Wall clock time and date at job start Mon Mar 30 2020 06:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46810 * 2 1 4 4 C 1.41267 * 119.80604 * 90.23895 * 3 2 1 5 5 C 1.40995 * 120.19886 * 359.97438 * 4 3 2 6 6 H 1.07996 * 120.00278 * 333.82067 * 5 4 3 7 7 C 1.39877 * 119.99757 * 153.54997 * 5 4 3 8 8 N 1.30890 * 120.00329 * 343.98094 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 163.98252 * 7 5 4 10 10 H 1.48501 * 109.47349 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47341 * 120.00122 * 9 7 5 12 12 H 1.48504 * 109.47086 * 239.99821 * 9 7 5 13 13 C 1.40354 * 119.59470 * 180.24707 * 4 3 2 14 14 C 1.38874 * 119.96870 * 359.44606 * 13 4 3 15 15 S 1.76059 * 130.46074 * 180.20722 * 14 13 4 16 16 C 1.75474 * 91.54853 * 180.32097 * 15 14 13 17 17 C 1.32532 * 110.84011 * 0.02562 * 16 15 14 18 18 C 1.40342 * 120.16708 * 0.55506 * 14 13 4 19 19 C 1.35194 * 119.80424 * 270.20841 * 3 2 1 20 20 C 1.50706 * 119.56340 * 0.02562 * 19 3 2 21 21 O 1.42899 * 109.46881 * 273.80834 * 20 19 3 22 22 H 1.08996 * 109.47064 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47344 * 300.00495 * 1 2 3 24 24 H 1.09005 * 109.46770 * 60.00406 * 1 2 3 25 25 H 1.08995 * 109.47344 * 239.99505 * 2 1 3 26 26 H 1.09005 * 109.46770 * 119.99593 * 2 1 3 27 27 H 0.96990 * 120.00260 * 179.97438 * 8 7 5 28 28 H 1.08001 * 120.01433 * 179.70355 * 13 4 3 29 29 H 1.08004 * 124.58216 * 180.02562 * 16 15 14 30 30 H 1.07994 * 122.06083 * 180.02562 * 17 16 15 31 31 H 1.09001 * 109.47007 * 33.81310 * 20 19 3 32 32 H 1.08999 * 109.46878 * 153.80936 * 20 19 3 33 33 H 0.96705 * 113.99620 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2711 2.0812 1.2258 5 6 2.0405 1.4151 2.4469 6 1 1.3191 0.6129 2.4966 7 6 2.7502 1.7895 3.5926 8 7 3.8306 2.5202 3.4837 9 14 2.1560 1.2465 5.2784 10 1 0.9208 0.4355 5.1304 11 1 3.2087 0.4307 5.9352 12 1 1.8658 2.4424 6.1097 13 6 2.7339 3.4062 1.2206 14 6 2.9650 4.0556 0.0150 15 16 3.5410 5.6869 -0.3119 16 6 3.4414 5.4260 -2.0443 17 6 3.0069 4.2031 -2.3127 18 6 2.7259 3.3942 -1.1995 19 6 2.2522 2.0558 -1.1731 20 6 1.9913 1.3336 -2.4699 21 8 3.1506 0.5842 -2.8393 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.3225 2.7801 4.2782 28 1 2.9142 3.9191 2.1538 29 1 3.6994 6.1625 -2.7909 30 1 2.8779 3.8499 -3.3251 31 1 1.1457 0.6571 -2.3452 32 1 1.7638 2.0594 -3.2506 33 1 3.0539 0.0923 -3.6663 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396305651.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:27 Heat of formation + Delta-G solvation = -28.711599 kcal Electronic energy + Delta-G solvation = -17480.969472 eV Core-core repulsion = 14789.989408 eV Total energy + Delta-G solvation = -2690.980064 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.92770 -36.13740 -35.41511 -33.68754 -31.79034 -30.04633 -28.36330 -25.62341 -24.78100 -22.93419 -21.66717 -20.26468 -18.58381 -17.21127 -16.96487 -16.48309 -15.47920 -15.02503 -14.19902 -13.77457 -13.57013 -13.13269 -13.12434 -12.63454 -12.29256 -12.15478 -12.03684 -11.55739 -11.43695 -11.40149 -11.13358 -10.84551 -10.55239 -10.32670 -10.10677 -9.79545 -9.74855 -9.52099 -9.32021 -9.06739 -8.37851 -7.26540 -6.93737 -6.62354 -4.46093 1.88466 2.66104 2.73844 2.89821 2.99424 3.03998 3.13015 3.53670 3.79716 4.39573 4.97477 5.46354 5.58443 5.68287 5.77066 5.84292 5.90427 5.99625 6.14381 6.19033 6.45347 6.47734 6.60573 6.81655 6.88171 6.91241 7.01599 7.06068 7.25064 7.32546 7.68835 7.75782 7.83658 7.98526 8.06994 8.37273 8.65405 8.72350 9.99033 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016852 B = 0.008968 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.101670 B = 3121.589602 C = 4468.970006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C -0.132 4.132 4 C 0.127 3.873 5 C -0.436 4.436 6 H 0.089 0.911 7 C 0.071 3.929 8 N -0.775 5.775 9 Si 0.910 3.090 10 H -0.258 1.258 11 H -0.272 1.272 12 H -0.270 1.270 13 C -0.155 4.155 14 C -0.073 4.073 15 S -0.004 6.004 16 C -0.265 4.265 17 C -0.072 4.072 18 C -0.190 4.190 19 C -0.032 4.032 20 C 0.119 3.881 21 O -0.562 6.562 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.285 0.715 28 H 0.123 0.877 29 H 0.143 0.857 30 H 0.116 0.884 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.729 -1.743 -5.489 6.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.134 4.134 4 C 0.121 3.879 5 C -0.465 4.465 6 H 0.107 0.893 7 C -0.149 4.149 8 N -0.399 5.399 9 Si 0.734 3.266 10 H -0.181 1.181 11 H -0.198 1.198 12 H -0.195 1.195 13 C -0.181 4.181 14 C -0.188 4.188 15 S 0.256 5.744 16 C -0.398 4.398 17 C -0.102 4.102 18 C -0.196 4.196 19 C -0.035 4.035 20 C 0.042 3.958 21 O -0.366 6.366 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.140 0.860 29 H 0.161 0.839 30 H 0.133 0.867 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.855 -0.109 -4.005 4.920 hybrid contribution -0.630 -1.390 -0.664 1.664 sum -3.485 -1.498 -4.669 6.016 Atomic orbital electron populations 1.21747 0.96546 1.00031 1.01704 1.20316 0.94502 0.94212 1.01819 1.19275 1.06370 0.95280 0.92431 1.17305 0.88691 0.90302 0.91584 1.19651 1.18947 1.15550 0.92318 0.89341 1.26023 0.93454 0.93628 1.01800 1.69858 1.11175 1.26648 1.32219 0.86211 0.80079 0.79491 0.80805 1.18118 1.19758 1.19506 1.20574 1.08857 0.94542 0.94117 1.22290 1.03893 0.95156 0.97481 1.83616 1.73983 1.15096 1.01719 1.24467 1.16325 1.01321 0.97717 1.19695 0.99305 0.93145 0.98094 1.17525 1.14856 0.95839 0.91343 1.18546 1.00665 0.91702 0.92550 1.21044 0.87268 0.92923 0.94552 1.86696 1.39141 1.66293 1.44451 0.93799 0.92291 0.93676 0.92543 0.90896 0.90416 0.85956 0.83909 0.86655 0.93231 0.94157 0.78992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.71 37.16 0.36 -2.02 16 2 C -0.07 -1.39 4.74 -27.88 -0.13 -1.52 16 3 C -0.13 -3.06 5.13 -104.56 -0.54 -3.59 16 4 C 0.13 3.24 5.55 -106.91 -0.59 2.65 16 5 C -0.44 -10.69 8.08 -37.92 -0.31 -11.00 16 6 H 0.09 2.04 6.58 -52.49 -0.35 1.69 16 7 C 0.07 1.69 5.15 -17.34 -0.09 1.60 16 8 N -0.78 -19.40 10.99 55.54 0.61 -18.79 16 9 Si 0.91 17.66 29.59 -169.99 -5.03 12.63 16 10 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 11 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 12 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 13 C -0.15 -4.05 8.70 -38.55 -0.34 -4.39 16 14 C -0.07 -1.82 6.46 -38.55 -0.25 -2.07 16 15 S 0.00 -0.09 23.29 -107.50 -2.50 -2.59 16 16 C -0.27 -5.22 11.09 28.82 0.32 -4.90 16 17 C -0.07 -1.49 9.55 -40.66 -0.39 -1.88 16 18 C -0.19 -4.48 5.85 -106.83 -0.62 -5.10 16 19 C -0.03 -0.72 5.53 -104.26 -0.58 -1.30 16 20 C 0.12 2.12 6.11 36.01 0.22 2.34 16 21 O -0.56 -9.78 13.36 -35.23 -0.47 -10.25 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 24 H 0.04 0.71 7.23 -51.93 -0.38 0.34 16 25 H 0.06 1.04 6.44 -51.93 -0.33 0.70 16 26 H 0.07 1.48 6.75 -51.93 -0.35 1.12 16 27 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 28 H 0.12 3.31 6.23 -52.49 -0.33 2.99 16 29 H 0.14 2.34 8.06 -52.48 -0.42 1.92 16 30 H 0.12 2.07 7.24 -52.49 -0.38 1.69 16 31 H 0.05 0.79 5.77 -51.93 -0.30 0.49 16 32 H 0.04 0.65 6.94 -51.93 -0.36 0.29 16 33 H 0.37 4.11 9.12 45.56 0.42 4.53 16 LS Contribution 284.87 15.07 4.29 4.29 Total: -1.00 -28.53 284.87 -8.78 -37.31 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -2.75 Total: 8.58 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -2.93 Total: -31.18 kcal Atomic # 7 Polarization: -19.40 SS G_CDS: 0.61 Total: -18.79 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.47 Total: -10.25 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.50 Total: -2.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.53 -8.78 -37.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396305651.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.598 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds