Wall clock time and date at job start Mon Mar 30 2020 06:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46810 * 2 1 4 4 C 1.41267 * 119.80604 * 90.23895 * 3 2 1 5 5 C 1.40995 * 120.19886 * 359.97438 * 4 3 2 6 6 H 1.07996 * 120.00278 * 333.82067 * 5 4 3 7 7 C 1.39877 * 119.99757 * 153.54997 * 5 4 3 8 8 N 1.30890 * 120.00329 * 343.98094 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 163.98252 * 7 5 4 10 10 H 1.48501 * 109.47349 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47341 * 120.00122 * 9 7 5 12 12 H 1.48504 * 109.47086 * 239.99821 * 9 7 5 13 13 C 1.40354 * 119.59470 * 180.24707 * 4 3 2 14 14 C 1.38874 * 119.96870 * 359.44606 * 13 4 3 15 15 S 1.76059 * 130.46074 * 180.20722 * 14 13 4 16 16 C 1.75474 * 91.54853 * 180.32097 * 15 14 13 17 17 C 1.32532 * 110.84011 * 0.02562 * 16 15 14 18 18 C 1.40342 * 120.16708 * 0.55506 * 14 13 4 19 19 C 1.35194 * 119.80424 * 270.20841 * 3 2 1 20 20 C 1.50706 * 119.56340 * 0.02562 * 19 3 2 21 21 O 1.42899 * 109.46881 * 273.80834 * 20 19 3 22 22 H 1.08996 * 109.47064 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47344 * 300.00495 * 1 2 3 24 24 H 1.09005 * 109.46770 * 60.00406 * 1 2 3 25 25 H 1.08995 * 109.47344 * 239.99505 * 2 1 3 26 26 H 1.09005 * 109.46770 * 119.99593 * 2 1 3 27 27 H 0.96990 * 120.00260 * 179.97438 * 8 7 5 28 28 H 1.08001 * 120.01433 * 179.70355 * 13 4 3 29 29 H 1.08004 * 124.58216 * 180.02562 * 16 15 14 30 30 H 1.07994 * 122.06083 * 180.02562 * 17 16 15 31 31 H 1.09001 * 109.47007 * 33.81310 * 20 19 3 32 32 H 1.08999 * 109.46878 * 153.80936 * 20 19 3 33 33 H 0.96705 * 113.99620 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2711 2.0812 1.2258 5 6 2.0405 1.4151 2.4469 6 1 1.3191 0.6129 2.4966 7 6 2.7502 1.7895 3.5926 8 7 3.8306 2.5202 3.4837 9 14 2.1560 1.2465 5.2784 10 1 0.9208 0.4355 5.1304 11 1 3.2087 0.4307 5.9352 12 1 1.8658 2.4424 6.1097 13 6 2.7339 3.4062 1.2206 14 6 2.9650 4.0556 0.0150 15 16 3.5410 5.6869 -0.3119 16 6 3.4414 5.4260 -2.0443 17 6 3.0069 4.2031 -2.3127 18 6 2.7259 3.3942 -1.1995 19 6 2.2522 2.0558 -1.1731 20 6 1.9913 1.3336 -2.4699 21 8 3.1506 0.5842 -2.8393 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.3225 2.7801 4.2782 28 1 2.9142 3.9191 2.1538 29 1 3.6994 6.1625 -2.7909 30 1 2.8779 3.8499 -3.3251 31 1 1.1457 0.6571 -2.3452 32 1 1.7638 2.0594 -3.2506 33 1 3.0539 0.0923 -3.6663 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396305651.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:26 Heat of formation + Delta-G solvation = -45.979905 kcal Electronic energy + Delta-G solvation = -17481.718282 eV Core-core repulsion = 14789.989408 eV Total energy + Delta-G solvation = -2691.728873 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60057 -37.53928 -37.09898 -35.35687 -33.44394 -31.66782 -30.05625 -27.28487 -26.38983 -24.55518 -23.26179 -21.99977 -20.23546 -18.96821 -18.27923 -18.17607 -17.08500 -16.71445 -15.84153 -15.36046 -15.05687 -14.72342 -14.58633 -14.27645 -13.88925 -13.73804 -13.65546 -13.12530 -13.05910 -12.94619 -12.74203 -12.44315 -12.09295 -11.83579 -11.73922 -11.45958 -11.38106 -11.09285 -10.89210 -10.71435 -10.12213 -9.06005 -8.70252 -8.35596 -6.32189 0.19750 0.87034 1.01331 1.32183 1.38123 1.43458 1.53032 1.84459 2.16643 2.66297 3.43781 3.89346 4.09947 4.30068 4.36532 4.37392 4.47943 4.58166 4.60892 4.75096 4.93739 4.97932 5.08191 5.15387 5.23103 5.24786 5.41559 5.46173 5.54980 5.60826 5.89597 5.98753 6.12204 6.19652 6.55105 6.83088 6.92001 7.05043 8.25357 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016852 B = 0.008968 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.101670 B = 3121.589602 C = 4468.970006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 C -0.146 4.146 4 C 0.098 3.902 5 C -0.462 4.462 6 H 0.095 0.905 7 C 0.029 3.971 8 N -0.818 5.818 9 Si 0.982 3.018 10 H -0.248 1.248 11 H -0.266 1.266 12 H -0.269 1.269 13 C -0.188 4.188 14 C -0.109 4.109 15 S -0.006 6.006 16 C -0.244 4.244 17 C -0.086 4.086 18 C -0.202 4.202 19 C -0.048 4.048 20 C 0.127 3.873 21 O -0.583 6.583 22 H 0.074 0.926 23 H 0.041 0.959 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.289 0.711 28 H 0.097 0.903 29 H 0.185 0.815 30 H 0.150 0.850 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 -2.464 -7.530 9.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 C -0.148 4.148 4 C 0.093 3.907 5 C -0.490 4.490 6 H 0.113 0.887 7 C -0.187 4.187 8 N -0.443 5.443 9 Si 0.802 3.198 10 H -0.171 1.171 11 H -0.191 1.191 12 H -0.194 1.194 13 C -0.214 4.214 14 C -0.223 4.223 15 S 0.254 5.746 16 C -0.377 4.377 17 C -0.116 4.116 18 C -0.208 4.208 19 C -0.050 4.050 20 C 0.050 3.950 21 O -0.391 6.391 22 H 0.092 0.908 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.202 0.798 30 H 0.167 0.833 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.708 -0.846 -6.074 7.167 hybrid contribution -0.301 -1.066 -0.212 1.128 sum -4.009 -1.912 -6.287 7.697 Atomic orbital electron populations 1.21674 0.94242 1.01909 1.01381 1.20309 0.96407 0.91911 1.01680 1.19710 1.06069 0.96973 0.92019 1.17703 0.89321 0.90466 0.93233 1.19892 1.19805 1.16353 0.92998 0.88685 1.26913 0.93056 0.93292 1.05414 1.69945 1.12585 1.28353 1.33374 0.85145 0.79797 0.79048 0.75765 1.17125 1.19126 1.19363 1.20477 1.11546 0.95493 0.93860 1.22650 1.04735 0.97050 0.97880 1.83563 1.73605 1.13422 1.03984 1.24987 1.14009 1.01831 0.96879 1.19948 0.99738 0.93073 0.98798 1.18096 1.14129 0.96785 0.91766 1.19109 0.99465 0.91802 0.94638 1.20960 0.87798 0.93633 0.92643 1.86611 1.39127 1.66765 1.46630 0.90759 0.94020 0.92594 0.91098 0.92439 0.90048 0.88471 0.79807 0.83251 0.91188 0.92080 0.75720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 9.71 71.98 0.70 -3.55 16 2 C -0.07 -2.51 4.74 29.85 0.14 -2.37 16 3 C -0.15 -6.83 5.13 -19.82 -0.10 -6.93 16 4 C 0.10 5.25 5.55 -21.34 -0.12 5.13 16 5 C -0.46 -23.65 8.08 23.34 0.19 -23.46 16 6 H 0.10 4.54 6.58 -2.91 -0.02 4.52 16 7 C 0.03 1.45 5.15 85.23 0.44 1.89 16 8 N -0.82 -43.28 10.99 21.82 0.24 -43.04 16 9 Si 0.98 37.22 29.59 68.60 2.03 39.25 16 10 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 11 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 12 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 13 C -0.19 -10.40 8.70 22.94 0.20 -10.20 16 14 C -0.11 -5.54 6.46 22.93 0.15 -5.39 16 15 S -0.01 -0.24 23.29 -56.49 -1.32 -1.55 16 16 C -0.24 -8.90 11.09 66.68 0.74 -8.16 16 17 C -0.09 -3.32 9.55 21.66 0.21 -3.12 16 18 C -0.20 -9.37 5.85 -21.30 -0.12 -9.49 16 19 C -0.05 -2.10 5.53 -19.63 -0.11 -2.21 16 20 C 0.13 4.11 6.11 71.24 0.43 4.54 16 21 O -0.58 -18.46 13.36 -148.98 -1.99 -20.45 16 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.04 1.44 7.87 -2.39 -0.02 1.42 16 24 H 0.06 1.62 7.23 -2.38 -0.02 1.61 16 25 H 0.07 2.46 6.44 -2.39 -0.02 2.45 16 26 H 0.06 2.34 6.75 -2.38 -0.02 2.32 16 27 H 0.29 13.87 8.30 -92.72 -0.77 13.10 16 28 H 0.10 5.71 6.23 -2.91 -0.02 5.69 16 29 H 0.18 5.14 8.06 -2.91 -0.02 5.11 16 30 H 0.15 4.70 7.24 -2.91 -0.02 4.68 16 31 H 0.07 1.97 5.77 -2.39 -0.01 1.95 16 32 H 0.06 1.72 6.94 -2.39 -0.02 1.70 16 33 H 0.39 7.33 9.12 -74.05 -0.68 6.65 16 Total: -1.00 -64.78 284.87 2.18 -62.59 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.48 Total: 26.52 kcal Atomic # 6 Polarization: -66.07 SS G_CDS: 2.74 Total: -63.33 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.24 Total: -43.04 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -1.99 Total: -20.45 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -1.32 Total: -1.55 kcal Total: -64.78 2.18 -62.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396305651.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.614 kcal (2) G-P(sol) polarization free energy of solvation -64.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds