Wall clock time and date at job start Mon Mar 30 2020 06:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47123 * 2 1 4 4 C 1.37928 * 120.05986 * 265.21792 * 3 2 1 5 5 C 1.37744 * 120.76699 * 180.24132 * 4 3 2 6 6 C 1.50699 * 119.55080 * 179.80131 * 5 4 3 7 7 O 1.42905 * 109.47194 * 359.97438 * 6 5 4 8 8 C 1.41398 * 120.90434 * 359.77169 * 5 4 3 9 9 C 1.45452 * 129.17086 * 179.97438 * 8 5 4 10 10 C 1.31866 * 114.88599 * 180.02562 * 9 8 5 11 11 S 1.75305 * 111.33049 * 0.02562 * 10 9 8 12 12 C 1.39390 * 118.98429 * 0.02562 * 8 5 4 13 13 C 1.40369 * 120.06006 * 84.99672 * 3 2 1 14 14 C 1.40929 * 120.11672 * 0.02804 * 13 3 2 15 15 H 1.07998 * 119.99971 * 323.04342 * 14 13 3 16 16 C 1.39930 * 120.00607 * 143.04542 * 14 13 3 17 17 N 1.30869 * 119.99911 * 332.16346 * 16 14 13 18 18 Si 1.86803 * 120.00104 * 152.15750 * 16 14 13 19 19 H 1.48502 * 109.47050 * 270.00393 * 18 16 14 20 20 H 1.48500 * 109.47124 * 30.00488 * 18 16 14 21 21 H 1.48491 * 109.46880 * 150.00327 * 18 16 14 22 22 H 1.08997 * 109.46936 * 299.99909 * 1 2 3 23 23 H 1.09000 * 109.47306 * 60.00077 * 1 2 3 24 24 H 1.08994 * 109.46911 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46936 * 240.00090 * 2 1 3 26 26 H 1.09000 * 109.47306 * 119.99923 * 2 1 3 27 27 H 1.08004 * 119.61611 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.47472 * 119.97623 * 6 5 4 29 29 H 1.08998 * 109.47061 * 239.97836 * 6 5 4 30 30 H 0.96694 * 114.00163 * 179.97438 * 7 6 5 31 31 H 1.08000 * 122.56029 * 0.04660 * 9 8 5 32 32 H 1.07996 * 124.33448 * 179.97438 * 10 9 8 33 33 H 0.97003 * 119.99808 * 357.65208 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3565 2.0390 -1.1896 5 6 2.8216 3.3355 -1.2061 6 6 3.1719 3.9827 -2.5212 7 8 2.9377 3.0575 -3.5848 8 6 2.9744 4.0676 -0.0061 9 6 3.4450 5.4305 0.1850 10 6 3.4765 5.8360 1.4394 11 16 2.9280 4.5779 2.5301 12 6 2.6469 3.4575 1.2036 13 6 2.1669 2.1191 1.2103 14 6 1.8333 1.4936 2.4283 15 1 0.9918 0.8183 2.4759 16 6 2.5921 1.7476 3.5762 17 7 3.8532 2.0798 3.4666 18 14 1.8052 1.6124 5.2650 19 1 1.2354 2.9280 5.6522 20 1 0.7231 0.5962 5.2270 21 1 2.8315 1.2058 6.2581 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2484 1.4989 -2.1186 28 1 2.5528 4.8680 -2.6668 29 1 4.2229 4.2713 -2.5156 30 1 3.1418 3.4076 -4.4628 31 1 3.7454 6.0624 -0.6377 32 1 3.7995 6.8171 1.7545 33 1 4.2707 2.1169 2.5918 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396306349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:02 Heat of formation + Delta-G solvation = -53.410229 kcal Electronic energy + Delta-G solvation = -17537.143551 eV Core-core repulsion = 14845.092474 eV Total energy + Delta-G solvation = -2692.051077 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.32641 -37.70748 -36.89608 -35.48956 -33.45250 -31.61109 -29.27321 -28.29163 -25.33430 -24.77352 -23.26827 -21.75587 -20.83812 -19.62078 -18.30574 -17.52418 -16.48627 -16.16773 -15.79782 -15.63080 -15.52545 -15.17296 -14.70673 -14.27672 -14.02922 -13.94300 -13.47880 -13.17718 -13.07923 -12.81545 -12.55243 -12.20927 -12.03269 -11.80470 -11.65425 -11.58807 -11.30844 -11.09973 -11.01005 -10.55805 -9.95698 -9.28722 -8.96981 -8.18189 -6.39657 0.16832 0.84811 1.08973 1.47629 1.50013 1.60728 1.73101 1.76585 2.31001 2.68770 3.35999 3.54098 3.97546 4.22246 4.30927 4.36153 4.52156 4.59939 4.64850 4.67409 4.72773 4.88658 4.97736 5.09281 5.17171 5.22317 5.38170 5.45439 5.54841 5.59918 5.82042 5.93658 6.02861 6.18015 6.38918 6.78308 6.90847 7.03832 8.04705 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.018363 B = 0.009934 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.419711 B = 2817.895095 C = 4083.376160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.052 4.052 3 C -0.202 4.202 4 C -0.063 4.063 5 C -0.193 4.193 6 C 0.149 3.851 7 O -0.585 6.585 8 C -0.062 4.062 9 C -0.137 4.137 10 C -0.214 4.214 11 S 0.060 5.940 12 C -0.231 4.231 13 C 0.103 3.897 14 C -0.547 4.547 15 H 0.078 0.922 16 C 0.004 3.996 17 N -0.786 5.786 18 Si 1.094 2.906 19 H -0.264 1.264 20 H -0.261 1.261 21 H -0.269 1.269 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.117 0.883 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.396 0.604 31 H 0.160 0.840 32 H 0.187 0.813 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 4.093 -5.747 7.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 C -0.206 4.206 4 C -0.083 4.083 5 C -0.197 4.197 6 C 0.071 3.929 7 O -0.393 6.393 8 C -0.070 4.070 9 C -0.168 4.168 10 C -0.348 4.348 11 S 0.324 5.676 12 C -0.347 4.347 13 C 0.097 3.903 14 C -0.576 4.576 15 H 0.096 0.904 16 C -0.214 4.214 17 N -0.409 5.409 18 Si 0.912 3.088 19 H -0.189 1.189 20 H -0.185 1.185 21 H -0.194 1.194 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.134 0.866 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.245 0.755 31 H 0.177 0.823 32 H 0.204 0.796 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.343 3.895 -2.046 4.600 hybrid contribution 0.220 0.226 -3.527 3.541 sum -1.124 4.121 -5.572 7.021 Atomic orbital electron populations 1.21623 0.95084 1.01355 1.00790 1.20066 0.95979 0.92383 1.00492 1.20039 1.11118 0.96966 0.92511 1.20345 0.97185 0.94253 0.96500 1.19300 1.12158 0.95804 0.92436 1.20484 0.98572 0.90050 0.83765 1.86434 1.90744 1.43468 1.18669 1.19168 1.01267 0.93993 0.92579 1.21069 1.03914 0.94132 0.97706 1.25586 1.07561 1.04261 0.97365 1.84144 1.69779 1.03720 1.09946 1.22949 1.17235 0.99036 0.95459 1.17183 0.90441 0.88662 0.93985 1.20469 1.15607 1.27066 0.94413 0.90414 1.27953 0.93913 0.91492 1.08029 1.70568 1.10958 1.29868 1.29457 0.83276 0.76104 0.78998 0.70419 1.18881 1.18496 1.19421 0.94403 0.93273 0.91222 0.92033 0.93208 0.86554 0.92497 0.92770 0.75466 0.82304 0.79604 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.81 71.98 0.71 -4.12 16 2 C -0.05 -2.17 5.44 29.85 0.16 -2.01 16 3 C -0.20 -9.80 5.19 -19.42 -0.10 -9.90 16 4 C -0.06 -2.89 8.94 22.08 0.20 -2.69 16 5 C -0.19 -8.38 5.96 -19.20 -0.11 -8.49 16 6 C 0.15 4.80 7.01 71.24 0.50 5.30 16 7 O -0.58 -17.37 12.07 -148.98 -1.80 -19.17 16 8 C -0.06 -2.85 5.97 -20.37 -0.12 -2.97 16 9 C -0.14 -5.16 9.96 23.31 0.23 -4.93 16 10 C -0.21 -7.96 11.03 67.00 0.74 -7.22 16 11 S 0.06 2.75 19.88 -56.49 -1.12 1.63 16 12 C -0.23 -11.80 5.29 23.53 0.12 -11.68 16 13 C 0.10 5.47 5.01 -21.12 -0.11 5.36 16 14 C -0.55 -28.92 7.66 23.34 0.18 -28.74 16 15 H 0.08 4.06 6.43 -2.91 -0.02 4.04 16 16 C 0.00 0.22 3.98 85.25 0.34 0.56 16 17 N -0.79 -42.11 11.60 21.83 0.25 -41.86 16 18 Si 1.09 44.27 30.01 68.60 2.06 46.33 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 21 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 22 H 0.04 1.51 7.11 -2.39 -0.02 1.49 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.06 2.32 8.05 -2.39 -0.02 2.30 16 26 H 0.05 2.22 7.21 -2.39 -0.02 2.21 16 27 H 0.12 4.96 6.92 -2.91 -0.02 4.94 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.40 6.83 9.12 -74.06 -0.68 6.16 16 31 H 0.16 4.67 8.02 -2.91 -0.02 4.65 16 32 H 0.19 5.30 8.06 -2.91 -0.02 5.28 16 33 H 0.28 15.83 7.11 -92.71 -0.66 15.17 16 Total: -1.00 -62.62 286.73 2.70 -59.93 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.57 Total: 24.67 kcal Atomic # 6 Polarization: -74.26 SS G_CDS: 2.74 Total: -71.53 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.25 Total: -41.86 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -1.80 Total: -19.17 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.06 Total: 46.33 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.12 Total: 1.63 kcal Total: -62.62 2.70 -59.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396306349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.515 kcal (2) G-P(sol) polarization free energy of solvation -62.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds