Wall clock time and date at job start Mon Mar 30 2020 06:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.35904 * 119.71038 * 265.00218 * 3 2 1 5 5 C 1.38926 * 120.69540 * 179.97438 * 4 3 2 6 6 C 1.38113 * 120.17003 * 359.97438 * 5 4 3 7 7 O 1.35983 * 119.90135 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00070 * 0.02562 * 7 6 5 9 9 C 1.40035 * 120.19116 * 0.04412 * 6 5 4 10 10 S 1.75985 * 130.26116 * 179.97438 * 9 6 5 11 11 C 1.75464 * 91.77533 * 180.02562 * 10 9 6 12 12 C 1.39953 * 124.83659 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99658 * 180.02562 * 12 11 10 14 14 C 1.40168 * 120.00258 * 0.02792 * 12 11 10 15 15 N 1.30764 * 119.99824 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99799 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47349 * 60.00555 * 16 14 12 18 18 H 1.48509 * 109.46807 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47281 * 299.99868 * 16 14 12 20 20 C 1.36944 * 110.31934 * 359.97438 * 11 10 9 21 21 C 1.39804 * 115.02711 * 359.71529 * 20 11 10 22 22 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 27 27 H 1.07998 * 119.65657 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.91327 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.46772 * 299.99221 * 8 7 6 30 30 H 1.08991 * 109.47373 * 59.99535 * 8 7 6 31 31 H 1.08997 * 109.47198 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99887 * 179.97438 * 15 14 12 33 33 H 1.08004 * 122.49120 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3537 2.0216 -1.1759 5 6 2.8182 3.3308 -1.1997 6 6 2.9582 4.0391 -0.0224 7 8 3.4128 5.3204 -0.0521 8 6 3.7250 5.8684 -1.3344 9 6 2.6339 3.4416 1.2018 10 16 2.7095 4.0863 2.8376 11 6 2.1164 2.5811 3.5168 12 6 1.9080 2.3468 4.8807 13 1 1.5397 1.3877 5.2137 14 6 2.1773 3.3568 5.8146 15 7 2.6237 4.5179 5.4114 16 14 1.8985 3.0440 7.6350 17 1 2.7484 1.9098 8.0783 18 1 2.2553 4.2617 8.4067 19 1 0.4698 2.7125 7.8672 20 6 1.8864 1.6685 2.5220 21 6 2.1590 2.1226 1.2282 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.2471 1.4757 -2.1016 28 1 3.0695 3.7960 -2.1414 29 1 4.5050 5.2700 -1.8051 30 1 2.8327 5.8596 -1.9603 31 1 4.0759 6.8935 -1.2157 32 1 2.8097 5.2169 6.0577 33 1 1.5176 0.6732 2.7217 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396305023.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:56 Heat of formation + Delta-G solvation = -48.164725 kcal Electronic energy + Delta-G solvation = -17037.838964 eV Core-core repulsion = 14346.015350 eV Total energy + Delta-G solvation = -2691.823614 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.81068 -38.93762 -36.64478 -34.89127 -34.04953 -30.95969 -29.78511 -28.06040 -26.89774 -24.37833 -23.92770 -21.84928 -20.88749 -19.72027 -18.36882 -17.50997 -16.85397 -16.52503 -16.44521 -15.65057 -15.27562 -15.08173 -14.57818 -14.28956 -13.96396 -13.64254 -13.55653 -13.23295 -13.09609 -12.88910 -12.76122 -12.54710 -12.28943 -12.01142 -11.87171 -11.54722 -11.54509 -11.52086 -10.97680 -10.82617 -9.64310 -9.15002 -8.89120 -8.00083 -6.55659 0.35059 0.77523 1.35078 1.35308 1.46891 1.52036 1.88465 1.96778 2.15789 2.58928 2.86570 3.27902 4.11161 4.23094 4.33472 4.40066 4.42887 4.50106 4.65140 4.71197 4.74190 4.89361 4.91212 4.97413 5.06997 5.17763 5.39520 5.42713 5.49108 5.58140 5.61457 5.82938 6.00701 6.07026 6.22247 6.53646 6.56807 6.73084 7.96808 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.007356 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.714807 B = 3805.346284 C = 5097.406181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C -0.159 4.159 4 C -0.072 4.072 5 C -0.277 4.277 6 C 0.167 3.833 7 O -0.347 6.347 8 C 0.023 3.977 9 C -0.326 4.326 10 S 0.123 5.877 11 C 0.024 3.976 12 C -0.412 4.412 13 H 0.104 0.896 14 C 0.015 3.985 15 N -0.800 5.800 16 Si 1.014 2.986 17 H -0.254 1.254 18 H -0.260 1.260 19 H -0.254 1.254 20 C -0.381 4.381 21 C 0.030 3.970 22 H 0.030 0.970 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.311 0.689 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 -0.822 -6.119 6.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.101 4.101 3 C -0.161 4.161 4 C -0.092 4.092 5 C -0.298 4.298 6 C 0.119 3.881 7 O -0.261 6.261 8 C -0.071 4.071 9 C -0.441 4.441 10 S 0.382 5.618 11 C -0.096 4.096 12 C -0.445 4.445 13 H 0.122 0.878 14 C -0.204 4.204 15 N -0.426 5.426 16 Si 0.832 3.168 17 H -0.177 1.177 18 H -0.184 1.184 19 H -0.178 1.178 20 C -0.405 4.405 21 C 0.022 3.978 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.324 0.910 -5.291 5.379 hybrid contribution -0.418 -1.221 -0.065 1.292 sum -0.095 -0.311 -5.357 5.367 Atomic orbital electron populations 1.21662 0.94910 1.01744 1.01051 1.20286 0.96157 0.91834 1.01866 1.19660 1.07422 0.97605 0.91376 1.20343 0.97533 0.94127 0.97180 1.20882 1.15516 0.97505 0.95874 1.18352 0.94102 0.83306 0.92386 1.86038 1.80112 1.25842 1.34100 1.23255 1.00947 0.99882 0.83044 1.23133 1.20191 1.00927 0.99828 1.84700 1.70589 1.15207 0.91279 1.21904 0.95130 0.95019 0.97527 1.19664 1.34286 1.00977 0.89598 0.87802 1.27347 0.91587 0.93106 1.08374 1.68722 1.29032 1.04543 1.40281 0.84727 0.80385 0.79570 0.72147 1.17743 1.18359 1.17766 1.19671 1.28772 1.01488 0.90587 1.17961 0.94634 0.91157 0.94052 0.95083 0.92463 0.90873 0.93112 0.89777 0.83915 0.83739 0.91886 0.91895 0.86611 0.87504 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 9.89 71.98 0.71 -3.55 16 2 C -0.06 -2.20 5.78 29.85 0.17 -2.03 16 3 C -0.16 -6.70 5.18 -19.47 -0.10 -6.80 16 4 C -0.07 -2.67 9.54 21.89 0.21 -2.46 16 5 C -0.28 -10.58 9.04 22.41 0.20 -10.37 16 6 C 0.17 7.62 6.71 22.68 0.15 7.77 16 7 O -0.35 -14.40 10.47 -93.35 -0.98 -15.38 16 8 C 0.02 0.62 9.81 113.37 1.11 1.73 16 9 C -0.33 -17.10 6.42 23.18 0.15 -16.95 16 10 S 0.12 6.68 20.10 -56.49 -1.14 5.54 16 11 C 0.02 1.32 6.11 22.38 0.14 1.46 16 12 C -0.41 -21.35 9.27 23.15 0.21 -21.14 16 13 H 0.10 5.04 7.85 -2.91 -0.02 5.02 16 14 C 0.01 0.69 5.50 85.32 0.47 1.16 16 15 N -0.80 -39.15 10.59 21.87 0.23 -38.92 16 16 Si 1.01 34.69 29.56 68.60 2.03 36.72 16 17 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 18 H -0.26 -8.27 7.11 99.48 0.71 -7.56 16 19 H -0.25 -8.41 7.11 99.48 0.71 -7.70 16 20 C -0.38 -20.40 9.57 22.34 0.21 -20.18 16 21 C 0.03 1.54 5.82 -21.48 -0.13 1.42 16 22 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.05 1.86 7.37 -2.39 -0.02 1.84 16 26 H 0.08 2.36 8.02 -2.39 -0.02 2.34 16 27 H 0.14 4.10 8.03 -2.91 -0.02 4.07 16 28 H 0.15 4.36 6.25 -2.91 -0.02 4.34 16 29 H 0.06 1.52 7.65 -2.38 -0.02 1.50 16 30 H 0.06 1.52 7.65 -2.39 -0.02 1.50 16 31 H 0.12 2.47 8.14 -2.39 -0.02 2.46 16 32 H 0.31 13.49 8.29 -92.71 -0.77 12.72 16 33 H 0.11 5.51 7.48 -2.91 -0.02 5.48 16 Total: -1.00 -63.87 291.84 4.78 -59.09 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 1.11 Total: 22.89 kcal Atomic # 6 Polarization: -73.47 SS G_CDS: 3.52 Total: -69.95 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.23 Total: -38.92 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.98 Total: -15.38 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -1.14 Total: 5.54 kcal Total: -63.87 4.78 -59.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396305023.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.927 kcal (2) G-P(sol) polarization free energy of solvation -63.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds