 8.68 7.08 71.24 0.50 9.18 16 19 O -0.59 -25.04 13.64 -148.98 -2.03 -27.07 16 20 S 0.07 3.13 22.28 -56.49 -1.26 1.87 16 21 C -0.15 -7.05 6.27 22.92 0.14 -6.91 16 22 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.10 2.21 8.04 -2.39 -0.02 2.19 16 26 H 0.06 1.83 7.76 -2.39 -0.02 1.81 16 27 H 0.16 3.89 8.06 -2.91 -0.02 3.86 16 28 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 29 H 0.10 5.12 5.99 -2.91 -0.02 5.10 16 30 H 0.29 13.51 8.30 -92.70 -0.77 12.74 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.89 7.57 -2.38 -0.02 1.87 16 33 H 0.38 11.23 9.12 -74.06 -0.68 10.56 16 Total: -1.00 -66.15 292.42 1.95 -64.20 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.46 Total: 23.71 kcal Atomic # 6 Polarization: -63.97 SS G_CDS: 2.52 Total: -61.44 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.23 Total: -41.97 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -2.03 Total: -27.07 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.26 Total: 1.87 kcal Total: -66.15 1.95 -64.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396303926.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.810 kcal (2) G-P(sol) polarization free energy of solvation -66.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds