Wall clock time and date at job start Mon Mar 30 2020 06:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47363 * 2 1 4 4 C 1.35952 * 119.76043 * 265.00550 * 3 2 1 5 5 C 1.38935 * 120.65006 * 180.02562 * 4 3 2 6 6 C 1.37701 * 120.23421 * 0.22914 * 5 4 3 7 7 C 1.50710 * 119.85460 * 179.74585 * 6 5 4 8 8 O 1.42894 * 109.47214 * 0.02562 * 7 6 5 9 9 C 1.39605 * 120.28587 * 359.48989 * 6 5 4 10 10 S 1.75974 * 130.27358 * 180.21804 * 9 6 5 11 11 C 1.75459 * 91.79018 * 180.28938 * 10 9 6 12 12 C 1.39923 * 124.82817 * 180.02562 * 11 10 9 13 13 H 1.07991 * 120.00088 * 179.97438 * 12 11 10 14 14 C 1.40186 * 119.99806 * 359.97414 * 12 11 10 15 15 N 1.30760 * 119.99884 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00069 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47276 * 89.99907 * 16 14 12 18 18 H 1.48492 * 109.46971 * 210.00030 * 16 14 12 19 19 H 1.48505 * 109.46900 * 330.00201 * 16 14 12 20 20 C 1.36949 * 110.34868 * 359.97438 * 11 10 9 21 21 C 1.39798 * 115.02726 * 0.02562 * 20 11 10 22 22 H 1.09002 * 109.46972 * 59.99954 * 1 2 3 23 23 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47273 * 300.00155 * 1 2 3 25 25 H 1.09005 * 109.47273 * 239.99845 * 2 1 3 26 26 H 1.08993 * 109.47258 * 120.00073 * 2 1 3 27 27 H 1.07992 * 119.67736 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.87816 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.46777 * 119.99751 * 7 6 5 30 30 H 1.08997 * 109.46875 * 239.99541 * 7 6 5 31 31 H 0.96703 * 114.00153 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99743 * 180.02562 * 15 14 12 33 33 H 1.07996 * 122.48287 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3542 2.0228 -1.1757 5 6 2.8196 3.3317 -1.1972 6 6 2.9651 4.0352 -0.0224 7 6 3.4761 5.4527 -0.0551 8 8 3.7351 5.8345 -1.4075 9 6 2.6363 3.4429 1.1983 10 16 2.7125 4.0890 2.8333 11 6 2.1174 2.5854 3.5142 12 6 1.9079 2.3535 4.8781 13 1 1.5376 1.3957 5.2123 14 6 2.1785 3.3645 5.8107 15 7 2.6264 4.5245 5.4060 16 14 1.8995 3.0547 7.6316 17 1 3.1405 2.5077 8.2365 18 1 1.5430 4.3309 8.3018 19 1 0.7932 2.0792 7.8038 20 6 1.8861 1.6715 2.5210 21 6 2.1656 2.1208 1.2270 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.2471 1.4783 -2.1021 28 1 3.0720 3.7976 -2.1383 29 1 2.7271 6.1188 0.3730 30 1 4.3966 5.5205 0.5247 31 1 4.0678 6.7373 -1.5045 32 1 2.8140 5.2239 6.0513 33 1 1.5160 0.6771 2.7224 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396304585.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:44 Heat of formation + Delta-G solvation = -65.786238 kcal Electronic energy + Delta-G solvation = -16968.499054 eV Core-core repulsion = 14275.911313 eV Total energy + Delta-G solvation = -2692.587741 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34639 -37.90784 -36.66880 -34.90412 -34.69480 -31.11643 -30.61809 -27.23268 -26.67511 -24.10317 -23.62177 -21.77722 -20.66687 -19.36159 -18.27108 -17.32112 -17.04491 -16.32447 -15.92052 -15.73703 -15.51634 -14.81455 -14.61362 -14.28664 -14.13446 -13.63333 -13.46144 -13.28985 -13.07370 -12.87451 -12.76068 -12.38265 -12.02163 -11.98313 -11.93482 -11.61640 -11.38389 -11.23090 -10.97803 -10.84217 -9.81031 -9.12795 -8.90000 -8.16551 -6.51931 0.34122 0.71426 1.33380 1.34794 1.44563 1.52498 1.87943 1.91293 2.14132 2.86150 3.26765 3.37316 4.03082 4.15724 4.28324 4.36640 4.52044 4.54667 4.63199 4.63831 4.84576 4.92191 4.99806 5.05365 5.16051 5.18439 5.39148 5.52249 5.59623 5.64551 5.85193 5.87501 6.00949 6.13308 6.37618 6.56404 6.60951 6.92343 7.96939 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.019629 B = 0.007323 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.133097 B = 3822.711918 C = 5152.277798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 C -0.125 4.125 4 C -0.111 4.111 5 C -0.167 4.167 6 C -0.056 4.056 7 C 0.129 3.871 8 O -0.575 6.575 9 C -0.284 4.284 10 S 0.124 5.876 11 C 0.023 3.977 12 C -0.418 4.418 13 H 0.099 0.901 14 C 0.018 3.982 15 N -0.801 5.801 16 Si 1.011 2.989 17 H -0.257 1.257 18 H -0.259 1.259 19 H -0.255 1.255 20 C -0.381 4.381 21 C -0.002 4.002 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.031 0.969 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.136 0.864 28 H 0.131 0.869 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.399 0.601 32 H 0.312 0.688 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 0.846 -3.663 3.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 C -0.127 4.127 4 C -0.131 4.131 5 C -0.187 4.187 6 C -0.060 4.060 7 C 0.051 3.949 8 O -0.383 6.383 9 C -0.398 4.398 10 S 0.384 5.616 11 C -0.096 4.096 12 C -0.451 4.451 13 H 0.117 0.883 14 C -0.201 4.201 15 N -0.428 5.428 16 Si 0.829 3.171 17 H -0.181 1.181 18 H -0.182 1.182 19 H -0.178 1.178 20 C -0.406 4.406 21 C -0.010 4.010 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.051 0.949 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.153 0.847 28 H 0.148 0.852 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.249 0.751 32 H 0.125 0.875 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.439 1.827 -3.077 3.605 hybrid contribution -0.288 -0.822 0.343 0.936 sum 0.151 1.005 -2.734 2.916 Atomic orbital electron populations 1.21645 0.94650 1.01886 1.01093 1.20355 0.96393 0.91965 1.01935 1.19760 1.04205 0.97190 0.91553 1.20567 1.00211 0.95232 0.97101 1.20636 1.05839 0.95078 0.97122 1.19165 1.00011 0.95428 0.91412 1.20673 0.98646 0.92040 0.83533 1.86395 1.88830 1.37390 1.25688 1.23593 1.15136 1.00328 1.00756 1.84371 1.70738 1.15478 0.91034 1.21795 0.95459 0.94965 0.97368 1.19613 1.34823 1.00940 0.89721 0.88292 1.27246 0.91585 0.93144 1.08075 1.68652 1.29542 1.04506 1.40073 0.84718 0.80142 0.79592 0.72624 1.18130 1.18246 1.17844 1.19638 1.28684 1.01429 0.90813 1.18096 0.96601 0.92517 0.93738 0.92508 0.90718 0.94937 0.89838 0.92916 0.84653 0.85167 0.92485 0.92444 0.75138 0.87495 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.89 71.98 0.71 -3.61 16 2 C -0.07 -2.43 5.78 29.85 0.17 -2.26 16 3 C -0.13 -5.38 5.17 -19.49 -0.10 -5.48 16 4 C -0.11 -4.35 9.55 21.91 0.21 -4.14 16 5 C -0.17 -6.78 9.37 22.31 0.21 -6.57 16 6 C -0.06 -2.44 5.90 -19.66 -0.12 -2.55 16 7 C 0.13 4.58 7.11 71.24 0.51 5.09 16 8 O -0.57 -17.09 12.11 -148.98 -1.80 -18.89 16 9 C -0.28 -14.11 6.31 23.12 0.15 -13.97 16 10 S 0.12 6.29 19.80 -56.49 -1.12 5.17 16 11 C 0.02 1.26 6.11 22.38 0.14 1.39 16 12 C -0.42 -21.34 9.27 23.15 0.21 -21.13 16 13 H 0.10 4.82 7.85 -2.92 -0.02 4.80 16 14 C 0.02 0.82 5.50 85.33 0.47 1.29 16 15 N -0.80 -37.58 10.58 21.87 0.23 -37.35 16 16 Si 1.01 34.11 29.56 68.60 2.03 36.14 16 17 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 18 H -0.26 -8.13 7.11 99.48 0.71 -7.42 16 19 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 20 C -0.38 -20.19 9.57 22.34 0.21 -19.97 16 21 C 0.00 -0.10 5.82 -21.48 -0.13 -0.22 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.08 2.44 8.02 -2.38 -0.02 2.42 16 26 H 0.05 1.96 7.38 -2.39 -0.02 1.95 16 27 H 0.14 4.28 8.03 -2.91 -0.02 4.25 16 28 H 0.13 4.81 6.97 -2.91 -0.02 4.79 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.40 7.11 9.12 -74.06 -0.68 6.44 16 32 H 0.31 12.84 8.29 -92.71 -0.77 12.07 16 33 H 0.10 5.24 7.49 -2.91 -0.02 5.22 16 Total: -1.00 -61.74 292.61 2.44 -59.30 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.45 Total: 27.76 kcal Atomic # 6 Polarization: -74.79 SS G_CDS: 2.65 Total: -72.14 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.23 Total: -37.35 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -1.80 Total: -18.89 kcal Atomic # 14 Polarization: 34.11 SS G_CDS: 2.03 Total: 36.14 kcal Atomic # 16 Polarization: 6.29 SS G_CDS: -1.12 Total: 5.17 kcal Total: -61.74 2.44 -59.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396304585.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.484 kcal (2) G-P(sol) polarization free energy of solvation -61.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds