Wall clock time and date at job start Mon Mar 30 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47297 * 2 1 4 4 C 1.37850 * 119.54463 * 264.99804 * 3 2 1 5 5 C 1.37846 * 120.73491 * 179.97438 * 4 3 2 6 6 C 1.40468 * 119.88536 * 0.02562 * 5 4 3 7 7 C 1.40962 * 120.10703 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00198 * 150.03019 * 7 6 5 9 9 C 1.39910 * 119.99362 * 330.30778 * 7 6 5 10 10 N 1.30880 * 119.99513 * 161.45204 * 9 7 6 11 11 Si 1.86801 * 120.00555 * 341.45787 * 9 7 6 12 12 H 1.48502 * 109.47178 * 95.41436 * 11 9 7 13 13 H 1.48501 * 109.47043 * 215.41540 * 11 9 7 14 14 H 1.48503 * 109.46614 * 335.41733 * 11 9 7 15 15 C 1.42061 * 119.79464 * 0.27305 * 6 5 4 16 16 S 1.75891 * 130.46428 * 180.32644 * 15 6 5 17 17 C 1.75296 * 92.22460 * 179.52916 * 16 15 6 18 18 O 1.35740 * 124.36160 * 179.77150 * 17 16 15 19 19 C 1.42895 * 117.00318 * 0.02625 * 18 17 16 20 20 C 1.32524 * 111.27177 * 359.79375 * 17 16 15 21 21 C 1.39441 * 119.67641 * 359.42615 * 15 6 5 22 22 H 1.09004 * 109.47115 * 60.00143 * 1 2 3 23 23 H 1.08999 * 109.47575 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47204 * 300.00307 * 1 2 3 25 25 H 1.08998 * 109.47105 * 239.99172 * 2 1 3 26 26 H 1.08998 * 109.46706 * 119.99927 * 2 1 3 27 27 H 1.07996 * 119.63252 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.05717 * 179.97438 * 5 4 3 29 29 H 0.97006 * 120.00189 * 179.97438 * 10 9 7 30 30 H 1.09004 * 109.47702 * 179.97438 * 19 18 17 31 31 H 1.09002 * 109.47038 * 299.99973 * 19 18 17 32 32 H 1.08996 * 109.47439 * 59.99916 * 19 18 17 33 33 H 1.08002 * 122.61930 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3576 2.0268 -1.1947 5 6 2.8188 3.3255 -1.2233 6 6 2.9616 4.0440 -0.0247 7 6 3.4324 5.3725 -0.0486 8 1 3.1122 6.0725 0.7088 9 6 4.3101 5.7855 -1.0569 10 7 4.4651 7.0607 -1.3074 11 14 5.2604 4.5171 -2.0455 12 1 4.5300 4.2220 -3.3044 13 1 6.6084 5.0498 -2.3685 14 1 5.3981 3.2710 -1.2495 15 6 2.6351 3.4260 1.2120 16 16 2.6985 4.0540 2.8537 17 6 2.1044 2.5479 3.5257 18 8 1.9041 2.3260 4.8498 19 6 2.2021 3.4029 5.7405 20 6 1.8765 1.6538 2.5745 21 6 2.1637 2.1137 1.2248 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2497 1.4780 -2.1185 28 1 3.0708 3.7894 -2.1654 29 1 5.0739 7.3472 -2.0062 30 1 1.9980 3.0937 6.7657 31 1 3.2536 3.6733 5.6447 32 1 1.5814 4.2634 5.4907 33 1 1.5061 0.6613 2.7850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396306507.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:30 Heat of formation + Delta-G solvation = -29.559739 kcal Electronic energy + Delta-G solvation = -17125.028560 eV Core-core repulsion = 14434.011719 eV Total energy + Delta-G solvation = -2691.016842 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40610 -39.67119 -36.34707 -35.17016 -34.31372 -31.11852 -29.95446 -27.69256 -27.07977 -24.33137 -23.68571 -22.00952 -21.89443 -19.51703 -18.57616 -17.46208 -16.99004 -16.88306 -16.82439 -15.83717 -15.40181 -15.05112 -14.75993 -14.50188 -14.19934 -14.12962 -13.75625 -13.21177 -13.09590 -13.02744 -12.71675 -12.58628 -12.53216 -12.17888 -11.85979 -11.76819 -11.48586 -11.18973 -11.14764 -10.89694 -10.00061 -8.98459 -8.95997 -8.56473 -6.51242 0.10591 0.47402 0.64247 1.18052 1.23664 1.37046 1.42782 1.57685 2.09987 2.23801 2.56333 3.34175 4.13627 4.24257 4.25760 4.26535 4.32106 4.48590 4.55999 4.62074 4.72719 4.81935 4.87881 4.92903 5.03530 5.14997 5.17428 5.33109 5.47275 5.52213 5.59165 5.76289 5.94119 6.02534 6.11539 6.30978 6.59233 6.71037 8.09735 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.008940 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.630878 B = 3131.306317 C = 4500.100394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.171 4.171 4 C -0.063 4.063 5 C -0.258 4.258 6 C 0.111 3.889 7 C -0.476 4.476 8 H 0.057 0.943 9 C 0.052 3.948 10 N -0.839 5.839 11 Si 0.965 3.035 12 H -0.251 1.251 13 H -0.276 1.276 14 H -0.256 1.256 15 C -0.238 4.238 16 S 0.035 5.965 17 C 0.033 3.967 18 O -0.292 6.292 19 C 0.012 3.988 20 C -0.188 4.188 21 C -0.015 4.015 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.135 0.865 28 H 0.106 0.894 29 H 0.297 0.703 30 H 0.142 0.858 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -10.407 5.779 12.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 C -0.174 4.174 4 C -0.083 4.083 5 C -0.281 4.281 6 C 0.105 3.895 7 C -0.505 4.505 8 H 0.075 0.925 9 C -0.164 4.164 10 N -0.464 5.464 11 Si 0.787 3.213 12 H -0.176 1.176 13 H -0.203 1.203 14 H -0.179 1.179 15 C -0.352 4.352 16 S 0.293 5.707 17 C -0.127 4.127 18 O -0.207 6.207 19 C -0.083 4.083 20 C -0.218 4.218 21 C -0.022 4.022 22 H 0.066 0.934 23 H 0.092 0.908 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.152 0.848 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.160 0.840 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.756 -8.959 6.482 11.396 hybrid contribution 0.172 -0.423 -0.930 1.036 sum -2.584 -9.382 5.552 11.204 Atomic orbital electron populations 1.21718 0.94919 1.01785 1.01235 1.20268 0.96004 0.91094 1.02417 1.19502 1.09979 0.97827 0.90073 1.20683 0.96311 0.93751 0.97511 1.20940 1.13732 0.97540 0.95844 1.17175 0.90452 0.92163 0.89662 1.19333 1.25596 0.94891 1.10692 0.92493 1.26819 0.96195 0.97632 0.95723 1.69731 1.30877 1.17941 1.27873 0.85487 0.77193 0.79244 0.79327 1.17574 1.20292 1.17933 1.22607 1.18643 0.98461 0.95528 1.83784 1.72806 1.14000 1.00099 1.22923 1.04371 0.98011 0.87395 1.85918 1.83058 1.40494 1.11220 1.23512 1.01458 0.89129 0.94248 1.20397 1.10969 1.01416 0.89037 1.18795 0.98438 0.91841 0.93133 0.93354 0.90837 0.94025 0.90519 0.91550 0.84752 0.87617 0.89270 0.84042 0.92249 0.92316 0.82347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.89 71.98 0.71 -2.88 16 2 C -0.06 -1.75 5.82 29.85 0.17 -1.57 16 3 C -0.17 -6.61 5.21 -19.19 -0.10 -6.71 16 4 C -0.06 -2.56 9.58 22.08 0.21 -2.35 16 5 C -0.26 -12.22 7.16 22.72 0.16 -12.06 16 6 C 0.11 5.80 5.13 -21.12 -0.11 5.69 16 7 C -0.48 -26.86 9.31 23.34 0.22 -26.64 16 8 H 0.06 3.48 8.00 -2.91 -0.02 3.45 16 9 C 0.05 2.80 5.39 85.24 0.46 3.26 16 10 N -0.84 -45.57 13.93 21.82 0.30 -45.27 16 11 Si 0.96 42.57 24.52 68.60 1.68 44.25 16 12 H -0.25 -10.26 6.70 99.48 0.67 -9.60 16 13 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 14 H -0.26 -11.71 6.88 99.48 0.68 -11.03 16 15 C -0.24 -11.53 6.36 23.51 0.15 -11.39 16 16 S 0.03 1.46 21.53 -56.49 -1.22 0.24 16 17 C 0.03 1.21 7.11 66.68 0.47 1.68 16 18 O -0.29 -9.11 10.56 -90.64 -0.96 -10.06 16 19 C 0.01 0.27 10.23 113.37 1.16 1.43 16 20 C -0.19 -7.07 9.83 22.99 0.23 -6.84 16 21 C -0.01 -0.63 5.97 -20.37 -0.12 -0.76 16 22 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.08 1.93 8.03 -2.39 -0.02 1.91 16 26 H 0.07 1.81 7.47 -2.39 -0.02 1.80 16 27 H 0.13 4.43 8.04 -2.91 -0.02 4.41 16 28 H 0.11 4.92 4.70 -2.91 -0.01 4.90 16 29 H 0.30 14.38 8.30 -92.70 -0.77 13.62 16 30 H 0.14 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.06 1.35 8.02 -2.39 -0.02 1.33 16 32 H 0.06 1.34 8.02 -2.39 -0.02 1.32 16 33 H 0.16 5.09 7.65 -2.91 -0.02 5.06 16 Total: -1.00 -62.10 289.02 4.48 -57.61 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.05 Total: 12.35 kcal Atomic # 6 Polarization: -62.74 SS G_CDS: 3.62 Total: -59.12 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.30 Total: -45.27 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.96 Total: -10.06 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.68 Total: 44.25 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.22 Total: 0.24 kcal Total: -62.10 4.48 -57.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396306507.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.055 kcal (2) G-P(sol) polarization free energy of solvation -62.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds