Wall clock time and date at job start Mon Mar 30 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47377 * 2 1 4 4 C 1.38653 * 119.93958 * 90.00055 * 3 2 1 5 5 C 1.37354 * 120.23929 * 180.02562 * 4 3 2 6 6 C 1.40852 * 120.43773 * 359.97303 * 5 4 3 7 7 C 1.46566 * 128.70310 * 179.97438 * 6 5 4 8 8 C 1.40664 * 123.23991 * 0.02562 * 7 6 5 9 9 H 1.08006 * 119.99915 * 33.83470 * 8 7 6 10 10 C 1.39557 * 120.00334 * 213.83182 * 8 7 6 11 11 N 1.31257 * 120.00076 * 20.63054 * 10 8 7 12 12 Si 1.86801 * 120.00400 * 200.63814 * 10 8 7 13 13 H 1.48497 * 109.47466 * 59.99543 * 12 10 8 14 14 H 1.48497 * 109.47416 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.46720 * 299.99787 * 12 10 8 16 16 C 1.37464 * 113.52046 * 180.02562 * 7 6 5 17 17 O 1.35248 * 124.56395 * 180.02562 * 16 7 6 18 18 C 1.42906 * 116.99876 * 180.02562 * 17 16 7 19 19 S 1.75174 * 110.86406 * 359.97438 * 16 7 6 20 20 C 1.39279 * 119.07061 * 0.02925 * 6 5 4 21 21 C 1.37634 * 119.94174 * 270.02412 * 3 2 1 22 22 H 1.08998 * 109.47036 * 60.00062 * 1 2 3 23 23 H 1.09001 * 109.47414 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47056 * 300.00200 * 1 2 3 25 25 H 1.09000 * 109.47056 * 239.99800 * 2 1 3 26 26 H 1.09004 * 109.47381 * 120.00200 * 2 1 3 27 27 H 1.07988 * 119.88077 * 0.02562 * 4 3 2 28 28 H 1.07993 * 119.78003 * 179.69823 * 5 4 3 29 29 H 0.96993 * 120.00234 * 180.02562 * 11 10 8 30 30 H 1.08996 * 109.46691 * 300.00360 * 18 17 16 31 31 H 1.08998 * 109.47014 * 59.99882 * 18 17 16 32 32 H 1.09001 * 109.46834 * 180.02562 * 18 17 16 33 33 H 1.08005 * 119.76259 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2631 2.0732 1.2015 5 6 2.7205 3.3683 1.2087 6 6 2.9605 4.0471 -0.0020 7 6 3.4434 5.4159 -0.2051 8 6 3.7517 6.2897 0.8532 9 1 4.1667 5.9007 1.7713 10 6 3.5214 7.6594 0.7169 11 7 2.6730 8.0957 -0.1846 12 14 4.4208 8.8719 1.8171 13 1 5.8852 8.7324 1.6143 14 1 4.0027 10.2551 1.4750 15 1 4.0888 8.5919 3.2373 16 6 3.5661 5.7635 -1.5294 17 8 3.9920 6.9692 -1.9699 18 6 4.0575 7.1567 -3.3851 19 16 3.0978 4.4339 -2.5693 20 6 2.7269 3.3867 -1.2058 21 6 2.2609 2.0686 -1.1926 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.0825 1.5613 2.1350 28 1 2.8930 3.8710 2.1488 29 1 2.5132 9.0477 -0.2796 30 1 4.7436 6.4280 -3.8167 31 1 3.0655 7.0212 -3.8158 32 1 4.4139 8.1637 -3.6020 33 1 2.0793 1.5549 -2.1252 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396305007.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:44 Heat of formation + Delta-G solvation = -22.300067 kcal Electronic energy + Delta-G solvation = -17112.354287 eV Core-core repulsion = 14421.652248 eV Total energy + Delta-G solvation = -2690.702039 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31830 -39.02390 -36.50450 -34.79994 -32.76763 -31.64133 -29.20978 -28.12191 -26.84883 -24.50999 -23.50607 -22.24904 -21.19699 -19.01879 -18.51841 -16.89800 -16.84009 -16.54602 -16.13491 -15.96204 -15.23612 -14.99091 -14.59316 -14.24678 -14.16980 -13.95606 -13.65737 -13.23829 -12.98359 -12.85699 -12.63257 -12.47519 -12.24221 -12.03297 -11.87612 -11.70319 -11.48280 -11.09870 -10.94835 -10.74322 -9.94947 -8.74003 -8.53239 -8.20457 -6.06380 0.23860 0.47611 0.92373 1.30968 1.40584 1.41654 1.50650 1.96650 2.32834 2.87352 3.03920 3.40035 3.95115 4.05723 4.29356 4.36883 4.39412 4.43679 4.59547 4.62452 4.65997 4.70706 4.79856 4.97190 5.15351 5.22309 5.29378 5.33659 5.47868 5.49044 5.64602 5.76610 5.91675 6.19564 6.52499 6.69435 7.08224 7.21744 8.58872 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.007037 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.074435 B = 3978.172531 C = 4934.990156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.084 4.084 4 C -0.118 4.118 5 C -0.097 4.097 6 C -0.073 4.073 7 C 0.011 3.989 8 C -0.478 4.478 9 H 0.069 0.931 10 C 0.040 3.960 11 N -0.809 5.809 12 Si 0.968 3.032 13 H -0.270 1.270 14 H -0.274 1.274 15 H -0.261 1.261 16 C -0.121 4.121 17 O -0.269 6.269 18 C 0.026 3.974 19 S -0.013 6.013 20 C -0.151 4.151 21 C -0.093 4.093 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.152 0.848 28 H 0.118 0.882 29 H 0.276 0.724 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.107 0.893 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.723 -10.434 -1.096 10.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.087 4.087 4 C -0.138 4.138 5 C -0.117 4.117 6 C -0.081 4.081 7 C 0.002 3.998 8 C -0.511 4.511 9 H 0.087 0.913 10 C -0.174 4.174 11 N -0.437 5.437 12 Si 0.791 3.209 13 H -0.195 1.195 14 H -0.199 1.199 15 H -0.185 1.185 16 C -0.280 4.280 17 O -0.183 6.183 18 C -0.072 4.072 19 S 0.245 5.755 20 C -0.266 4.266 21 C -0.116 4.116 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.170 0.830 28 H 0.136 0.864 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.812 -10.145 -2.641 10.638 hybrid contribution 0.361 1.407 1.337 1.974 sum -1.451 -8.738 -1.304 8.953 Atomic orbital electron populations 1.21749 0.94330 1.02485 1.01653 1.20523 0.96346 0.90058 1.04024 1.19981 0.99425 0.97639 0.91609 1.21045 1.00358 0.93468 0.98942 1.21059 0.99509 0.95121 0.95969 1.19552 1.00690 0.93942 0.93911 1.17282 0.99760 0.91363 0.91378 1.18723 1.39941 0.92101 1.00308 0.91312 1.26311 0.94044 1.00178 0.96910 1.69998 1.26443 1.16065 1.31149 0.85468 0.79334 0.77033 0.79074 1.19515 1.19869 1.18510 1.22824 1.21895 0.89327 0.93915 1.85883 1.82095 1.28637 1.21638 1.23020 1.00299 1.02876 0.80976 1.82687 1.75888 1.07106 1.09782 1.22406 1.09342 0.99230 0.95643 1.20518 1.00888 0.91006 0.99219 0.93660 0.90378 0.93018 0.90110 0.89254 0.82989 0.86403 0.91400 0.93509 0.94433 0.87501 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.89 71.98 0.71 -2.04 16 2 C -0.07 -1.49 6.06 29.85 0.18 -1.31 16 3 C -0.08 -2.55 5.13 -19.91 -0.10 -2.66 16 4 C -0.12 -3.83 9.67 22.16 0.21 -3.61 16 5 C -0.10 -4.06 9.82 22.70 0.22 -3.84 16 6 C -0.07 -3.60 6.00 -20.22 -0.12 -3.72 16 7 C 0.01 0.65 5.51 -20.70 -0.11 0.53 16 8 C -0.48 -27.37 8.89 23.18 0.21 -27.16 16 9 H 0.07 3.80 7.92 -2.91 -0.02 3.77 16 10 C 0.04 2.19 4.71 85.10 0.40 2.59 16 11 N -0.81 -45.93 11.07 21.78 0.24 -45.69 16 12 Si 0.97 42.07 29.61 68.60 2.03 44.10 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 16 C -0.12 -6.59 6.64 67.64 0.45 -6.14 16 17 O -0.27 -14.30 7.76 -85.31 -0.66 -14.96 16 18 C 0.03 1.03 10.23 113.37 1.16 2.19 16 19 S -0.01 -0.57 21.83 -56.49 -1.23 -1.80 16 20 C -0.15 -6.79 6.41 22.90 0.15 -6.64 16 21 C -0.09 -3.31 9.70 22.51 0.22 -3.09 16 22 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 24 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.47 8.08 -2.39 -0.02 1.46 16 26 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 27 H 0.15 3.75 8.06 -2.92 -0.02 3.72 16 28 H 0.12 4.84 8.03 -2.91 -0.02 4.82 16 29 H 0.28 14.52 8.30 -92.71 -0.77 13.75 16 30 H 0.05 1.74 8.02 -2.39 -0.02 1.72 16 31 H 0.04 1.49 8.02 -2.39 -0.02 1.47 16 32 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 33 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -67.11 295.39 5.05 -62.05 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 1.10 Total: 11.20 kcal Atomic # 6 Polarization: -58.46 SS G_CDS: 3.57 Total: -54.89 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.24 Total: -45.69 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.66 Total: -14.96 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -1.23 Total: -1.80 kcal Total: -67.11 5.05 -62.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396305007.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.752 kcal (2) G-P(sol) polarization free energy of solvation -67.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds