Wall clock time and date at job start Mon Mar 30 2020 06:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46846 * 2 1 4 4 C 1.40336 * 120.07840 * 90.00085 * 3 2 1 5 5 C 1.40912 * 120.07533 * 359.97438 * 4 3 2 6 6 H 1.08001 * 120.00246 * 321.18115 * 5 4 3 7 7 C 1.39911 * 119.99955 * 141.16978 * 5 4 3 8 8 N 1.30878 * 119.99768 * 338.26937 * 7 5 4 9 9 Si 1.86801 * 119.99845 * 158.26754 * 7 5 4 10 10 H 1.48496 * 109.47324 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46904 * 120.00204 * 9 7 5 12 12 H 1.48500 * 109.47073 * 240.00107 * 9 7 5 13 13 C 1.42206 * 119.85499 * 179.97438 * 4 3 2 14 14 S 1.75906 * 130.47820 * 179.97438 * 13 4 3 15 15 C 1.75297 * 92.18003 * 179.97438 * 14 13 4 16 16 C 1.31874 * 111.33824 * 0.02562 * 15 14 13 17 17 C 1.39419 * 119.76103 * 359.97438 * 13 4 3 18 18 C 1.41336 * 119.04679 * 359.97438 * 17 13 4 19 19 C 1.38297 * 120.07506 * 269.97973 * 3 2 1 20 20 O 1.35956 * 119.67996 * 359.97438 * 19 3 2 21 21 C 1.42905 * 116.99635 * 180.02562 * 20 19 3 22 22 H 1.08996 * 109.47277 * 299.99677 * 1 2 3 23 23 H 1.08992 * 109.47406 * 60.00126 * 1 2 3 24 24 H 1.09005 * 109.47075 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47177 * 239.99869 * 2 1 3 26 26 H 1.09000 * 109.47063 * 119.99882 * 2 1 3 27 27 H 0.97008 * 119.99484 * 185.45703 * 8 7 5 28 28 H 1.07997 * 124.33551 * 179.97438 * 15 14 13 29 29 H 1.07996 * 122.55708 * 180.02562 * 16 15 14 30 30 H 1.07996 * 119.57467 * 179.97438 * 18 17 13 31 31 H 1.08995 * 109.47362 * 300.00365 * 21 20 19 32 32 H 1.09000 * 109.47103 * 60.00840 * 21 20 19 33 33 H 1.09002 * 109.46774 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2667 2.0839 1.2144 5 6 2.0325 1.4229 2.4366 6 1 1.1792 0.7694 2.5422 7 6 2.9055 1.6131 3.5133 8 7 4.1272 2.0308 3.2992 9 14 2.3272 1.2710 5.2562 10 1 0.9153 0.8119 5.2282 11 1 3.1785 0.2156 5.8619 12 1 2.4285 2.5128 6.0641 13 6 2.7412 3.4245 1.2088 14 16 3.1231 4.5062 2.5424 15 6 3.5821 5.7986 1.4506 16 6 3.4526 5.4311 0.1908 17 6 2.9713 4.0722 -0.0041 18 6 2.7268 3.3773 -1.2103 19 6 2.2637 2.0741 -1.1968 20 8 2.0364 1.4281 -2.3713 21 6 2.2950 2.1569 -3.5730 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 4.7565 2.0870 4.0353 28 1 3.9261 6.7715 1.7690 29 1 3.6868 6.0886 -0.6334 30 1 2.9017 3.8709 -2.1548 31 1 1.6655 3.0463 -3.6013 32 1 3.3437 2.4529 -3.5999 33 1 2.0727 1.5273 -4.4346 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396304255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:06 Heat of formation + Delta-G solvation = -29.124363 kcal Electronic energy + Delta-G solvation = -17625.772864 eV Core-core repulsion = 14934.774902 eV Total energy + Delta-G solvation = -2690.997962 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73394 -38.55423 -36.71532 -35.03687 -33.09755 -31.12341 -29.36232 -27.85176 -27.00756 -24.63028 -23.15656 -22.10697 -20.87438 -19.43259 -17.75127 -17.56555 -17.07980 -16.68844 -16.37625 -15.58178 -15.11888 -14.95148 -14.67900 -14.27784 -13.76208 -13.67750 -13.41155 -13.30739 -13.05188 -12.90182 -12.67476 -12.39376 -12.25873 -12.19240 -11.91820 -11.55911 -11.34703 -11.08902 -10.96788 -10.54557 -9.86197 -8.80701 -8.59807 -7.90948 -6.39653 0.25768 0.98135 1.23027 1.37919 1.41213 1.51118 1.78397 1.81789 2.20108 2.69388 2.76286 3.47642 4.03646 4.34469 4.43655 4.47872 4.48427 4.55743 4.64382 4.75487 4.81352 4.84725 4.99731 5.15917 5.20639 5.24801 5.27078 5.43942 5.51937 5.70653 5.77643 5.82936 5.89901 6.09729 6.47862 6.73365 6.92178 6.96167 8.30067 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.010327 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.403846 B = 2710.633571 C = 4030.937205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.042 4.042 3 C -0.228 4.228 4 C 0.151 3.849 5 C -0.491 4.491 6 H 0.086 0.914 7 C 0.044 3.956 8 N -0.794 5.794 9 Si 0.955 3.045 10 H -0.257 1.257 11 H -0.264 1.264 12 H -0.263 1.263 13 C -0.215 4.215 14 S 0.078 5.922 15 C -0.218 4.218 16 C -0.145 4.145 17 C -0.053 4.053 18 C -0.291 4.291 19 C 0.150 3.850 20 O -0.334 6.334 21 C 0.025 3.975 22 H 0.038 0.962 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.292 0.708 28 H 0.184 0.816 29 H 0.153 0.847 30 H 0.126 0.874 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 2.504 -4.353 5.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.080 4.080 3 C -0.233 4.233 4 C 0.145 3.855 5 C -0.519 4.519 6 H 0.104 0.896 7 C -0.175 4.175 8 N -0.419 5.419 9 Si 0.776 3.224 10 H -0.180 1.180 11 H -0.188 1.188 12 H -0.188 1.188 13 C -0.331 4.331 14 S 0.343 5.657 15 C -0.352 4.352 16 C -0.177 4.177 17 C -0.061 4.061 18 C -0.314 4.314 19 C 0.104 3.896 20 O -0.249 6.249 21 C -0.070 4.070 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.201 0.799 29 H 0.171 0.829 30 H 0.144 0.856 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.701 2.372 -2.667 3.953 hybrid contribution 0.285 0.267 -0.897 0.979 sum -1.416 2.639 -3.564 4.655 Atomic orbital electron populations 1.21587 0.95243 1.01122 1.00547 1.19877 0.95695 0.92155 1.00270 1.19322 1.16706 0.97736 0.89533 1.16865 0.87509 0.88314 0.92773 1.19504 1.11036 1.26186 0.95216 0.89633 1.26493 0.94062 0.92731 1.04179 1.69831 1.04216 1.31790 1.36067 0.85520 0.80132 0.79243 0.77482 1.18039 1.18845 1.18792 1.22856 1.16265 0.99070 0.94946 1.83605 1.69940 1.02180 1.09948 1.25603 1.07765 1.04217 0.97597 1.21021 1.04451 0.94553 0.97641 1.19284 0.99987 0.93907 0.92967 1.20455 1.18953 0.95437 0.96515 1.18402 0.95448 0.90686 0.85090 1.85995 1.83368 1.42411 1.13085 1.23155 1.00850 0.98069 0.84928 0.94276 0.93650 0.91458 0.92724 0.92859 0.89741 0.79897 0.82923 0.85583 0.92726 0.93068 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.90 71.98 0.71 -4.07 16 2 C -0.04 -1.84 5.27 29.85 0.16 -1.69 16 3 C -0.23 -11.31 5.20 -19.34 -0.10 -11.41 16 4 C 0.15 8.07 5.37 -21.13 -0.11 7.96 16 5 C -0.49 -25.66 7.61 23.33 0.18 -25.48 16 6 H 0.09 4.37 7.00 -2.91 -0.02 4.35 16 7 C 0.04 2.14 4.22 85.24 0.36 2.50 16 8 N -0.79 -40.61 10.76 21.82 0.23 -40.37 16 9 Si 0.96 37.95 29.62 68.60 2.03 39.98 16 10 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 11 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 12 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 13 C -0.22 -11.20 5.75 23.54 0.14 -11.06 16 14 S 0.08 3.61 19.89 -56.49 -1.12 2.49 16 15 C -0.22 -8.34 11.02 67.00 0.74 -7.60 16 16 C -0.14 -5.76 10.39 23.32 0.24 -5.52 16 17 C -0.05 -2.54 6.03 -20.37 -0.12 -2.66 16 18 C -0.29 -13.04 9.10 23.05 0.21 -12.83 16 19 C 0.15 6.89 6.63 22.30 0.15 7.03 16 20 O -0.33 -13.14 9.50 -93.06 -0.88 -14.02 16 21 C 0.02 0.69 9.80 113.37 1.11 1.80 16 22 H 0.04 1.54 7.67 -2.39 -0.02 1.52 16 23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 25 H 0.05 2.25 7.51 -2.39 -0.02 2.23 16 26 H 0.05 2.41 6.98 -2.39 -0.02 2.40 16 27 H 0.29 13.62 8.31 -92.70 -0.77 12.85 16 28 H 0.18 5.40 8.06 -2.91 -0.02 5.38 16 29 H 0.15 4.92 8.06 -2.91 -0.02 4.89 16 30 H 0.13 4.79 6.19 -2.91 -0.02 4.77 16 31 H 0.05 1.44 7.64 -2.39 -0.02 1.42 16 32 H 0.05 1.38 7.63 -2.39 -0.02 1.37 16 33 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -60.74 286.83 5.03 -55.71 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.12 Total: 19.24 kcal Atomic # 6 Polarization: -66.68 SS G_CDS: 3.65 Total: -63.02 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.23 Total: -40.37 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.88 Total: -14.02 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.12 Total: 2.49 kcal Total: -60.74 5.03 -55.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396304255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.581 kcal (2) G-P(sol) polarization free energy of solvation -60.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds