Wall clock time and date at job start Mon Mar 30 2020 06:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46592 * 2 1 4 4 C 1.35217 * 119.80312 * 264.99571 * 3 2 1 5 5 C 1.41976 * 120.86868 * 180.02562 * 4 3 2 6 6 C 1.40442 * 128.63984 * 180.02562 * 5 4 3 7 7 C 1.32534 * 115.87720 * 179.97438 * 6 5 4 8 8 C 1.50706 * 124.57146 * 179.97438 * 7 6 5 9 9 O 1.42900 * 109.46879 * 89.97685 * 8 7 6 10 10 S 1.75475 * 110.84853 * 0.02562 * 7 6 5 11 11 C 1.40372 * 119.00437 * 359.97438 * 5 4 3 12 12 C 1.38844 * 120.17303 * 359.97438 * 11 5 4 13 13 C 1.40389 * 119.96744 * 359.79107 * 12 11 5 14 14 C 1.40995 * 120.20763 * 180.21310 * 13 12 11 15 15 H 1.07996 * 119.99911 * 154.57010 * 14 13 12 16 16 C 1.39876 * 119.99689 * 334.57973 * 14 13 12 17 17 N 1.30883 * 120.00498 * 342.84818 * 16 14 13 18 18 Si 1.86807 * 119.99818 * 162.85106 * 16 14 13 19 19 H 1.48499 * 109.46893 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47228 * 119.99593 * 18 16 14 21 21 H 1.48502 * 109.46991 * 240.00123 * 18 16 14 22 22 H 1.08996 * 109.47089 * 299.99805 * 1 2 3 23 23 H 1.08999 * 109.47330 * 60.00039 * 1 2 3 24 24 H 1.09003 * 109.46882 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46850 * 120.00178 * 2 1 3 26 26 H 1.08996 * 109.47089 * 240.00195 * 2 1 3 27 27 H 1.08001 * 119.56647 * 359.97438 * 4 3 2 28 28 H 1.08002 * 122.05978 * 359.95674 * 6 5 4 29 29 H 1.09000 * 109.46605 * 209.97509 * 8 7 6 30 30 H 1.08999 * 109.46942 * 329.97835 * 8 7 6 31 31 H 0.96704 * 113.99622 * 179.97438 * 9 8 7 32 32 H 1.08002 * 120.01390 * 180.02562 * 12 11 5 33 33 H 0.97002 * 120.00344 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3527 2.0204 -1.1689 5 6 2.8284 3.3578 -1.1951 6 6 3.2050 4.1331 -2.3040 7 6 3.6155 5.3644 -2.0363 8 6 4.0643 6.3608 -3.0741 9 8 2.9406 7.1228 -3.5201 10 16 3.5674 5.6775 -0.3104 11 6 2.9629 4.0563 0.0151 12 6 2.6331 3.4420 1.2157 13 6 2.1597 2.1203 1.2204 14 6 1.8191 1.4931 2.4363 15 1 1.1012 0.6863 2.4451 16 6 2.4108 1.9160 3.6311 17 7 3.5016 2.6387 3.6013 18 14 1.6442 1.4491 5.2694 19 1 0.4252 0.6351 5.0314 20 1 2.6189 0.6605 6.0652 21 1 1.2788 2.6809 6.0139 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.2462 1.4744 -2.0946 28 1 3.1629 3.7493 -3.3127 29 1 4.8069 7.0294 -2.6386 30 1 4.5032 5.8317 -3.9199 31 1 3.1561 7.7858 -4.1903 32 1 2.7372 3.9819 2.1453 33 1 3.9117 2.9323 4.4299 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396304100.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:20 Heat of formation + Delta-G solvation = -49.733418 kcal Electronic energy + Delta-G solvation = -16873.269312 eV Core-core repulsion = 14181.377674 eV Total energy + Delta-G solvation = -2691.891638 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23729 -38.15772 -36.76213 -35.38727 -33.56324 -31.26306 -30.12652 -28.37089 -25.74422 -24.58277 -22.72186 -22.48339 -20.17798 -19.32647 -18.36636 -17.99846 -16.93890 -16.38125 -16.12653 -15.37597 -15.15254 -14.86331 -14.57427 -14.27078 -14.03362 -13.81283 -13.54493 -13.23670 -13.09093 -12.84295 -12.67531 -12.39436 -12.10818 -11.88621 -11.75256 -11.44819 -11.38118 -11.08373 -10.91601 -10.85001 -10.18415 -9.06731 -8.72047 -8.37855 -6.32984 0.13750 0.94430 0.96467 1.30142 1.38638 1.40473 1.53679 1.78768 2.16240 2.69139 3.56155 3.64324 4.09705 4.22954 4.33671 4.37992 4.47990 4.55669 4.64073 4.76026 4.93764 4.99346 5.06879 5.12632 5.20943 5.22976 5.41033 5.44682 5.54487 5.58610 5.87989 5.97700 6.11666 6.20422 6.54360 6.82070 6.91745 6.97130 8.22198 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.006355 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.836562 B = 4405.188181 C = 5377.233089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 C -0.168 4.168 4 C -0.059 4.059 5 C -0.223 4.223 6 C -0.064 4.064 7 C -0.236 4.236 8 C 0.163 3.837 9 O -0.589 6.589 10 S -0.001 6.001 11 C -0.099 4.099 12 C -0.193 4.193 13 C 0.104 3.896 14 C -0.457 4.457 15 H 0.098 0.902 16 C 0.031 3.969 17 N -0.812 5.812 18 Si 0.982 3.018 19 H -0.249 1.249 20 H -0.264 1.264 21 H -0.270 1.270 22 H 0.040 0.960 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.127 0.873 28 H 0.149 0.851 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.398 0.602 32 H 0.098 0.902 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 0.717 -7.397 7.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C -0.170 4.170 4 C -0.079 4.079 5 C -0.228 4.228 6 C -0.094 4.094 7 C -0.350 4.350 8 C 0.084 3.916 9 O -0.398 6.398 10 S 0.260 5.740 11 C -0.214 4.214 12 C -0.220 4.220 13 C 0.098 3.902 14 C -0.486 4.486 15 H 0.116 0.884 16 C -0.186 4.186 17 N -0.437 5.437 18 Si 0.802 3.198 19 H -0.171 1.171 20 H -0.189 1.189 21 H -0.195 1.195 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.249 0.751 32 H 0.116 0.884 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.169 1.731 -6.042 6.287 hybrid contribution 0.010 -0.616 -0.105 0.625 sum -0.159 1.115 -6.147 6.250 Atomic orbital electron populations 1.21671 0.94795 1.01716 1.01173 1.20255 0.96193 0.91699 1.01714 1.19830 1.06973 0.97454 0.92724 1.20439 0.97725 0.92218 0.97493 1.18186 1.15499 0.97470 0.91678 1.19917 0.97505 0.93071 0.98860 1.23625 1.16188 0.99475 0.95740 1.20337 0.87044 0.90766 0.93454 1.86576 1.35696 1.54557 1.63015 1.83507 1.72815 1.14167 1.03461 1.22638 1.04193 0.96524 0.98039 1.20473 1.11638 0.95991 0.93885 1.17713 0.88884 0.90248 0.93359 1.19970 1.21256 1.16186 0.91162 0.88410 1.26929 0.93493 0.92924 1.05267 1.69941 1.14947 1.27075 1.31713 0.85148 0.79674 0.79118 0.75863 1.17146 1.18911 1.19507 0.94049 0.93171 0.90880 0.92115 0.90990 0.85519 0.83302 0.92014 0.89586 0.75112 0.88442 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.78 71.98 0.70 -3.71 16 2 C -0.06 -2.27 5.38 29.85 0.16 -2.11 16 3 C -0.17 -7.71 5.13 -19.82 -0.10 -7.82 16 4 C -0.06 -2.57 9.59 22.50 0.22 -2.35 16 5 C -0.22 -10.41 5.89 -21.30 -0.13 -10.54 16 6 C -0.06 -2.54 9.97 21.66 0.22 -2.33 16 7 C -0.24 -9.06 6.05 24.54 0.15 -8.91 16 8 C 0.16 4.50 7.50 71.24 0.53 5.03 16 9 O -0.59 -16.08 13.64 -148.98 -2.03 -18.11 16 10 S 0.00 -0.04 23.26 -56.49 -1.31 -1.35 16 11 C -0.10 -5.08 6.46 22.93 0.15 -4.94 16 12 C -0.19 -10.67 8.71 22.94 0.20 -10.47 16 13 C 0.10 5.45 5.56 -21.34 -0.12 5.33 16 14 C -0.46 -22.97 8.06 23.34 0.19 -22.78 16 15 H 0.10 4.56 6.03 -2.91 -0.02 4.55 16 16 C 0.03 1.49 5.14 85.23 0.44 1.93 16 17 N -0.81 -42.10 10.97 21.82 0.24 -41.86 16 18 Si 0.98 36.51 29.59 68.60 2.03 38.54 16 19 H -0.25 -8.78 7.11 99.48 0.71 -8.08 16 20 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 21 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 22 H 0.04 1.47 7.24 -2.39 -0.02 1.46 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 2.35 7.05 -2.39 -0.02 2.33 16 26 H 0.07 2.29 8.01 -2.39 -0.02 2.27 16 27 H 0.13 4.60 8.02 -2.91 -0.02 4.58 16 28 H 0.15 4.88 8.06 -2.91 -0.02 4.86 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.40 5.81 9.12 -74.05 -0.68 5.13 16 32 H 0.10 5.70 6.18 -2.91 -0.02 5.68 16 33 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 Total: -1.00 -63.98 292.58 1.99 -61.99 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.46 Total: 24.44 kcal Atomic # 6 Polarization: -66.26 SS G_CDS: 2.61 Total: -63.65 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.24 Total: -41.86 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -2.03 Total: -18.11 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.31 Total: -1.35 kcal Total: -63.98 1.99 -61.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396304100.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.257 kcal (2) G-P(sol) polarization free energy of solvation -63.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds