Wall clock time and date at job start Mon Mar 30 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47377 * 2 1 4 4 C 1.38653 * 119.93958 * 90.00055 * 3 2 1 5 5 C 1.37354 * 120.23929 * 180.02562 * 4 3 2 6 6 C 1.40852 * 120.43773 * 359.97303 * 5 4 3 7 7 C 1.46566 * 128.70310 * 179.97438 * 6 5 4 8 8 C 1.40664 * 123.23991 * 0.02562 * 7 6 5 9 9 H 1.08006 * 119.99915 * 33.83470 * 8 7 6 10 10 C 1.39557 * 120.00334 * 213.83182 * 8 7 6 11 11 N 1.31257 * 120.00076 * 20.63054 * 10 8 7 12 12 Si 1.86801 * 120.00400 * 200.63814 * 10 8 7 13 13 H 1.48497 * 109.47466 * 59.99543 * 12 10 8 14 14 H 1.48497 * 109.47416 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.46720 * 299.99787 * 12 10 8 16 16 C 1.37464 * 113.52046 * 180.02562 * 7 6 5 17 17 O 1.35248 * 124.56395 * 180.02562 * 16 7 6 18 18 C 1.42906 * 116.99876 * 180.02562 * 17 16 7 19 19 S 1.75174 * 110.86406 * 359.97438 * 16 7 6 20 20 C 1.39279 * 119.07061 * 0.02925 * 6 5 4 21 21 C 1.37634 * 119.94174 * 270.02412 * 3 2 1 22 22 H 1.08998 * 109.47036 * 60.00062 * 1 2 3 23 23 H 1.09001 * 109.47414 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47056 * 300.00200 * 1 2 3 25 25 H 1.09000 * 109.47056 * 239.99800 * 2 1 3 26 26 H 1.09004 * 109.47381 * 120.00200 * 2 1 3 27 27 H 1.07988 * 119.88077 * 0.02562 * 4 3 2 28 28 H 1.07993 * 119.78003 * 179.69823 * 5 4 3 29 29 H 0.96993 * 120.00234 * 180.02562 * 11 10 8 30 30 H 1.08996 * 109.46691 * 300.00360 * 18 17 16 31 31 H 1.08998 * 109.47014 * 59.99882 * 18 17 16 32 32 H 1.09001 * 109.46834 * 180.02562 * 18 17 16 33 33 H 1.08005 * 119.76259 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2631 2.0732 1.2015 5 6 2.7205 3.3683 1.2087 6 6 2.9605 4.0471 -0.0020 7 6 3.4434 5.4159 -0.2051 8 6 3.7517 6.2897 0.8532 9 1 4.1667 5.9007 1.7713 10 6 3.5214 7.6594 0.7169 11 7 2.6730 8.0957 -0.1846 12 14 4.4208 8.8719 1.8171 13 1 5.8852 8.7324 1.6143 14 1 4.0027 10.2551 1.4750 15 1 4.0888 8.5919 3.2373 16 6 3.5661 5.7635 -1.5294 17 8 3.9920 6.9692 -1.9699 18 6 4.0575 7.1567 -3.3851 19 16 3.0978 4.4339 -2.5693 20 6 2.7269 3.3867 -1.2058 21 6 2.2609 2.0686 -1.1926 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.0825 1.5613 2.1350 28 1 2.8930 3.8710 2.1488 29 1 2.5132 9.0477 -0.2796 30 1 4.7436 6.4280 -3.8167 31 1 3.0655 7.0212 -3.8158 32 1 4.4139 8.1637 -3.6020 33 1 2.0793 1.5549 -2.1252 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396305007.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:45 Heat of formation + Delta-G solvation = -6.824196 kcal Electronic energy + Delta-G solvation = -17111.683203 eV Core-core repulsion = 14421.652248 eV Total energy + Delta-G solvation = -2690.030955 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.75961 -37.22291 -34.90585 -33.12815 -31.23385 -30.07601 -27.67301 -26.35161 -25.14403 -23.16874 -21.93442 -20.72152 -19.49987 -17.27897 -16.62713 -15.30732 -15.24998 -14.77139 -14.54643 -14.35109 -13.77944 -13.46944 -13.16838 -12.90763 -12.65036 -12.32495 -12.14181 -11.70245 -11.49801 -11.21761 -10.99599 -10.86856 -10.71235 -10.54986 -10.50599 -10.15255 -9.90118 -9.30097 -9.25284 -8.92062 -8.28572 -7.04628 -6.61471 -6.35011 -4.06563 1.85827 2.03583 2.63634 3.10422 3.20809 3.21843 3.26210 3.74846 4.16665 4.55236 4.75138 5.13829 5.22936 5.33615 5.57989 5.62339 5.73423 5.83539 5.93827 5.98706 6.00109 6.02213 6.17687 6.26351 6.30153 6.37595 6.60324 6.78620 7.11277 7.15832 7.24296 7.36809 7.70073 7.84456 8.50832 8.56282 9.06895 9.09154 10.51549 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.007037 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.074435 B = 3978.172531 C = 4934.990156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.101 4.101 4 C -0.131 4.131 5 C -0.078 4.078 6 C -0.032 4.032 7 C 0.049 3.951 8 C -0.444 4.444 9 H 0.073 0.927 10 C 0.081 3.919 11 N -0.774 5.774 12 Si 0.901 3.099 13 H -0.268 1.268 14 H -0.283 1.283 15 H -0.271 1.271 16 C -0.099 4.099 17 O -0.238 6.238 18 C 0.030 3.970 19 S -0.036 6.036 20 C -0.133 4.133 21 C -0.086 4.086 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.274 0.726 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.258 -8.193 -1.475 8.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.103 4.103 4 C -0.152 4.152 5 C -0.098 4.098 6 C -0.041 4.041 7 C 0.040 3.960 8 C -0.476 4.476 9 H 0.092 0.908 10 C -0.137 4.137 11 N -0.400 5.400 12 Si 0.726 3.274 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.196 1.196 16 C -0.258 4.258 17 O -0.150 6.150 18 C -0.068 4.068 19 S 0.222 5.778 20 C -0.248 4.248 21 C -0.110 4.110 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.139 0.861 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.342 -7.887 -3.020 8.551 hybrid contribution 0.268 0.927 1.483 1.770 sum -1.074 -6.960 -1.537 7.208 Atomic orbital electron populations 1.21755 0.95359 1.00879 1.02318 1.20401 0.95682 0.93111 1.02001 1.19397 1.02357 0.95756 0.92809 1.20598 1.02894 0.94957 0.96793 1.20888 0.98330 0.93576 0.97013 1.19396 0.98443 0.94340 0.91919 1.16731 0.99099 0.89515 0.90670 1.18482 1.38352 0.90900 0.99885 0.90846 1.25541 0.93789 0.98866 0.95537 1.69921 1.25092 1.15761 1.29242 0.86500 0.81105 0.79191 0.80577 1.19254 1.20790 1.19593 1.22456 1.22123 0.88377 0.92804 1.85955 1.81957 1.28333 1.18787 1.22783 0.99826 1.00955 0.83272 1.83090 1.75698 1.08522 1.10475 1.22072 1.08474 0.97832 0.96400 1.20132 1.01415 0.92329 0.97125 0.92671 0.93048 0.92580 0.91733 0.91533 0.86850 0.86093 0.91584 0.94788 0.94434 0.90041 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.07 -0.95 6.06 -27.88 -0.17 -1.12 16 3 C -0.10 -1.70 5.13 -104.69 -0.54 -2.23 16 4 C -0.13 -2.30 9.67 -39.75 -0.38 -2.69 16 5 C -0.08 -1.64 9.82 -38.92 -0.38 -2.02 16 6 C -0.03 -0.77 6.00 -105.16 -0.63 -1.40 16 7 C 0.05 1.32 5.51 -105.91 -0.58 0.74 16 8 C -0.44 -12.12 8.89 -38.17 -0.34 -12.46 16 9 H 0.07 1.92 7.92 -52.48 -0.42 1.50 16 10 C 0.08 2.13 4.71 -17.31 -0.08 2.05 16 11 N -0.77 -21.19 11.07 55.53 0.61 -20.57 16 12 Si 0.90 19.94 29.61 -169.99 -5.03 14.91 16 13 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 16 C -0.10 -2.59 6.64 30.45 0.20 -2.39 16 17 O -0.24 -6.11 7.76 -17.44 -0.14 -6.24 16 18 C 0.03 0.60 10.23 101.05 1.03 1.63 16 19 S -0.04 -0.82 21.83 -107.50 -2.35 -3.16 16 20 C -0.13 -2.97 6.41 -38.61 -0.25 -3.22 16 21 C -0.09 -1.63 9.70 -39.21 -0.38 -2.01 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 26 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.12 2.41 8.03 -52.49 -0.42 1.99 16 29 H 0.27 6.97 8.30 -40.82 -0.34 6.63 16 30 H 0.03 0.63 8.02 -51.93 -0.42 0.21 16 31 H 0.04 0.73 8.02 -51.93 -0.42 0.32 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 295.39 15.07 4.45 4.45 Total: -1.00 -29.52 295.39 -8.76 -38.29 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.18 Total: -1.22 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -2.13 Total: -26.45 kcal Atomic # 7 Polarization: -21.19 SS G_CDS: 0.61 Total: -20.57 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.14 Total: -6.24 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.35 Total: -3.16 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.52 -8.76 -38.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396305007.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.463 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds