Wall clock time and date at job start Mon Mar 30 2020 06:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47363 * 2 1 4 4 C 1.35952 * 119.76043 * 265.00550 * 3 2 1 5 5 C 1.38935 * 120.65006 * 180.02562 * 4 3 2 6 6 C 1.37701 * 120.23421 * 0.22914 * 5 4 3 7 7 C 1.50710 * 119.85460 * 179.74585 * 6 5 4 8 8 O 1.42894 * 109.47214 * 0.02562 * 7 6 5 9 9 C 1.39605 * 120.28587 * 359.48989 * 6 5 4 10 10 S 1.75974 * 130.27358 * 180.21804 * 9 6 5 11 11 C 1.75459 * 91.79018 * 180.28938 * 10 9 6 12 12 C 1.39923 * 124.82817 * 180.02562 * 11 10 9 13 13 H 1.07991 * 120.00088 * 179.97438 * 12 11 10 14 14 C 1.40186 * 119.99806 * 359.97414 * 12 11 10 15 15 N 1.30760 * 119.99884 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00069 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47276 * 89.99907 * 16 14 12 18 18 H 1.48492 * 109.46971 * 210.00030 * 16 14 12 19 19 H 1.48505 * 109.46900 * 330.00201 * 16 14 12 20 20 C 1.36949 * 110.34868 * 359.97438 * 11 10 9 21 21 C 1.39798 * 115.02726 * 0.02562 * 20 11 10 22 22 H 1.09002 * 109.46972 * 59.99954 * 1 2 3 23 23 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47273 * 300.00155 * 1 2 3 25 25 H 1.09005 * 109.47273 * 239.99845 * 2 1 3 26 26 H 1.08993 * 109.47258 * 120.00073 * 2 1 3 27 27 H 1.07992 * 119.67736 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.87816 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.46777 * 119.99751 * 7 6 5 30 30 H 1.08997 * 109.46875 * 239.99541 * 7 6 5 31 31 H 0.96703 * 114.00153 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99743 * 180.02562 * 15 14 12 33 33 H 1.07996 * 122.48287 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3542 2.0228 -1.1757 5 6 2.8196 3.3317 -1.1972 6 6 2.9651 4.0352 -0.0224 7 6 3.4761 5.4527 -0.0551 8 8 3.7351 5.8345 -1.4075 9 6 2.6363 3.4429 1.1983 10 16 2.7125 4.0890 2.8333 11 6 2.1174 2.5854 3.5142 12 6 1.9079 2.3535 4.8781 13 1 1.5376 1.3957 5.2123 14 6 2.1785 3.3645 5.8107 15 7 2.6264 4.5245 5.4060 16 14 1.8995 3.0547 7.6316 17 1 3.1405 2.5077 8.2365 18 1 1.5430 4.3309 8.3018 19 1 0.7932 2.0792 7.8038 20 6 1.8861 1.6715 2.5210 21 6 2.1656 2.1208 1.2270 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.2471 1.4783 -2.1021 28 1 3.0720 3.7976 -2.1383 29 1 2.7271 6.1188 0.3730 30 1 4.3966 5.5205 0.5247 31 1 4.0678 6.7373 -1.5045 32 1 2.8140 5.2239 6.0513 33 1 1.5160 0.6771 2.7224 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396304585.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:44 Heat of formation + Delta-G solvation = -50.011712 kcal Electronic energy + Delta-G solvation = -16967.815019 eV Core-core repulsion = 14275.911313 eV Total energy + Delta-G solvation = -2691.903706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.67184 -36.51408 -34.91800 -33.33074 -33.02013 -29.56532 -28.86595 -25.56661 -25.06400 -22.35754 -22.13410 -20.08577 -18.89970 -17.61482 -16.85872 -15.64840 -15.42617 -14.68176 -14.49875 -14.18515 -13.83138 -13.31454 -13.05104 -12.74660 -12.50359 -12.08553 -11.80734 -11.64820 -11.45293 -11.34710 -11.12429 -10.87832 -10.52156 -10.49984 -10.36136 -9.93487 -9.83651 -9.72190 -9.29661 -9.01624 -8.07797 -7.31352 -7.17447 -6.33655 -4.65860 2.07902 2.44276 2.81859 2.84176 2.90162 3.28459 3.57850 3.59560 3.85352 4.61996 4.64520 5.06099 5.53437 5.62972 5.71933 5.80664 5.94841 6.02624 6.09145 6.25034 6.29139 6.42274 6.54411 6.67425 6.75945 6.82824 6.90249 7.22938 7.37710 7.39952 7.53112 7.59604 7.81351 7.92108 7.99164 8.14033 8.36289 8.44071 9.66032 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.019629 B = 0.007323 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.133097 B = 3822.711918 C = 5152.277798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.070 4.070 3 C -0.115 4.115 4 C -0.111 4.111 5 C -0.168 4.168 6 C -0.036 4.036 7 C 0.120 3.880 8 O -0.569 6.569 9 C -0.261 4.261 10 S 0.133 5.867 11 C 0.056 3.944 12 C -0.387 4.387 13 H 0.098 0.902 14 C 0.054 3.946 15 N -0.780 5.780 16 Si 0.937 3.063 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.257 1.257 20 C -0.360 4.360 21 C 0.026 3.974 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.372 0.628 32 H 0.300 0.700 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 0.837 -3.042 3.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.117 4.117 4 C -0.131 4.131 5 C -0.188 4.188 6 C -0.041 4.041 7 C 0.042 3.958 8 O -0.373 6.373 9 C -0.375 4.375 10 S 0.393 5.607 11 C -0.064 4.064 12 C -0.421 4.421 13 H 0.116 0.884 14 C -0.167 4.167 15 N -0.406 5.406 16 Si 0.760 3.240 17 H -0.188 1.188 18 H -0.196 1.196 19 H -0.180 1.180 20 C -0.385 4.385 21 C 0.018 3.982 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.131 0.869 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.218 0.782 32 H 0.113 0.887 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.427 1.793 -2.419 3.041 hybrid contribution -0.320 -0.853 0.306 0.961 sum 0.107 0.940 -2.113 2.315 Atomic orbital electron populations 1.21706 0.95874 1.00268 1.02080 1.20303 0.95392 0.93945 1.01145 1.19338 1.04632 0.95562 0.92192 1.20152 1.01579 0.95211 0.96165 1.20286 1.06937 0.94751 0.96814 1.18709 1.00097 0.93342 0.91924 1.20891 0.98546 0.93996 0.82321 1.86478 1.88602 1.34947 1.27320 1.23352 1.14036 0.99937 1.00217 1.84683 1.70188 1.15593 0.90258 1.21410 0.94451 0.94112 0.96378 1.19298 1.33517 0.99895 0.89400 0.88435 1.26294 0.92691 0.93961 1.03777 1.68628 1.30061 1.03778 1.38160 0.85780 0.80158 0.79289 0.78764 1.18832 1.19624 1.18031 1.19551 1.27385 1.01481 0.90036 1.17763 0.95757 0.91731 0.92939 0.93316 0.93626 0.92228 0.92724 0.91717 0.88172 0.86897 0.92871 0.92854 0.78218 0.88682 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.89 37.15 0.37 -1.99 16 2 C -0.07 -1.28 5.78 -27.88 -0.16 -1.44 16 3 C -0.12 -2.51 5.17 -104.04 -0.54 -3.05 16 4 C -0.11 -2.28 9.55 -40.14 -0.38 -2.66 16 5 C -0.17 -3.56 9.37 -39.52 -0.37 -3.93 16 6 C -0.04 -0.80 5.90 -104.30 -0.62 -1.42 16 7 C 0.12 2.19 7.11 36.01 0.26 2.45 16 8 O -0.57 -9.14 12.11 -35.23 -0.43 -9.57 16 9 C -0.26 -6.36 6.31 -38.27 -0.24 -6.60 16 10 S 0.13 3.25 19.80 -107.50 -2.13 1.12 16 11 C 0.06 1.45 6.11 -39.42 -0.24 1.21 16 12 C -0.39 -9.56 9.27 -38.22 -0.35 -9.92 16 13 H 0.10 2.28 7.85 -52.49 -0.41 1.87 16 14 C 0.05 1.22 5.50 -17.28 -0.10 1.12 16 15 N -0.78 -18.12 10.58 55.56 0.59 -17.53 16 16 Si 0.94 16.91 29.56 -169.99 -5.03 11.88 16 17 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 18 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 19 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 20 C -0.36 -9.09 9.57 -39.47 -0.38 -9.47 16 21 C 0.03 0.64 5.82 -107.12 -0.62 0.02 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.05 0.88 8.02 -51.93 -0.42 0.46 16 26 H 0.06 1.20 7.38 -51.93 -0.38 0.82 16 27 H 0.10 1.77 8.03 -52.49 -0.42 1.35 16 28 H 0.11 2.24 6.97 -52.49 -0.37 1.88 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.37 3.84 9.12 45.56 0.42 4.26 16 32 H 0.30 6.23 8.29 -40.82 -0.34 5.89 16 33 H 0.11 2.58 7.49 -52.49 -0.39 2.19 16 LS Contribution 292.61 15.07 4.41 4.41 Total: -1.00 -28.05 292.61 -9.19 -37.23 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -3.22 Total: 8.13 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: -3.38 Total: -35.68 kcal Atomic # 7 Polarization: -18.12 SS G_CDS: 0.59 Total: -17.53 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.43 Total: -9.57 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -2.13 Total: 1.12 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.05 -9.19 -37.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396304585.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.778 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds