Wall clock time and date at job start Mon Mar 30 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47297 * 2 1 4 4 C 1.37850 * 119.54463 * 264.99804 * 3 2 1 5 5 C 1.37846 * 120.73491 * 179.97438 * 4 3 2 6 6 C 1.40468 * 119.88536 * 0.02562 * 5 4 3 7 7 C 1.40962 * 120.10703 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00198 * 150.03019 * 7 6 5 9 9 C 1.39910 * 119.99362 * 330.30778 * 7 6 5 10 10 N 1.30880 * 119.99513 * 161.45204 * 9 7 6 11 11 Si 1.86801 * 120.00555 * 341.45787 * 9 7 6 12 12 H 1.48502 * 109.47178 * 95.41436 * 11 9 7 13 13 H 1.48501 * 109.47043 * 215.41540 * 11 9 7 14 14 H 1.48503 * 109.46614 * 335.41733 * 11 9 7 15 15 C 1.42061 * 119.79464 * 0.27305 * 6 5 4 16 16 S 1.75891 * 130.46428 * 180.32644 * 15 6 5 17 17 C 1.75296 * 92.22460 * 179.52916 * 16 15 6 18 18 O 1.35740 * 124.36160 * 179.77150 * 17 16 15 19 19 C 1.42895 * 117.00318 * 0.02625 * 18 17 16 20 20 C 1.32524 * 111.27177 * 359.79375 * 17 16 15 21 21 C 1.39441 * 119.67641 * 359.42615 * 15 6 5 22 22 H 1.09004 * 109.47115 * 60.00143 * 1 2 3 23 23 H 1.08999 * 109.47575 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47204 * 300.00307 * 1 2 3 25 25 H 1.08998 * 109.47105 * 239.99172 * 2 1 3 26 26 H 1.08998 * 109.46706 * 119.99927 * 2 1 3 27 27 H 1.07996 * 119.63252 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.05717 * 179.97438 * 5 4 3 29 29 H 0.97006 * 120.00189 * 179.97438 * 10 9 7 30 30 H 1.09004 * 109.47702 * 179.97438 * 19 18 17 31 31 H 1.09002 * 109.47038 * 299.99973 * 19 18 17 32 32 H 1.08996 * 109.47439 * 59.99916 * 19 18 17 33 33 H 1.08002 * 122.61930 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3576 2.0268 -1.1947 5 6 2.8188 3.3255 -1.2233 6 6 2.9616 4.0440 -0.0247 7 6 3.4324 5.3725 -0.0486 8 1 3.1122 6.0725 0.7088 9 6 4.3101 5.7855 -1.0569 10 7 4.4651 7.0607 -1.3074 11 14 5.2604 4.5171 -2.0455 12 1 4.5300 4.2220 -3.3044 13 1 6.6084 5.0498 -2.3685 14 1 5.3981 3.2710 -1.2495 15 6 2.6351 3.4260 1.2120 16 16 2.6985 4.0540 2.8537 17 6 2.1044 2.5479 3.5257 18 8 1.9041 2.3260 4.8498 19 6 2.2021 3.4029 5.7405 20 6 1.8765 1.6538 2.5745 21 6 2.1637 2.1137 1.2248 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2497 1.4780 -2.1185 28 1 3.0708 3.7894 -2.1654 29 1 5.0739 7.3472 -2.0062 30 1 1.9980 3.0937 6.7657 31 1 3.2536 3.6733 5.6447 32 1 1.5814 4.2634 5.4907 33 1 1.5061 0.6613 2.7850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396306507.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:30 Heat of formation + Delta-G solvation = -14.331478 kcal Electronic energy + Delta-G solvation = -17124.368213 eV Core-core repulsion = 14434.011719 eV Total energy + Delta-G solvation = -2690.356495 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.85908 -38.16503 -34.59676 -33.65112 -32.61493 -29.47728 -28.46375 -26.42277 -25.39487 -22.74119 -22.10152 -20.45839 -20.23689 -17.82760 -16.93416 -15.78149 -15.56735 -15.44764 -15.27088 -14.25115 -13.75383 -13.53360 -13.17433 -12.95607 -12.66576 -12.51693 -12.24839 -11.85105 -11.83092 -11.51265 -11.09656 -10.98691 -10.86265 -10.63933 -10.41594 -10.19236 -9.81123 -9.50433 -9.49469 -9.19722 -8.29236 -7.27828 -7.09353 -6.86627 -4.58410 1.76639 2.06993 2.41243 2.84425 3.02100 3.14907 3.16897 3.31700 3.56693 3.90422 4.37309 5.18093 5.21614 5.27156 5.52029 5.57738 5.61079 5.88520 5.98291 5.99021 6.13362 6.27851 6.35616 6.40972 6.45953 6.55650 6.70354 6.79241 7.07719 7.16619 7.27394 7.36273 7.57680 7.75225 7.92049 8.18473 8.43313 8.61940 9.91733 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.008940 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.630878 B = 3131.306317 C = 4500.100394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.187 4.187 4 C -0.054 4.054 5 C -0.248 4.248 6 C 0.132 3.868 7 C -0.440 4.440 8 H 0.093 0.907 9 C 0.086 3.914 10 N -0.797 5.797 11 Si 0.913 3.087 12 H -0.267 1.267 13 H -0.290 1.290 14 H -0.241 1.241 15 C -0.205 4.205 16 S 0.043 5.957 17 C 0.017 3.983 18 O -0.292 6.292 19 C 0.022 3.978 20 C -0.178 4.178 21 C -0.001 4.001 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.288 0.712 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.530 -7.184 5.463 9.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.190 4.190 4 C -0.073 4.073 5 C -0.270 4.270 6 C 0.126 3.874 7 C -0.468 4.468 8 H 0.111 0.889 9 C -0.134 4.134 10 N -0.420 5.420 11 Si 0.739 3.261 12 H -0.193 1.193 13 H -0.217 1.217 14 H -0.164 1.164 15 C -0.320 4.320 16 S 0.302 5.698 17 C -0.142 4.142 18 O -0.207 6.207 19 C -0.074 4.074 20 C -0.209 4.209 21 C -0.008 4.008 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.088 -5.737 6.156 8.670 hybrid contribution 0.107 -1.268 -1.047 1.648 sum -1.982 -7.005 5.109 8.894 Atomic orbital electron populations 1.21772 0.96438 0.99955 1.01920 1.20150 0.94841 0.93978 1.00759 1.18851 1.13304 0.95976 0.90889 1.20281 0.96959 0.94442 0.95626 1.20759 1.13505 0.96363 0.96414 1.17000 0.89777 0.92357 0.88240 1.19433 1.22929 0.94334 1.10073 0.88944 1.26194 0.95991 0.96151 0.95099 1.69711 1.29241 1.16758 1.26296 0.86259 0.77598 0.82010 0.80235 1.19338 1.21707 1.16424 1.22244 1.17999 0.97120 0.94638 1.83838 1.72329 1.12484 1.01120 1.22869 1.05865 0.99410 0.86070 1.85905 1.83451 1.38942 1.12375 1.23130 1.01241 0.89794 0.93245 1.20274 1.10356 1.00212 0.90061 1.18350 0.98716 0.92411 0.91347 0.93038 0.93886 0.92890 0.92682 0.92630 0.88251 0.87539 0.90129 0.88143 0.92403 0.92451 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.89 37.16 0.37 -1.78 16 2 C -0.06 -0.99 5.82 -27.88 -0.16 -1.15 16 3 C -0.19 -3.86 5.21 -103.59 -0.54 -4.40 16 4 C -0.05 -1.14 9.58 -39.87 -0.38 -1.53 16 5 C -0.25 -5.89 7.16 -38.89 -0.28 -6.17 16 6 C 0.13 3.36 5.13 -106.56 -0.55 2.81 16 7 C -0.44 -11.71 9.31 -37.93 -0.35 -12.06 16 8 H 0.09 2.59 8.00 -52.49 -0.42 2.17 16 9 C 0.09 2.21 5.39 -17.33 -0.09 2.12 16 10 N -0.80 -20.68 13.93 55.55 0.77 -19.91 16 11 Si 0.91 20.40 24.52 -169.99 -4.17 16.23 16 12 H -0.27 -5.74 6.70 56.52 0.38 -5.36 16 13 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.24 -5.58 6.88 56.52 0.39 -5.19 16 15 C -0.21 -4.91 6.36 -37.67 -0.24 -5.15 16 16 S 0.04 0.90 21.53 -107.50 -2.31 -1.42 16 17 C 0.02 0.32 7.11 28.82 0.20 0.53 16 18 O -0.29 -4.91 10.56 -18.93 -0.20 -5.11 16 19 C 0.02 0.28 10.23 101.05 1.03 1.31 16 20 C -0.18 -3.53 9.83 -38.62 -0.38 -3.91 16 21 C 0.00 -0.03 5.97 -105.40 -0.63 -0.66 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.84 8.03 -51.93 -0.42 0.42 16 26 H 0.06 0.89 7.47 -51.93 -0.39 0.50 16 27 H 0.10 1.83 8.04 -52.49 -0.42 1.40 16 28 H 0.11 2.49 4.70 -52.49 -0.25 2.24 16 29 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.71 8.02 -51.93 -0.42 0.29 16 32 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 33 H 0.13 2.37 7.65 -52.49 -0.40 1.97 16 LS Contribution 289.02 15.07 4.36 4.36 Total: -1.00 -27.68 289.02 -7.54 -35.22 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -3.99 Total: 0.67 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -2.00 Total: -30.03 kcal Atomic # 7 Polarization: -20.68 SS G_CDS: 0.77 Total: -19.91 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.20 Total: -5.11 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.17 Total: 16.23 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.31 Total: -1.42 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.68 -7.54 -35.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396306507.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.891 kcal (2) G-P(sol) polarization free energy of solvation -27.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds