Wall clock time and date at job start Mon Mar 30 2020 06:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46890 * 2 1 4 4 S 1.69967 * 124.02286 * 275.28866 * 3 2 1 5 5 C 1.75798 * 93.23457 * 180.22714 * 4 3 2 6 6 C 1.39764 * 130.14192 * 179.75792 * 5 4 3 7 7 C 1.38113 * 120.32613 * 180.02562 * 6 5 4 8 8 O 1.35904 * 119.96862 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99822 * 180.02562 * 8 7 6 10 10 C 1.39139 * 120.06617 * 0.02562 * 7 6 5 11 11 C 1.37313 * 120.21395 * 359.97438 * 10 7 6 12 12 C 1.39367 * 110.18618 * 359.80192 * 5 4 3 13 13 C 1.36450 * 124.01666 * 95.14766 * 3 2 1 14 14 C 1.40798 * 123.29892 * 359.97438 * 13 3 2 15 15 H 1.08000 * 120.00055 * 321.33000 * 14 13 3 16 16 C 1.39692 * 120.00434 * 141.32929 * 14 13 3 17 17 N 1.31087 * 119.99915 * 340.46245 * 16 14 13 18 18 Si 1.86803 * 120.00419 * 160.73326 * 16 14 13 19 19 H 1.48495 * 109.46826 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46690 * 120.00053 * 18 16 14 21 21 H 1.48499 * 109.47339 * 240.00107 * 18 16 14 22 22 H 1.09005 * 109.46767 * 60.00208 * 1 2 3 23 23 H 1.09007 * 109.46605 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47617 * 299.99997 * 1 2 3 25 25 H 1.09002 * 109.47476 * 240.00163 * 2 1 3 26 26 H 1.08999 * 109.47618 * 119.99904 * 2 1 3 27 27 H 1.08006 * 119.83891 * 0.02562 * 6 5 4 28 28 H 1.09002 * 109.47019 * 300.00008 * 9 8 7 29 29 H 1.09000 * 109.47353 * 60.00224 * 9 8 7 30 30 H 1.09000 * 109.46936 * 180.02562 * 9 8 7 31 31 H 1.07997 * 119.89676 * 179.97438 * 10 7 6 32 32 H 1.08002 * 119.80646 * 180.02562 * 11 10 7 33 33 H 0.96999 * 120.00070 * 185.29264 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.2268 2.3608 -1.4027 5 6 2.8149 3.7547 -0.5073 6 6 3.2228 5.0115 -0.9628 7 6 3.6551 5.9709 -0.0682 8 8 4.0506 7.1904 -0.5190 9 6 4.4863 8.1344 0.4613 10 6 3.6871 5.6897 1.2941 11 6 3.2891 4.4590 1.7552 12 6 2.8463 3.4716 0.8569 13 6 2.3824 2.1068 1.1264 14 6 2.3108 1.5561 2.4203 15 1 1.4861 0.9124 2.6884 16 6 3.3064 1.8424 3.3574 17 7 4.4743 2.2843 2.9585 18 14 2.9763 1.5882 5.1783 19 1 1.5939 1.0790 5.3643 20 1 3.9440 0.6027 5.7239 21 1 3.1289 2.8803 5.8942 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.1999 5.2336 -2.0195 28 1 3.6752 8.3304 1.1627 29 1 5.3429 7.7295 1.0002 30 1 4.7727 9.0637 -0.0313 31 1 4.0260 6.4417 1.9912 32 1 3.3162 4.2480 2.8141 33 1 5.1904 2.4101 3.6006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396305048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:58 Heat of formation + Delta-G solvation = -16.222385 kcal Electronic energy + Delta-G solvation = -17243.029429 eV Core-core repulsion = 14552.590938 eV Total energy + Delta-G solvation = -2690.438491 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40232 -37.39985 -34.80319 -33.06174 -31.19300 -30.12375 -27.96230 -26.53806 -25.77301 -22.81392 -21.80735 -20.61141 -19.26598 -17.73191 -16.59610 -15.55311 -15.34930 -15.30608 -14.92198 -14.60215 -13.57678 -13.22949 -12.96667 -12.67418 -12.63304 -12.38129 -11.95230 -11.59661 -11.56770 -11.35793 -11.21126 -10.90738 -10.69856 -10.64488 -10.36780 -9.96023 -9.66108 -9.42686 -9.29086 -8.94376 -8.28240 -7.04641 -6.79848 -6.38179 -4.34132 1.99477 2.13340 2.77832 2.91990 3.06686 3.12111 3.62288 3.70779 3.83468 3.97677 4.60101 5.17064 5.29775 5.39237 5.56636 5.66524 5.72618 5.95103 6.03852 6.13928 6.26267 6.32321 6.42729 6.61707 6.72443 6.87480 6.97678 7.08337 7.14619 7.20178 7.32631 7.35155 7.54989 8.01109 8.04561 8.37432 8.71351 8.88911 10.23275 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.009447 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.369661 B = 2963.136948 C = 4559.388693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.010 4.010 3 C -0.375 4.375 4 S 0.048 5.952 5 C -0.105 4.105 6 C -0.142 4.142 7 C 0.118 3.882 8 O -0.325 6.325 9 C 0.033 3.967 10 C -0.232 4.232 11 C 0.005 3.995 12 C -0.069 4.069 13 C 0.130 3.870 14 C -0.458 4.458 15 H 0.083 0.917 16 C 0.080 3.920 17 N -0.802 5.802 18 Si 0.898 3.102 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.273 1.273 22 H 0.043 0.957 23 H 0.038 0.962 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 5.145 -1.305 5.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.050 4.050 3 C -0.490 4.490 4 S 0.311 5.689 5 C -0.221 4.221 6 C -0.166 4.166 7 C 0.072 3.928 8 O -0.239 6.239 9 C -0.063 4.063 10 C -0.253 4.253 11 C -0.015 4.015 12 C -0.078 4.078 13 C 0.121 3.879 14 C -0.491 4.491 15 H 0.101 0.899 16 C -0.136 4.136 17 N -0.428 5.428 18 Si 0.722 3.278 19 H -0.184 1.184 20 H -0.201 1.201 21 H -0.198 1.198 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.135 0.865 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.043 4.935 -2.900 5.819 hybrid contribution 0.432 0.255 2.765 2.811 sum -0.611 5.191 -0.135 5.228 Atomic orbital electron populations 1.21787 0.97396 0.99371 1.01389 1.19398 0.93477 0.91672 1.00428 1.22707 1.30989 1.00982 0.94366 1.81693 1.71372 1.04439 1.11422 1.22307 1.04698 0.97450 0.97627 1.19285 1.08040 0.91134 0.98165 1.18508 0.97517 0.84548 0.92258 1.85969 1.80324 1.21868 1.35780 1.22905 0.99101 0.91548 0.92734 1.20890 1.11288 0.99364 0.93786 1.20811 0.91096 0.89784 0.99788 1.19455 1.02008 0.95428 0.90901 1.17198 0.89640 0.87905 0.93127 1.18865 1.08471 1.27474 0.94292 0.89898 1.25802 0.94532 0.92645 1.00660 1.69968 1.01530 1.34802 1.36549 0.86428 0.79874 0.78798 0.82669 1.18410 1.20070 1.19808 0.93737 0.94317 0.92881 0.94102 0.91270 0.86472 0.93101 0.93018 0.89076 0.86583 0.85730 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.89 37.16 0.37 -2.23 16 2 C -0.01 -0.21 6.08 -27.88 -0.17 -0.38 16 3 C -0.37 -8.97 5.56 -34.95 -0.19 -9.16 16 4 S 0.05 1.05 22.89 -107.50 -2.46 -1.41 16 5 C -0.11 -2.47 6.44 -38.59 -0.25 -2.71 16 6 C -0.14 -3.01 10.00 -39.06 -0.39 -3.40 16 7 C 0.12 2.37 6.68 -39.29 -0.26 2.11 16 8 O -0.33 -5.68 10.49 -19.44 -0.20 -5.89 16 9 C 0.03 0.41 9.81 101.05 0.99 1.41 16 10 C -0.23 -4.68 9.00 -39.58 -0.36 -5.04 16 11 C 0.00 0.11 8.46 -39.01 -0.33 -0.22 16 12 C -0.07 -1.72 5.56 -105.17 -0.58 -2.31 16 13 C 0.13 3.37 5.38 -106.18 -0.57 2.80 16 14 C -0.46 -11.73 8.08 -38.07 -0.31 -12.04 16 15 H 0.08 2.09 7.80 -52.49 -0.41 1.68 16 16 C 0.08 1.96 4.12 -17.33 -0.07 1.89 16 17 N -0.80 -20.23 10.80 55.54 0.60 -19.63 16 18 Si 0.90 18.30 29.60 -169.99 -5.03 13.27 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.51 7.35 -51.93 -0.38 1.13 16 27 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 28 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 29 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.12 1.98 6.29 -52.49 -0.33 1.65 16 32 H 0.12 2.93 6.07 -52.49 -0.32 2.61 16 33 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 LS Contribution 290.05 15.07 4.37 4.37 Total: -1.00 -27.50 290.05 -8.76 -36.26 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.91 Total: 2.30 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: -2.13 Total: -29.28 kcal Atomic # 7 Polarization: -20.23 SS G_CDS: 0.60 Total: -19.63 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.20 Total: -5.89 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.46 Total: -1.41 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.50 -8.76 -36.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396305048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.040 kcal (2) G-P(sol) polarization free energy of solvation -27.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds