Wall clock time and date at job start Mon Mar 30 2020 06:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47171 * 2 1 4 4 C 1.38673 * 119.89922 * 265.02245 * 3 2 1 5 5 C 1.37428 * 120.26312 * 179.97438 * 4 3 2 6 6 C 1.40591 * 120.31446 * 359.97438 * 5 4 3 7 7 C 1.46635 * 129.53614 * 179.97438 * 6 5 4 8 8 C 1.40817 * 123.29667 * 359.96987 * 7 6 5 9 9 H 1.07997 * 120.00159 * 22.22159 * 8 7 6 10 10 C 1.39729 * 119.99845 * 202.21972 * 8 7 6 11 11 N 1.31070 * 119.99697 * 10.94975 * 10 8 7 12 12 Si 1.86791 * 119.99889 * 190.95242 * 10 8 7 13 13 H 1.48508 * 109.47315 * 59.99809 * 12 10 8 14 14 H 1.48506 * 109.47355 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47256 * 299.99829 * 12 10 8 16 16 C 1.36437 * 113.40284 * 179.28909 * 7 6 5 17 17 S 1.69979 * 111.95599 * 0.65880 * 16 7 6 18 18 C 1.39350 * 119.23905 * 359.75689 * 6 5 4 19 19 C 1.37597 * 119.90628 * 84.99953 * 3 2 1 20 20 C 1.50701 * 119.81629 * 359.97438 * 19 3 2 21 21 O 1.42903 * 109.46996 * 90.00345 * 20 19 3 22 22 H 1.09001 * 109.47313 * 300.00270 * 1 2 3 23 23 H 1.08995 * 109.47132 * 60.00148 * 1 2 3 24 24 H 1.09004 * 109.47333 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47313 * 239.99730 * 2 1 3 26 26 H 1.09006 * 109.46809 * 119.99540 * 2 1 3 27 27 H 1.07993 * 119.86741 * 359.97438 * 4 3 2 28 28 H 1.07990 * 119.84193 * 179.97438 * 5 4 3 29 29 H 0.97000 * 119.99193 * 180.02562 * 11 10 8 30 30 H 1.08006 * 124.02725 * 180.13990 * 16 7 6 31 31 H 1.09001 * 109.47455 * 330.00458 * 20 19 3 32 32 H 1.09007 * 109.47336 * 209.99928 * 20 19 3 33 33 H 0.96704 * 113.99886 * 300.00005 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0378 -1.1976 5 6 2.8194 3.3334 -1.2064 6 6 2.9586 4.0450 -0.0019 7 6 3.4229 5.4176 0.2230 8 6 3.8247 6.2779 -0.8168 9 1 3.4810 6.1031 -1.8256 10 6 4.6683 7.3578 -0.5434 11 7 5.2568 7.4504 0.6240 12 14 4.9570 8.6694 -1.8417 13 1 3.6635 9.3058 -2.1987 14 1 5.8840 9.6992 -1.3075 15 1 5.5524 8.0463 -3.0510 16 6 3.4134 5.7844 1.5371 17 16 2.8773 4.5248 2.5447 18 6 2.6218 3.4232 1.1989 19 6 2.1630 2.1023 1.1882 20 6 1.8022 1.4240 2.4847 21 8 2.9534 0.7617 3.0122 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 2.2565 1.4980 -2.1271 28 1 3.0738 3.8071 -2.1429 29 1 5.8421 8.2003 0.8138 30 1 3.7186 6.7565 1.8955 31 1 1.0132 0.6935 2.3053 32 1 1.4522 2.1688 3.1994 33 1 3.3196 0.0839 2.4277 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396304024.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:22 Heat of formation + Delta-G solvation = -52.809022 kcal Electronic energy + Delta-G solvation = -17123.001819 eV Core-core repulsion = 14430.976812 eV Total energy + Delta-G solvation = -2692.025006 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76021 -38.05572 -36.76442 -35.02567 -33.00237 -32.25992 -29.27058 -28.13137 -26.65577 -24.72695 -23.08489 -22.20150 -20.94036 -18.75165 -18.32811 -17.67121 -16.88578 -16.69774 -16.07128 -15.53905 -15.28785 -14.87693 -14.64031 -14.40043 -14.23241 -13.73628 -13.34976 -13.33467 -12.99675 -12.79679 -12.60666 -12.45351 -12.17743 -11.95421 -11.88728 -11.65560 -11.49755 -11.15846 -11.03009 -10.85107 -10.09657 -9.01725 -8.60927 -8.45494 -6.30945 0.17670 0.41646 1.17537 1.29143 1.35293 1.47435 1.88450 1.97969 2.20981 2.73920 3.36055 3.68348 3.83172 3.91626 4.07828 4.16698 4.30703 4.56735 4.57919 4.67755 4.76581 4.78879 4.91847 5.12791 5.18081 5.18908 5.22135 5.40948 5.48932 5.54369 5.67853 5.73806 5.96612 6.16605 6.51475 6.81030 6.81598 6.93220 8.39359 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.006297 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.893638 B = 4445.518832 C = 5194.496510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.063 4.063 4 C -0.130 4.130 5 C -0.084 4.084 6 C -0.109 4.109 7 C 0.053 3.947 8 C -0.469 4.469 9 H 0.078 0.922 10 C 0.022 3.978 11 N -0.836 5.836 12 Si 0.990 3.010 13 H -0.261 1.261 14 H -0.271 1.271 15 H -0.256 1.256 16 C -0.392 4.392 17 S 0.051 5.949 18 C -0.135 4.135 19 C -0.118 4.118 20 C 0.124 3.876 21 O -0.572 6.572 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.155 0.845 28 H 0.120 0.880 29 H 0.282 0.718 30 H 0.134 0.866 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -13.153 -2.811 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.066 4.066 4 C -0.151 4.151 5 C -0.104 4.104 6 C -0.118 4.118 7 C 0.044 3.956 8 C -0.502 4.502 9 H 0.096 0.904 10 C -0.190 4.190 11 N -0.464 5.464 12 Si 0.810 3.190 13 H -0.185 1.185 14 H -0.195 1.195 15 H -0.181 1.181 16 C -0.527 4.527 17 S 0.313 5.687 18 C -0.251 4.251 19 C -0.124 4.124 20 C 0.047 3.953 21 O -0.380 6.380 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.173 0.827 28 H 0.138 0.862 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.896 -12.585 -0.596 14.363 hybrid contribution 0.910 1.396 -2.254 2.803 sum -5.986 -11.189 -2.850 13.005 Atomic orbital electron populations 1.21786 0.93933 1.02808 1.01922 1.20615 0.96749 0.89789 1.04294 1.19931 0.98080 0.97458 0.91096 1.21066 1.01274 0.93835 0.98960 1.21080 0.98407 0.95037 0.95892 1.19905 1.02919 0.94769 0.94235 1.17841 0.93924 0.90192 0.93643 1.19260 1.26229 1.09455 0.95218 0.90435 1.26781 0.93349 1.00253 0.98658 1.69974 1.23005 1.29187 1.24229 0.85140 0.78978 0.76851 0.78025 1.18519 1.19535 1.18057 1.24286 1.27534 1.03501 0.97393 1.81517 1.71748 1.05094 1.10295 1.22827 1.06367 0.98842 0.97030 1.20011 1.03463 0.91376 0.97571 1.21189 0.88188 0.95577 0.90385 1.86564 1.46933 1.56445 1.48025 0.93211 0.92894 0.90084 0.88902 0.89829 0.82728 0.86248 0.90733 0.84865 0.88955 0.90562 0.76253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.69 71.98 0.70 -1.69 16 2 C -0.08 -1.39 5.36 29.85 0.16 -1.23 16 3 C -0.06 -1.82 5.13 -19.91 -0.10 -1.92 16 4 C -0.13 -4.08 9.65 22.18 0.21 -3.86 16 5 C -0.08 -3.46 9.87 22.65 0.22 -3.23 16 6 C -0.11 -5.42 6.02 -20.24 -0.12 -5.54 16 7 C 0.05 3.04 5.68 -20.88 -0.12 2.92 16 8 C -0.47 -26.40 9.07 23.26 0.21 -26.19 16 9 H 0.08 4.11 7.69 -2.91 -0.02 4.08 16 10 C 0.02 1.17 5.36 85.17 0.46 1.63 16 11 N -0.84 -47.18 10.81 21.80 0.24 -46.95 16 12 Si 0.99 40.26 29.57 68.60 2.03 42.29 16 13 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 14 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 15 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 16 C -0.39 -22.54 9.52 67.40 0.64 -21.90 16 17 S 0.05 2.45 22.23 -56.49 -1.26 1.19 16 18 C -0.14 -6.17 6.27 22.92 0.14 -6.03 16 19 C -0.12 -4.14 5.50 -19.63 -0.11 -4.25 16 20 C 0.12 3.60 6.29 71.24 0.45 4.04 16 21 O -0.57 -16.63 13.67 -148.98 -2.04 -18.67 16 22 H 0.05 0.88 6.89 -2.39 -0.02 0.87 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.09 1.35 8.05 -2.39 -0.02 1.33 16 26 H 0.08 1.25 6.24 -2.38 -0.01 1.23 16 27 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 28 H 0.12 4.70 7.88 -2.92 -0.02 4.68 16 29 H 0.28 14.53 8.30 -92.71 -0.77 13.76 16 30 H 0.13 8.24 6.27 -2.91 -0.02 8.22 16 31 H 0.09 1.99 5.36 -2.39 -0.01 1.97 16 32 H 0.08 2.44 7.56 -2.38 -0.02 2.42 16 33 H 0.39 7.98 8.34 -74.05 -0.62 7.36 16 Total: -1.00 -68.98 287.93 2.24 -66.73 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.53 Total: 22.65 kcal Atomic # 6 Polarization: -69.99 SS G_CDS: 2.75 Total: -67.25 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.24 Total: -46.95 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -2.04 Total: -18.67 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.26 Total: 1.19 kcal Total: -68.98 2.24 -66.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396304024.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.922 kcal (2) G-P(sol) polarization free energy of solvation -68.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds