Wall clock time and date at job start Mon Mar 30 2020 06:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.35904 * 119.71038 * 265.00218 * 3 2 1 5 5 C 1.38926 * 120.69540 * 179.97438 * 4 3 2 6 6 C 1.38113 * 120.17003 * 359.97438 * 5 4 3 7 7 O 1.35983 * 119.90135 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00070 * 0.02562 * 7 6 5 9 9 C 1.40035 * 120.19116 * 0.04412 * 6 5 4 10 10 S 1.75985 * 130.26116 * 179.97438 * 9 6 5 11 11 C 1.75464 * 91.77533 * 180.02562 * 10 9 6 12 12 C 1.39953 * 124.83659 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99658 * 180.02562 * 12 11 10 14 14 C 1.40168 * 120.00258 * 0.02792 * 12 11 10 15 15 N 1.30764 * 119.99824 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99799 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47349 * 60.00555 * 16 14 12 18 18 H 1.48509 * 109.46807 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47281 * 299.99868 * 16 14 12 20 20 C 1.36944 * 110.31934 * 359.97438 * 11 10 9 21 21 C 1.39804 * 115.02711 * 359.71529 * 20 11 10 22 22 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 27 27 H 1.07998 * 119.65657 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.91327 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.46772 * 299.99221 * 8 7 6 30 30 H 1.08991 * 109.47373 * 59.99535 * 8 7 6 31 31 H 1.08997 * 109.47198 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99887 * 179.97438 * 15 14 12 33 33 H 1.08004 * 122.49120 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3537 2.0216 -1.1759 5 6 2.8182 3.3308 -1.1997 6 6 2.9582 4.0391 -0.0224 7 8 3.4128 5.3204 -0.0521 8 6 3.7250 5.8684 -1.3344 9 6 2.6339 3.4416 1.2018 10 16 2.7095 4.0863 2.8376 11 6 2.1164 2.5811 3.5168 12 6 1.9080 2.3468 4.8807 13 1 1.5397 1.3877 5.2137 14 6 2.1773 3.3568 5.8146 15 7 2.6237 4.5179 5.4114 16 14 1.8985 3.0440 7.6350 17 1 2.7484 1.9098 8.0783 18 1 2.2553 4.2617 8.4067 19 1 0.4698 2.7125 7.8672 20 6 1.8864 1.6685 2.5220 21 6 2.1590 2.1226 1.2282 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.2471 1.4757 -2.1016 28 1 3.0695 3.7960 -2.1414 29 1 4.5050 5.2700 -1.8051 30 1 2.8327 5.8596 -1.9603 31 1 4.0759 6.8935 -1.2157 32 1 2.8097 5.2169 6.0577 33 1 1.5176 0.6732 2.7217 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396305023.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:56 Heat of formation + Delta-G solvation = -33.880263 kcal Electronic energy + Delta-G solvation = -17037.219543 eV Core-core repulsion = 14346.015350 eV Total energy + Delta-G solvation = -2691.204194 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.18716 -37.32468 -34.86674 -33.19167 -32.50190 -29.22535 -28.23065 -26.65868 -25.18569 -22.82501 -22.23578 -20.19517 -19.16762 -17.93475 -16.70356 -15.83928 -15.21623 -15.09771 -14.85673 -13.92909 -13.80979 -13.53420 -13.04371 -12.69428 -12.40991 -12.10505 -11.99013 -11.67662 -11.46441 -11.40679 -11.14997 -10.99481 -10.77481 -10.52103 -10.45005 -10.01654 -9.98936 -9.80357 -9.28590 -8.93378 -7.84067 -7.34421 -7.14884 -6.14844 -4.68127 2.10914 2.48862 2.85010 2.85738 2.89934 3.34781 3.60185 3.60361 3.93829 4.03405 4.63393 5.08036 5.45820 5.53945 5.59966 5.67642 5.74440 5.89967 5.99768 6.05356 6.27976 6.33805 6.45512 6.52391 6.68406 6.78991 6.86047 7.04424 7.20499 7.26377 7.43453 7.55456 7.79574 7.82896 7.98734 8.31055 8.36074 8.43847 9.67648 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.007356 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.714807 B = 3805.346284 C = 5097.406181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.147 4.147 4 C -0.074 4.074 5 C -0.289 4.289 6 C 0.185 3.815 7 O -0.321 6.321 8 C 0.034 3.966 9 C -0.295 4.295 10 S 0.160 5.840 11 C 0.051 3.949 12 C -0.381 4.381 13 H 0.098 0.902 14 C 0.052 3.948 15 N -0.774 5.774 16 Si 0.938 3.062 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.259 1.259 20 C -0.359 4.359 21 C 0.054 3.946 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.302 0.698 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 -0.350 -4.700 4.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.149 4.149 4 C -0.094 4.094 5 C -0.310 4.310 6 C 0.137 3.863 7 O -0.235 6.235 8 C -0.062 4.062 9 C -0.410 4.410 10 S 0.420 5.580 11 C -0.069 4.069 12 C -0.415 4.415 13 H 0.116 0.884 14 C -0.170 4.170 15 N -0.400 5.400 16 Si 0.761 3.239 17 H -0.183 1.183 18 H -0.197 1.197 19 H -0.184 1.184 20 C -0.383 4.383 21 C 0.045 3.955 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.402 1.376 -3.836 4.095 hybrid contribution -0.489 -1.429 -0.293 1.538 sum -0.087 -0.053 -4.128 4.129 Atomic orbital electron populations 1.21720 0.96070 1.00160 1.02028 1.20235 0.95216 0.93857 1.01006 1.19212 1.07686 0.95947 0.92046 1.19835 0.99317 0.94074 0.96183 1.20392 1.17762 0.97492 0.95359 1.18143 0.93613 0.82121 0.92466 1.86074 1.80260 1.26664 1.30476 1.22856 0.99783 0.98498 0.85041 1.22842 1.18587 1.00119 0.99445 1.84923 1.69343 1.14196 0.89498 1.21565 0.94129 0.94777 0.96427 1.19303 1.33032 0.99811 0.89393 0.88402 1.26326 0.92809 0.93989 1.03855 1.68654 1.29229 1.03687 1.38403 0.85811 0.80336 0.79235 0.78496 1.18348 1.19713 1.18357 1.19559 1.27447 1.01477 0.89853 1.17627 0.94127 0.90722 0.93049 0.92243 0.93406 0.93726 0.91804 0.92898 0.88090 0.87439 0.93350 0.93349 0.89306 0.88493 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.89 37.16 0.37 -1.98 16 2 C -0.07 -1.19 5.78 -27.88 -0.16 -1.35 16 3 C -0.15 -3.18 5.18 -104.01 -0.54 -3.72 16 4 C -0.07 -1.48 9.54 -40.16 -0.38 -1.86 16 5 C -0.29 -5.91 9.04 -39.37 -0.36 -6.26 16 6 C 0.18 4.24 6.71 -38.95 -0.26 3.98 16 7 O -0.32 -6.75 10.47 -19.69 -0.21 -6.95 16 8 C 0.03 0.50 9.81 101.05 0.99 1.49 16 9 C -0.30 -7.50 6.42 -38.17 -0.25 -7.75 16 10 S 0.16 4.13 20.10 -107.50 -2.16 1.96 16 11 C 0.05 1.34 6.11 -39.41 -0.24 1.10 16 12 C -0.38 -9.47 9.27 -38.22 -0.35 -9.82 16 13 H 0.10 2.27 7.85 -52.49 -0.41 1.86 16 14 C 0.05 1.20 5.50 -17.28 -0.10 1.10 16 15 N -0.77 -18.38 10.59 55.56 0.59 -17.79 16 16 Si 0.94 17.01 29.56 -169.99 -5.03 11.98 16 17 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 18 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 19 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16 20 C -0.36 -9.13 9.57 -39.47 -0.38 -9.50 16 21 C 0.05 1.33 5.82 -107.12 -0.62 0.71 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.18 7.37 -51.93 -0.38 0.80 16 26 H 0.05 0.84 8.02 -51.93 -0.42 0.42 16 27 H 0.10 1.72 8.03 -52.49 -0.42 1.30 16 28 H 0.11 1.86 6.25 -52.49 -0.33 1.53 16 29 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 30 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.30 6.42 8.29 -40.82 -0.34 6.08 16 33 H 0.11 2.61 7.48 -52.48 -0.39 2.21 16 LS Contribution 291.84 15.07 4.40 4.40 Total: -1.00 -27.90 291.84 -8.66 -36.56 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -3.97 Total: 3.69 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: -2.28 Total: -33.85 kcal Atomic # 7 Polarization: -18.38 SS G_CDS: 0.59 Total: -17.79 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.21 Total: -6.95 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -2.16 Total: 1.96 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.90 -8.66 -36.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396305023.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.679 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds