Wall clock time and date at job start Mon Mar 30 2020 06:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46846 * 2 1 4 4 C 1.40336 * 120.07840 * 90.00085 * 3 2 1 5 5 C 1.40912 * 120.07533 * 359.97438 * 4 3 2 6 6 H 1.08001 * 120.00246 * 321.18115 * 5 4 3 7 7 C 1.39911 * 119.99955 * 141.16978 * 5 4 3 8 8 N 1.30878 * 119.99768 * 338.26937 * 7 5 4 9 9 Si 1.86801 * 119.99845 * 158.26754 * 7 5 4 10 10 H 1.48496 * 109.47324 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46904 * 120.00204 * 9 7 5 12 12 H 1.48500 * 109.47073 * 240.00107 * 9 7 5 13 13 C 1.42206 * 119.85499 * 179.97438 * 4 3 2 14 14 S 1.75906 * 130.47820 * 179.97438 * 13 4 3 15 15 C 1.75297 * 92.18003 * 179.97438 * 14 13 4 16 16 C 1.31874 * 111.33824 * 0.02562 * 15 14 13 17 17 C 1.39419 * 119.76103 * 359.97438 * 13 4 3 18 18 C 1.41336 * 119.04679 * 359.97438 * 17 13 4 19 19 C 1.38297 * 120.07506 * 269.97973 * 3 2 1 20 20 O 1.35956 * 119.67996 * 359.97438 * 19 3 2 21 21 C 1.42905 * 116.99635 * 180.02562 * 20 19 3 22 22 H 1.08996 * 109.47277 * 299.99677 * 1 2 3 23 23 H 1.08992 * 109.47406 * 60.00126 * 1 2 3 24 24 H 1.09005 * 109.47075 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47177 * 239.99869 * 2 1 3 26 26 H 1.09000 * 109.47063 * 119.99882 * 2 1 3 27 27 H 0.97008 * 119.99484 * 185.45703 * 8 7 5 28 28 H 1.07997 * 124.33551 * 179.97438 * 15 14 13 29 29 H 1.07996 * 122.55708 * 180.02562 * 16 15 14 30 30 H 1.07996 * 119.57467 * 179.97438 * 18 17 13 31 31 H 1.08995 * 109.47362 * 300.00365 * 21 20 19 32 32 H 1.09000 * 109.47103 * 60.00840 * 21 20 19 33 33 H 1.09002 * 109.46774 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2667 2.0839 1.2144 5 6 2.0325 1.4229 2.4366 6 1 1.1792 0.7694 2.5422 7 6 2.9055 1.6131 3.5133 8 7 4.1272 2.0308 3.2992 9 14 2.3272 1.2710 5.2562 10 1 0.9153 0.8119 5.2282 11 1 3.1785 0.2156 5.8619 12 1 2.4285 2.5128 6.0641 13 6 2.7412 3.4245 1.2088 14 16 3.1231 4.5062 2.5424 15 6 3.5821 5.7986 1.4506 16 6 3.4526 5.4311 0.1908 17 6 2.9713 4.0722 -0.0041 18 6 2.7268 3.3773 -1.2103 19 6 2.2637 2.0741 -1.1968 20 8 2.0364 1.4281 -2.3713 21 6 2.2950 2.1569 -3.5730 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 4.7565 2.0870 4.0353 28 1 3.9261 6.7715 1.7690 29 1 3.6868 6.0886 -0.6334 30 1 2.9017 3.8709 -2.1548 31 1 1.6655 3.0463 -3.6013 32 1 3.3437 2.4529 -3.5999 33 1 2.0727 1.5273 -4.4346 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396304255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:07 Heat of formation + Delta-G solvation = -15.269371 kcal Electronic energy + Delta-G solvation = -17625.172066 eV Core-core repulsion = 14934.774902 eV Total energy + Delta-G solvation = -2690.397165 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.07121 -36.91550 -35.00097 -33.28180 -31.44239 -29.34793 -27.82902 -26.30118 -25.28556 -22.96324 -21.42278 -20.44654 -19.18287 -17.65996 -16.14535 -15.79749 -15.41265 -15.00802 -14.88560 -13.93538 -13.54479 -13.35140 -13.00348 -12.61962 -12.10680 -12.06391 -11.80759 -11.63730 -11.42318 -11.22479 -11.08043 -10.79599 -10.77282 -10.60751 -10.25986 -9.88018 -9.62752 -9.37008 -9.25160 -8.82414 -8.08024 -7.02059 -6.83312 -6.13934 -4.52473 1.97607 2.76337 2.91653 3.03334 3.07434 3.11303 3.50736 3.54680 3.88549 4.21167 4.52368 5.29345 5.57453 5.65691 5.67089 5.85680 6.00574 6.09531 6.15445 6.26198 6.42150 6.44435 6.68212 6.76731 6.90294 6.92099 7.00791 7.12781 7.16295 7.43391 7.51814 7.57461 7.63926 7.89875 8.32704 8.47794 8.70273 8.76610 10.06966 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.010327 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.403846 B = 2710.633571 C = 4030.937205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C -0.204 4.204 4 C 0.180 3.820 5 C -0.466 4.466 6 H 0.091 0.909 7 C 0.074 3.926 8 N -0.765 5.765 9 Si 0.897 3.103 10 H -0.258 1.258 11 H -0.273 1.273 12 H -0.267 1.267 13 C -0.179 4.179 14 S 0.107 5.893 15 C -0.233 4.233 16 C -0.137 4.137 17 C -0.031 4.031 18 C -0.288 4.288 19 C 0.156 3.844 20 O -0.324 6.324 21 C 0.034 3.966 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.287 0.713 28 H 0.143 0.857 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 1.752 -3.527 4.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 C -0.210 4.210 4 C 0.175 3.825 5 C -0.495 4.495 6 H 0.109 0.891 7 C -0.147 4.147 8 N -0.389 5.389 9 Si 0.721 3.279 10 H -0.181 1.181 11 H -0.198 1.198 12 H -0.192 1.192 13 C -0.296 4.296 14 S 0.373 5.627 15 C -0.368 4.368 16 C -0.170 4.170 17 C -0.039 4.039 18 C -0.310 4.310 19 C 0.111 3.889 20 O -0.238 6.238 21 C -0.062 4.062 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.161 0.839 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.619 1.621 -1.811 2.920 hybrid contribution 0.241 0.469 -0.967 1.101 sum -1.379 2.090 -2.778 3.739 Atomic orbital electron populations 1.21697 0.97154 0.99468 1.01246 1.19904 0.94076 0.93583 1.00862 1.18903 1.16516 0.96432 0.89101 1.16482 0.86620 0.87549 0.91881 1.19387 1.10562 1.25288 0.94252 0.89126 1.25882 0.94367 0.93206 1.01225 1.69786 1.03356 1.30808 1.34936 0.86388 0.80590 0.79160 0.81782 1.18117 1.19835 1.19231 1.22548 1.14938 0.98541 0.93536 1.83720 1.69088 1.00961 1.08978 1.25246 1.09126 1.03761 0.98652 1.20735 1.04661 0.95430 0.96200 1.18725 0.99920 0.92294 0.92972 1.20101 1.19874 0.95392 0.95669 1.18300 0.95927 0.90444 0.84234 1.86020 1.83570 1.41581 1.12647 1.22790 1.00294 0.97023 0.86050 0.92941 0.93717 0.94329 0.93225 0.91435 0.90212 0.83918 0.86422 0.88209 0.93572 0.93537 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.90 37.16 0.37 -2.24 16 2 C -0.05 -1.00 5.27 -27.88 -0.15 -1.15 16 3 C -0.20 -4.97 5.20 -103.81 -0.54 -5.51 16 4 C 0.18 4.69 5.37 -106.57 -0.57 4.11 16 5 C -0.47 -11.79 7.61 -37.94 -0.29 -12.08 16 6 H 0.09 2.22 7.00 -52.49 -0.37 1.85 16 7 C 0.07 1.79 4.22 -17.33 -0.07 1.72 16 8 N -0.76 -19.14 10.76 55.55 0.60 -18.55 16 9 Si 0.90 18.31 29.62 -169.99 -5.03 13.27 16 10 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 11 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 12 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 13 C -0.18 -4.59 5.75 -37.62 -0.22 -4.81 16 14 S 0.11 2.46 19.89 -107.50 -2.14 0.32 16 15 C -0.23 -4.72 11.02 28.83 0.32 -4.40 16 16 C -0.14 -2.88 10.39 -38.60 -0.40 -3.28 16 17 C -0.03 -0.75 6.03 -105.40 -0.64 -1.39 16 18 C -0.29 -6.57 9.10 -38.38 -0.35 -6.92 16 19 C 0.16 3.61 6.63 -39.54 -0.26 3.35 16 20 O -0.32 -6.58 9.50 -19.60 -0.19 -6.77 16 21 C 0.03 0.52 9.80 101.05 0.99 1.51 16 22 H 0.05 1.02 7.67 -51.93 -0.40 0.62 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 1.02 7.51 -51.93 -0.39 0.63 16 26 H 0.07 1.48 6.98 -51.93 -0.36 1.12 16 27 H 0.29 6.58 8.31 -40.82 -0.34 6.24 16 28 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 29 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.10 2.01 6.19 -52.49 -0.32 1.68 16 31 H 0.05 0.67 7.64 -51.93 -0.40 0.27 16 32 H 0.05 0.69 7.63 -51.93 -0.40 0.29 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 286.83 15.07 4.32 4.32 Total: -1.00 -27.68 286.83 -8.13 -35.81 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -3.88 Total: 2.68 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: -1.81 Total: -31.10 kcal Atomic # 7 Polarization: -19.14 SS G_CDS: 0.60 Total: -18.55 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.19 Total: -6.77 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.14 Total: 0.32 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.68 -8.13 -35.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396304255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.543 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds