Wall clock time and date at job start Mon Mar 30 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50709 * 109.47027 * 2 1 4 4 C 1.35707 * 119.58265 * 265.00252 * 3 2 1 5 5 C 1.41135 * 120.09752 * 179.97438 * 4 3 2 6 6 C 1.41278 * 120.05327 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00261 * 24.85955 * 6 5 4 8 8 C 1.39857 * 119.99546 * 204.86092 * 6 5 4 9 9 N 1.30896 * 120.00020 * 18.03317 * 8 6 5 10 10 Si 1.86799 * 119.99957 * 198.02595 * 8 6 5 11 11 H 1.48506 * 109.46950 * 60.00542 * 10 8 6 12 12 H 1.48499 * 109.47239 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47418 * 300.00353 * 10 8 6 14 14 C 1.39939 * 119.88397 * 359.97438 * 5 4 3 15 15 C 1.40484 * 119.98158 * 0.02562 * 14 5 4 16 16 C 1.45579 * 129.19595 * 179.97438 * 15 14 5 17 17 C 1.31696 * 114.89105 * 180.02562 * 16 15 14 18 18 C 1.50700 * 124.23876 * 180.02562 * 17 16 15 19 19 O 1.42908 * 109.46965 * 90.00077 * 18 17 16 20 20 S 1.75258 * 111.52418 * 0.02562 * 17 16 15 21 21 C 1.40182 * 119.03567 * 359.75328 * 15 14 5 22 22 H 1.09005 * 109.47091 * 299.99870 * 1 2 3 23 23 H 1.08995 * 109.47219 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47216 * 59.99988 * 1 2 3 25 25 H 1.09003 * 109.47021 * 119.99586 * 2 1 3 26 26 H 1.08995 * 109.47175 * 240.00044 * 2 1 3 27 27 H 1.07992 * 119.95122 * 359.95419 * 4 3 2 28 28 H 0.97000 * 119.99883 * 179.97438 * 9 8 6 29 29 H 1.08001 * 120.00378 * 180.02562 * 14 5 4 30 30 H 1.08005 * 122.55416 * 359.97438 * 16 15 14 31 31 H 1.08999 * 109.47482 * 210.00116 * 18 17 16 32 32 H 1.09007 * 109.47316 * 330.00701 * 18 17 16 33 33 H 0.96700 * 113.99901 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3526 2.0183 -1.1757 5 6 2.8235 3.3487 -1.1884 6 6 3.1571 3.9695 -2.4128 7 1 2.7041 3.6288 -3.3321 8 6 4.0741 5.0253 -2.4344 9 7 4.8796 5.2134 -1.4199 10 14 4.1494 6.1669 -3.9110 11 1 2.8334 6.8310 -4.0909 12 1 5.1971 7.1955 -3.6886 13 1 4.4779 5.3815 -5.1277 14 6 2.9594 4.0517 0.0140 15 6 2.6276 3.4325 1.2306 16 6 2.6910 3.9681 2.5828 17 6 2.3093 3.1341 3.5278 18 6 2.2903 3.4687 4.9971 19 8 1.0184 4.0203 5.3436 20 16 1.8260 1.5863 2.8626 21 6 2.1577 2.1119 1.2160 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 1.8933 -0.5138 -0.8899 27 1 2.2472 1.4748 -2.1029 28 1 5.5158 5.9455 -1.4351 29 1 3.3192 5.0700 0.0065 30 1 3.0264 4.9726 2.7949 31 1 2.4641 2.5631 5.5782 32 1 3.0730 4.1957 5.2143 33 1 0.9344 4.2593 6.2768 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396307062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:33 Heat of formation + Delta-G solvation = -32.270398 kcal Electronic energy + Delta-G solvation = -16840.855431 eV Core-core repulsion = 14149.721047 eV Total energy + Delta-G solvation = -2691.134385 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.34453 -36.95987 -34.75067 -34.32775 -31.98038 -29.64860 -28.29590 -25.93180 -25.03751 -23.12519 -21.36828 -19.89427 -19.44890 -17.34644 -16.89973 -16.30103 -15.29138 -14.96065 -14.66389 -13.85220 -13.75182 -13.43703 -13.16872 -12.83472 -12.54048 -12.19015 -11.92199 -11.57443 -11.37438 -11.25944 -11.01119 -10.96612 -10.74200 -10.48031 -10.27902 -9.94847 -9.83570 -9.71266 -9.43098 -9.09151 -8.20745 -7.37261 -6.82711 -6.65685 -4.38876 1.79581 2.51401 2.64742 3.03605 3.04233 3.08174 3.09849 3.38310 3.88413 4.48511 4.62619 5.23668 5.36693 5.48203 5.54094 5.54806 5.59808 5.94875 6.02579 6.21186 6.29557 6.38367 6.44066 6.60080 6.70609 6.80334 6.88230 7.09464 7.20074 7.44886 7.54585 7.68953 7.74214 7.90771 8.10005 8.50375 8.78342 8.81283 10.11735 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.019617 B = 0.006664 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.960101 B = 4200.450673 C = 5385.380120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C -0.036 4.036 4 C -0.173 4.173 5 C 0.107 3.893 6 C -0.458 4.458 7 H 0.080 0.920 8 C 0.076 3.924 9 N -0.790 5.790 10 Si 0.909 3.091 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.265 1.265 14 C -0.141 4.141 15 C -0.057 4.057 16 C -0.081 4.081 17 C -0.189 4.189 18 C 0.152 3.848 19 O -0.565 6.565 20 S 0.014 5.986 21 C -0.215 4.215 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.282 0.718 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 -2.727 7.061 8.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.040 4.040 4 C -0.194 4.194 5 C 0.103 3.897 6 C -0.488 4.488 7 H 0.098 0.902 8 C -0.143 4.143 9 N -0.415 5.415 10 Si 0.733 3.267 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.190 1.190 14 C -0.163 4.163 15 C -0.063 4.063 16 C -0.113 4.113 17 C -0.304 4.304 18 C 0.073 3.927 19 O -0.371 6.371 20 S 0.274 5.726 21 C -0.330 4.330 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.321 -3.995 7.186 8.867 hybrid contribution 0.895 2.003 -0.653 2.289 sum -2.426 -1.992 6.533 7.247 Atomic orbital electron populations 1.21699 0.95527 1.00471 1.02284 1.20484 0.95703 0.94244 1.01413 1.18464 1.00186 0.94221 0.91133 1.20656 1.07942 0.95553 0.95214 1.17387 0.89158 0.89960 0.93199 1.19484 1.21359 1.13571 0.94348 0.90197 1.25905 0.93685 0.97169 0.97517 1.69841 1.14082 1.26870 1.30704 0.86350 0.78960 0.79791 0.81570 1.18753 1.20306 1.18957 1.21140 1.05847 1.00020 0.89297 1.19063 1.01377 0.92969 0.92884 1.20973 0.99763 0.99017 0.91593 1.23138 1.10903 0.99072 0.97292 1.20388 0.85330 0.96740 0.90202 1.86642 1.34827 1.84724 1.30871 1.83169 1.74978 1.14401 1.00029 1.21716 1.18146 0.98765 0.94333 0.92591 0.93390 0.92664 0.92313 0.91761 0.87929 0.90682 0.85908 0.85479 0.93041 0.92364 0.77952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.89 37.16 0.37 -1.93 16 2 C -0.08 -1.46 5.86 -27.88 -0.16 -1.63 16 3 C -0.04 -0.79 5.12 -104.70 -0.54 -1.33 16 4 C -0.17 -4.11 9.30 -39.39 -0.37 -4.48 16 5 C 0.11 2.79 5.56 -107.01 -0.59 2.19 16 6 C -0.46 -11.79 9.03 -37.82 -0.34 -12.13 16 7 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 8 C 0.08 1.85 5.12 -17.34 -0.09 1.76 16 9 N -0.79 -20.04 10.98 55.54 0.61 -19.43 16 10 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 16 11 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 12 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 13 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 14 C -0.14 -3.67 8.75 -38.10 -0.33 -4.00 16 15 C -0.06 -1.40 6.03 -105.40 -0.64 -2.04 16 16 C -0.08 -1.73 10.21 -38.53 -0.39 -2.12 16 17 C -0.19 -3.66 6.00 -36.18 -0.22 -3.88 16 18 C 0.15 2.24 7.47 36.01 0.27 2.50 16 19 O -0.57 -8.19 13.64 -35.23 -0.48 -8.67 16 20 S 0.01 0.28 22.59 -107.50 -2.43 -2.15 16 21 C -0.22 -4.98 6.33 -38.03 -0.24 -5.23 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 1.03 7.76 -51.93 -0.40 0.63 16 26 H 0.06 1.07 8.01 -51.93 -0.42 0.66 16 27 H 0.10 2.25 8.03 -52.49 -0.42 1.83 16 28 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 29 H 0.12 3.29 6.15 -52.49 -0.32 2.97 16 30 H 0.13 2.46 8.06 -52.48 -0.42 2.04 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.37 3.14 9.12 45.56 0.42 3.55 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -29.07 296.84 -9.36 -38.43 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -3.23 Total: 6.42 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: -3.27 Total: -32.31 kcal Atomic # 7 Polarization: -20.04 SS G_CDS: 0.61 Total: -19.43 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.48 Total: -8.67 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.43 Total: -2.15 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.07 -9.36 -38.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.161 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds