Wall clock time and date at job start Mon Mar 30 2020 06:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46592 * 2 1 4 4 C 1.35217 * 119.80312 * 264.99571 * 3 2 1 5 5 C 1.41976 * 120.86868 * 180.02562 * 4 3 2 6 6 C 1.40442 * 128.63984 * 180.02562 * 5 4 3 7 7 C 1.32534 * 115.87720 * 179.97438 * 6 5 4 8 8 C 1.50706 * 124.57146 * 179.97438 * 7 6 5 9 9 O 1.42900 * 109.46879 * 89.97685 * 8 7 6 10 10 S 1.75475 * 110.84853 * 0.02562 * 7 6 5 11 11 C 1.40372 * 119.00437 * 359.97438 * 5 4 3 12 12 C 1.38844 * 120.17303 * 359.97438 * 11 5 4 13 13 C 1.40389 * 119.96744 * 359.79107 * 12 11 5 14 14 C 1.40995 * 120.20763 * 180.21310 * 13 12 11 15 15 H 1.07996 * 119.99911 * 154.57010 * 14 13 12 16 16 C 1.39876 * 119.99689 * 334.57973 * 14 13 12 17 17 N 1.30883 * 120.00498 * 342.84818 * 16 14 13 18 18 Si 1.86807 * 119.99818 * 162.85106 * 16 14 13 19 19 H 1.48499 * 109.46893 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47228 * 119.99593 * 18 16 14 21 21 H 1.48502 * 109.46991 * 240.00123 * 18 16 14 22 22 H 1.08996 * 109.47089 * 299.99805 * 1 2 3 23 23 H 1.08999 * 109.47330 * 60.00039 * 1 2 3 24 24 H 1.09003 * 109.46882 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46850 * 120.00178 * 2 1 3 26 26 H 1.08996 * 109.47089 * 240.00195 * 2 1 3 27 27 H 1.08001 * 119.56647 * 359.97438 * 4 3 2 28 28 H 1.08002 * 122.05978 * 359.95674 * 6 5 4 29 29 H 1.09000 * 109.46605 * 209.97509 * 8 7 6 30 30 H 1.08999 * 109.46942 * 329.97835 * 8 7 6 31 31 H 0.96704 * 113.99622 * 179.97438 * 9 8 7 32 32 H 1.08002 * 120.01390 * 180.02562 * 12 11 5 33 33 H 0.97002 * 120.00344 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3527 2.0204 -1.1689 5 6 2.8284 3.3578 -1.1951 6 6 3.2050 4.1331 -2.3040 7 6 3.6155 5.3644 -2.0363 8 6 4.0643 6.3608 -3.0741 9 8 2.9406 7.1228 -3.5201 10 16 3.5674 5.6775 -0.3104 11 6 2.9629 4.0563 0.0151 12 6 2.6331 3.4420 1.2157 13 6 2.1597 2.1203 1.2204 14 6 1.8191 1.4931 2.4363 15 1 1.1012 0.6863 2.4451 16 6 2.4108 1.9160 3.6311 17 7 3.5016 2.6387 3.6013 18 14 1.6442 1.4491 5.2694 19 1 0.4252 0.6351 5.0314 20 1 2.6189 0.6605 6.0652 21 1 1.2788 2.6809 6.0139 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.2462 1.4744 -2.0946 28 1 3.1629 3.7493 -3.3127 29 1 4.8069 7.0294 -2.6386 30 1 4.5032 5.8317 -3.9199 31 1 3.1561 7.7858 -4.1903 32 1 2.7372 3.9819 2.1453 33 1 3.9117 2.9323 4.4299 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396304100.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:20 Heat of formation + Delta-G solvation = -32.991604 kcal Electronic energy + Delta-G solvation = -16872.543333 eV Core-core repulsion = 14181.377674 eV Total energy + Delta-G solvation = -2691.165659 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.51009 -36.84676 -35.20038 -33.69086 -31.96708 -29.54580 -28.51066 -26.77260 -24.17216 -22.93803 -20.96914 -20.91158 -18.53098 -17.54878 -17.21365 -16.31413 -15.30614 -14.69195 -14.61000 -13.85535 -13.70542 -13.35676 -12.96696 -12.62466 -12.45550 -12.19445 -11.93513 -11.71835 -11.41702 -11.28698 -11.21823 -10.82518 -10.56374 -10.34086 -10.18557 -9.79766 -9.74215 -9.68342 -9.35155 -9.10403 -8.40495 -7.27686 -6.97047 -6.61441 -4.48390 1.82288 2.67331 2.75279 2.87761 2.98005 3.02532 3.13288 3.47670 3.77316 4.43860 4.78881 5.39180 5.41377 5.51485 5.66025 5.83197 5.84938 6.05606 6.19731 6.21534 6.45443 6.50643 6.61738 6.79156 6.86528 6.90907 7.00331 7.02422 7.27207 7.31654 7.67016 7.75749 7.81274 7.85771 8.02091 8.35840 8.63480 8.71839 9.94076 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.006355 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.836562 B = 4405.188181 C = 5377.233089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.161 4.161 4 C -0.049 4.049 5 C -0.213 4.213 6 C -0.046 4.046 7 C -0.249 4.249 8 C 0.162 3.838 9 O -0.568 6.568 10 S 0.011 5.989 11 C -0.067 4.067 12 C -0.162 4.162 13 C 0.132 3.868 14 C -0.433 4.433 15 H 0.090 0.910 16 C 0.071 3.929 17 N -0.772 5.772 18 Si 0.910 3.090 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.270 1.270 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.370 0.630 32 H 0.122 0.878 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 1.200 -5.550 5.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.162 4.162 4 C -0.070 4.070 5 C -0.218 4.218 6 C -0.077 4.077 7 C -0.364 4.364 8 C 0.083 3.917 9 O -0.373 6.373 10 S 0.272 5.728 11 C -0.182 4.182 12 C -0.188 4.188 13 C 0.126 3.874 14 C -0.462 4.462 15 H 0.108 0.892 16 C -0.149 4.149 17 N -0.396 5.396 18 Si 0.734 3.266 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.195 1.195 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.134 0.866 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.216 0.784 32 H 0.140 0.860 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.175 2.205 -4.172 4.721 hybrid contribution -0.159 -0.906 -0.500 1.047 sum 0.016 1.299 -4.671 4.849 Atomic orbital electron populations 1.21740 0.96449 0.99950 1.01912 1.20222 0.94835 0.94022 1.01068 1.19397 1.07709 0.95742 0.93371 1.20077 0.98236 0.92317 0.96353 1.17676 1.16075 0.96703 0.91334 1.19653 0.96925 0.92968 0.98116 1.22935 1.18579 0.98516 0.96334 1.20240 0.86965 0.90946 0.93551 1.86674 1.35532 1.53483 1.61642 1.83552 1.73073 1.15334 1.00814 1.22328 1.03361 0.94903 0.97624 1.20554 1.09021 0.95069 0.94199 1.17330 0.88257 0.90136 0.91705 1.19725 1.20467 1.15367 0.90610 0.89207 1.26052 0.93566 0.93400 1.01912 1.69863 1.13475 1.25620 1.30598 0.86211 0.80364 0.79505 0.80539 1.18057 1.19721 1.19451 0.92184 0.93570 0.93946 0.91156 0.93363 0.88719 0.86605 0.93535 0.92949 0.78418 0.85978 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.78 37.16 0.36 -2.08 16 2 C -0.06 -1.22 5.38 -27.88 -0.15 -1.37 16 3 C -0.16 -3.67 5.13 -104.56 -0.54 -4.20 16 4 C -0.05 -1.10 9.59 -39.23 -0.38 -1.48 16 5 C -0.21 -5.01 5.89 -106.83 -0.63 -5.63 16 6 C -0.05 -0.97 9.97 -40.66 -0.41 -1.37 16 7 C -0.25 -5.04 6.05 -36.22 -0.22 -5.26 16 8 C 0.16 2.53 7.50 36.01 0.27 2.80 16 9 O -0.57 -8.76 13.64 -35.23 -0.48 -9.24 16 10 S 0.01 0.24 23.26 -107.50 -2.50 -2.26 16 11 C -0.07 -1.67 6.46 -38.56 -0.25 -1.92 16 12 C -0.16 -4.22 8.71 -38.55 -0.34 -4.56 16 13 C 0.13 3.33 5.56 -106.90 -0.59 2.73 16 14 C -0.43 -10.50 8.06 -37.93 -0.31 -10.81 16 15 H 0.09 2.05 6.03 -52.49 -0.32 1.73 16 16 C 0.07 1.67 5.14 -17.34 -0.09 1.59 16 17 N -0.77 -19.03 10.97 55.54 0.61 -18.42 16 18 Si 0.91 17.46 29.59 -169.99 -5.03 12.42 16 19 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H 0.06 1.09 7.24 -51.93 -0.38 0.71 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.37 7.05 -51.93 -0.37 1.01 16 26 H 0.05 0.83 8.01 -51.93 -0.42 0.41 16 27 H 0.09 1.84 8.02 -52.49 -0.42 1.42 16 28 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.37 3.43 9.12 45.56 0.42 3.85 16 32 H 0.12 3.30 6.18 -52.49 -0.32 2.98 16 33 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 292.58 15.07 4.41 4.41 Total: -1.00 -28.42 292.58 -9.30 -37.73 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.05 Total: 6.93 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -3.26 Total: -31.56 kcal Atomic # 7 Polarization: -19.03 SS G_CDS: 0.61 Total: -18.42 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.48 Total: -9.24 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.42 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.50 Total: -2.26 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.42 -9.30 -37.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396304100.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.735 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds