Wall clock time and date at job start Mon Mar 30 2020 06:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46890 * 2 1 4 4 S 1.69967 * 124.02286 * 275.28866 * 3 2 1 5 5 C 1.75798 * 93.23457 * 180.22714 * 4 3 2 6 6 C 1.39764 * 130.14192 * 179.75792 * 5 4 3 7 7 C 1.38113 * 120.32613 * 180.02562 * 6 5 4 8 8 O 1.35904 * 119.96862 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99822 * 180.02562 * 8 7 6 10 10 C 1.39139 * 120.06617 * 0.02562 * 7 6 5 11 11 C 1.37313 * 120.21395 * 359.97438 * 10 7 6 12 12 C 1.39367 * 110.18618 * 359.80192 * 5 4 3 13 13 C 1.36450 * 124.01666 * 95.14766 * 3 2 1 14 14 C 1.40798 * 123.29892 * 359.97438 * 13 3 2 15 15 H 1.08000 * 120.00055 * 321.33000 * 14 13 3 16 16 C 1.39692 * 120.00434 * 141.32929 * 14 13 3 17 17 N 1.31087 * 119.99915 * 340.46245 * 16 14 13 18 18 Si 1.86803 * 120.00419 * 160.73326 * 16 14 13 19 19 H 1.48495 * 109.46826 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46690 * 120.00053 * 18 16 14 21 21 H 1.48499 * 109.47339 * 240.00107 * 18 16 14 22 22 H 1.09005 * 109.46767 * 60.00208 * 1 2 3 23 23 H 1.09007 * 109.46605 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47617 * 299.99997 * 1 2 3 25 25 H 1.09002 * 109.47476 * 240.00163 * 2 1 3 26 26 H 1.08999 * 109.47618 * 119.99904 * 2 1 3 27 27 H 1.08006 * 119.83891 * 0.02562 * 6 5 4 28 28 H 1.09002 * 109.47019 * 300.00008 * 9 8 7 29 29 H 1.09000 * 109.47353 * 60.00224 * 9 8 7 30 30 H 1.09000 * 109.46936 * 180.02562 * 9 8 7 31 31 H 1.07997 * 119.89676 * 179.97438 * 10 7 6 32 32 H 1.08002 * 119.80646 * 180.02562 * 11 10 7 33 33 H 0.96999 * 120.00070 * 185.29264 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.2268 2.3608 -1.4027 5 6 2.8149 3.7547 -0.5073 6 6 3.2228 5.0115 -0.9628 7 6 3.6551 5.9709 -0.0682 8 8 4.0506 7.1904 -0.5190 9 6 4.4863 8.1344 0.4613 10 6 3.6871 5.6897 1.2941 11 6 3.2891 4.4590 1.7552 12 6 2.8463 3.4716 0.8569 13 6 2.3824 2.1068 1.1264 14 6 2.3108 1.5561 2.4203 15 1 1.4861 0.9124 2.6884 16 6 3.3064 1.8424 3.3574 17 7 4.4743 2.2843 2.9585 18 14 2.9763 1.5882 5.1783 19 1 1.5939 1.0790 5.3643 20 1 3.9440 0.6027 5.7239 21 1 3.1289 2.8803 5.8942 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.1999 5.2336 -2.0195 28 1 3.6752 8.3304 1.1627 29 1 5.3429 7.7295 1.0002 30 1 4.7727 9.0637 -0.0313 31 1 4.0260 6.4417 1.9912 32 1 3.3162 4.2480 2.8141 33 1 5.1904 2.4101 3.6006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396305048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:58 Heat of formation + Delta-G solvation = -29.793355 kcal Electronic energy + Delta-G solvation = -17243.617910 eV Core-core repulsion = 14552.590938 eV Total energy + Delta-G solvation = -2691.026972 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93191 -38.99383 -36.47825 -34.84697 -32.84454 -31.75956 -29.54363 -27.85199 -27.53169 -24.44482 -23.46368 -22.28443 -21.03333 -19.25543 -18.38820 -17.17966 -16.92481 -16.62043 -16.55494 -16.24185 -15.17763 -14.83050 -14.63681 -14.30665 -14.22074 -13.94430 -13.42740 -13.29078 -13.13333 -12.95214 -12.71783 -12.47171 -12.23423 -12.18215 -11.98423 -11.60659 -11.39157 -11.13870 -11.01269 -10.70542 -10.00667 -8.74868 -8.61019 -8.14258 -6.22507 0.27232 0.43117 1.07125 1.28416 1.39180 1.51793 1.86292 1.91757 2.26178 2.50579 2.84425 3.33098 3.95858 4.10960 4.32668 4.37601 4.43641 4.45849 4.57963 4.65481 4.72874 4.74352 4.76031 5.04372 5.09189 5.24353 5.28787 5.39456 5.45693 5.51957 5.60049 5.66260 5.85977 6.18146 6.45164 6.56349 6.86147 7.02083 8.44104 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.009447 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.369661 B = 2963.136948 C = 4559.388693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.012 4.012 3 C -0.390 4.390 4 S 0.078 5.922 5 C -0.126 4.126 6 C -0.152 4.152 7 C 0.129 3.871 8 O -0.330 6.330 9 C 0.020 3.980 10 C -0.223 4.223 11 C -0.013 4.013 12 C -0.103 4.103 13 C 0.096 3.904 14 C -0.486 4.486 15 H 0.074 0.926 16 C 0.048 3.952 17 N -0.831 5.831 18 Si 0.964 3.036 19 H -0.262 1.262 20 H -0.270 1.270 21 H -0.264 1.264 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.135 0.865 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.126 0.874 31 H 0.149 0.851 32 H 0.114 0.886 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 6.432 -1.287 6.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.052 4.052 3 C -0.506 4.506 4 S 0.341 5.659 5 C -0.242 4.242 6 C -0.177 4.177 7 C 0.082 3.918 8 O -0.244 6.244 9 C -0.075 4.075 10 C -0.244 4.244 11 C -0.033 4.033 12 C -0.112 4.112 13 C 0.087 3.913 14 C -0.519 4.519 15 H 0.092 0.908 16 C -0.166 4.166 17 N -0.459 5.459 18 Si 0.786 3.214 19 H -0.186 1.186 20 H -0.195 1.195 21 H -0.188 1.188 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.153 0.847 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.167 0.833 32 H 0.131 0.869 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.913 6.237 -2.893 6.936 hybrid contribution 0.443 -0.020 2.664 2.701 sum -0.471 6.217 -0.229 6.239 Atomic orbital electron populations 1.21672 0.95195 1.01187 1.00850 1.19471 0.95362 0.90151 1.00198 1.23253 1.29866 1.02357 0.95090 1.81337 1.71123 1.03499 1.09972 1.22586 1.05426 0.98725 0.97428 1.19547 1.07969 0.90730 0.99433 1.18554 0.95998 0.85438 0.91857 1.85983 1.79837 1.21118 1.37490 1.23326 0.99649 0.91630 0.92856 1.21174 1.09716 0.98835 0.94685 1.20833 0.92409 0.90861 0.99174 1.19657 1.03779 0.95689 0.92117 1.17596 0.90876 0.88931 0.93900 1.18979 1.08989 1.28623 0.95355 0.90786 1.26447 0.93849 0.92018 1.04327 1.70021 1.02241 1.35641 1.37981 0.85435 0.79461 0.79006 0.77528 1.18570 1.19516 1.18828 0.93180 0.91315 0.94421 0.92841 0.92870 0.84670 0.91981 0.92394 0.85577 0.83348 0.86853 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.89 71.98 0.71 -4.02 16 2 C -0.01 -0.52 6.08 29.85 0.18 -0.34 16 3 C -0.39 -19.03 5.56 25.27 0.14 -18.89 16 4 S 0.08 3.41 22.89 -56.49 -1.29 2.12 16 5 C -0.13 -5.94 6.44 22.91 0.15 -5.79 16 6 C -0.15 -6.32 10.00 22.61 0.23 -6.10 16 7 C 0.13 4.96 6.68 22.46 0.15 5.11 16 8 O -0.33 -10.58 10.49 -92.47 -0.97 -11.55 16 9 C 0.02 0.43 9.81 113.37 1.11 1.54 16 10 C -0.22 -8.71 9.00 22.27 0.20 -8.51 16 11 C -0.01 -0.61 8.46 22.64 0.19 -0.42 16 12 C -0.10 -5.30 5.56 -20.22 -0.11 -5.41 16 13 C 0.10 5.14 5.38 -20.87 -0.11 5.03 16 14 C -0.49 -25.82 8.08 23.25 0.19 -25.64 16 15 H 0.07 3.90 7.80 -2.91 -0.02 3.87 16 16 C 0.05 2.37 4.12 85.16 0.35 2.72 16 17 N -0.83 -42.81 10.80 21.79 0.24 -42.58 16 18 Si 0.96 38.04 29.60 68.60 2.03 40.08 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 20 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 2.39 7.35 -2.39 -0.02 2.37 16 27 H 0.14 4.99 8.06 -2.91 -0.02 4.96 16 28 H 0.06 1.23 7.66 -2.39 -0.02 1.21 16 29 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 30 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.15 4.68 6.29 -2.91 -0.02 4.66 16 32 H 0.11 5.46 6.07 -2.91 -0.02 5.44 16 33 H 0.28 13.36 8.31 -92.71 -0.77 12.59 16 Total: -1.00 -60.21 290.05 4.50 -55.71 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 1.12 Total: 16.93 kcal Atomic # 6 Polarization: -64.09 SS G_CDS: 3.38 Total: -60.72 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.24 Total: -42.58 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.97 Total: -11.55 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.08 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.29 Total: 2.12 kcal Total: -60.21 4.50 -55.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396305048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.920 kcal (2) G-P(sol) polarization free energy of solvation -60.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds