Wall clock time and date at job start Mon Mar 30 2020 06:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46752 * 2 1 4 4 C 1.38882 * 119.90126 * 90.00404 * 3 2 1 5 5 C 1.36016 * 120.59978 * 180.02562 * 4 3 2 6 6 C 1.41738 * 120.50288 * 0.23411 * 5 4 3 7 7 C 1.40127 * 118.64906 * 359.51948 * 6 5 4 8 8 C 1.37710 * 119.90321 * 270.02102 * 3 2 1 9 9 S 1.75973 * 110.13398 * 180.27640 * 7 6 5 10 10 C 1.75433 * 91.91250 * 359.70931 * 9 7 6 11 11 C 1.39651 * 124.84791 * 179.97438 * 10 9 7 12 12 H 1.07993 * 120.00516 * 180.52674 * 11 10 9 13 13 C 1.40055 * 119.99374 * 0.52514 * 11 10 9 14 14 N 1.30894 * 120.00393 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99692 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47292 * 59.99997 * 15 13 11 17 17 H 1.48498 * 109.47316 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47185 * 300.00096 * 15 13 11 19 19 C 1.37634 * 110.31021 * 0.40631 * 10 9 7 20 20 O 1.35633 * 122.63007 * 179.59583 * 19 10 9 21 21 C 1.42898 * 117.00268 * 269.97971 * 20 19 10 22 22 H 1.08996 * 109.47543 * 59.99791 * 1 2 3 23 23 H 1.08999 * 109.46552 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47022 * 299.99558 * 1 2 3 25 25 H 1.08994 * 109.47279 * 240.00426 * 2 1 3 26 26 H 1.08997 * 109.47095 * 119.99580 * 2 1 3 27 27 H 1.07994 * 119.70394 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.74522 * 179.97438 * 5 4 3 29 29 H 1.07994 * 119.84498 * 0.02562 * 8 3 2 30 30 H 0.96998 * 120.00135 * 180.02562 * 14 13 11 31 31 H 1.09006 * 109.46925 * 299.99716 * 21 20 19 32 32 H 1.09002 * 109.47419 * 59.98947 * 21 20 19 33 33 H 1.08997 * 109.47648 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2631 2.0736 1.2039 5 6 2.7159 3.3560 1.2205 6 6 2.9553 4.0502 0.0082 7 6 2.7257 3.3849 -1.2035 8 6 2.2607 2.0683 -1.1938 9 16 3.0999 4.4453 -2.5571 10 6 3.5465 5.7575 -1.4818 11 6 3.9842 7.0166 -1.8982 12 1 4.2477 7.7660 -1.1666 13 6 4.0816 7.3074 -3.2648 14 7 3.7619 6.3993 -4.1516 15 14 4.6678 8.9913 -3.8218 16 1 6.0384 9.2344 -3.3048 17 1 4.6813 9.0448 -5.3058 18 1 3.7490 10.0336 -3.2978 19 6 3.4132 5.3659 -0.1691 20 8 3.7010 6.1865 0.8718 21 6 5.0410 6.1603 1.3673 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0807 1.5585 2.1355 28 1 2.8903 3.8506 2.1647 29 1 2.0786 1.5556 -2.1266 30 1 3.8297 6.6006 -5.0980 31 1 5.2813 5.1545 1.7122 32 1 5.7286 6.4451 0.5709 33 1 5.1356 6.8614 2.1965 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396307216.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:51 Heat of formation + Delta-G solvation = -34.937417 kcal Electronic energy + Delta-G solvation = -17011.910531 eV Core-core repulsion = 14320.660495 eV Total energy + Delta-G solvation = -2691.250035 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.66964 -37.01180 -34.56575 -33.81228 -31.44528 -29.67188 -28.58682 -26.35433 -25.02016 -23.02016 -21.74691 -20.62969 -19.14084 -17.98886 -16.03243 -15.90714 -15.30437 -14.50721 -14.40388 -14.24668 -13.69272 -13.29078 -13.01804 -12.88354 -12.48368 -12.44520 -12.11763 -11.82771 -11.49766 -11.36083 -11.19524 -10.93138 -10.66337 -10.61178 -10.26059 -10.23345 -9.95210 -9.24882 -9.18442 -8.55523 -8.35028 -7.38609 -7.25259 -6.35884 -4.67750 2.02578 2.42591 2.77757 2.81207 2.85966 3.17613 3.35815 3.52799 3.76287 4.56658 4.80133 5.39566 5.42450 5.50409 5.79247 5.86576 5.90170 6.10056 6.16788 6.20277 6.23140 6.29958 6.42465 6.50503 6.52960 6.59756 6.65026 6.94527 7.14378 7.24728 7.48571 7.51259 7.61209 7.82852 7.94382 8.11717 8.34659 9.06926 9.56265 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.028046 B = 0.006412 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.104856 B = 4365.898900 C = 5221.810523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.159 4.159 4 C -0.104 4.104 5 C -0.139 4.139 6 C 0.005 3.995 7 C -0.257 4.257 8 C -0.050 4.050 9 S 0.154 5.846 10 C 0.036 3.964 11 C -0.362 4.362 12 H 0.103 0.897 13 C 0.051 3.949 14 N -0.772 5.772 15 Si 0.941 3.059 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.257 1.257 19 C -0.170 4.170 20 O -0.299 6.299 21 C 0.023 3.977 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.303 0.697 31 H 0.024 0.976 32 H 0.032 0.968 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.243 -3.591 1.328 3.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.161 4.161 4 C -0.125 4.125 5 C -0.159 4.159 6 C -0.003 4.003 7 C -0.372 4.372 8 C -0.072 4.072 9 S 0.414 5.586 10 C -0.084 4.084 11 C -0.395 4.395 12 H 0.120 0.880 13 C -0.171 4.171 14 N -0.397 5.397 15 Si 0.763 3.237 16 H -0.183 1.183 17 H -0.196 1.196 18 H -0.181 1.181 19 C -0.220 4.220 20 O -0.215 6.215 21 C -0.073 4.073 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.422 -3.643 -0.373 3.686 hybrid contribution 0.592 0.712 1.263 1.566 sum 0.170 -2.931 0.890 3.068 Atomic orbital electron populations 1.21765 0.95979 1.00373 1.02061 1.20273 0.95202 0.93715 1.01242 1.19212 1.07939 0.95928 0.93013 1.20128 1.01251 0.94819 0.96285 1.20454 1.04587 0.94689 0.96203 1.18054 0.96878 0.92759 0.92596 1.23384 1.13511 0.99661 1.00629 1.20014 0.98630 0.92229 0.96326 1.84789 1.69870 1.01163 1.02796 1.21662 0.95592 0.96998 0.94192 1.19235 1.31197 0.96842 0.92258 0.87952 1.26391 0.93434 1.00927 0.96389 1.68672 1.32134 1.34486 1.04450 0.85759 0.80431 0.79401 0.78067 1.18273 1.19614 1.18144 1.17077 1.26812 0.92367 0.85749 1.86103 1.25698 1.61733 1.47950 1.22893 0.87542 0.99170 0.97663 0.92788 0.93490 0.92895 0.92267 0.92297 0.88132 0.87982 0.88027 0.88337 0.95690 0.94896 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.89 37.16 0.37 -1.59 16 2 C -0.07 -1.00 6.06 -27.88 -0.17 -1.17 16 3 C -0.16 -3.04 5.14 -104.58 -0.54 -3.58 16 4 C -0.10 -2.06 9.60 -40.14 -0.39 -2.45 16 5 C -0.14 -3.12 9.96 -39.04 -0.39 -3.51 16 6 C 0.01 0.13 5.86 -107.03 -0.63 -0.50 16 7 C -0.26 -6.22 6.46 -38.35 -0.25 -6.47 16 8 C -0.05 -1.05 9.71 -39.25 -0.38 -1.43 16 9 S 0.15 3.77 20.10 -107.50 -2.16 1.61 16 10 C 0.04 0.94 6.12 -39.27 -0.24 0.70 16 11 C -0.36 -9.03 9.08 -38.37 -0.35 -9.37 16 12 H 0.10 2.49 7.71 -52.49 -0.40 2.09 16 13 C 0.05 1.14 5.50 -17.27 -0.09 1.05 16 14 N -0.77 -17.72 10.58 55.56 0.59 -17.13 16 15 Si 0.94 16.85 29.56 -169.99 -5.03 11.83 16 16 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 17 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 18 H -0.26 -4.61 7.11 56.52 0.40 -4.20 16 19 C -0.17 -4.45 5.87 -38.98 -0.23 -4.68 16 20 O -0.30 -7.42 10.07 -18.60 -0.19 -7.61 16 21 C 0.02 0.47 11.13 101.05 1.12 1.60 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 26 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 27 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.30 6.21 8.30 -40.82 -0.34 5.87 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 297.21 15.07 4.48 4.48 Total: -1.00 -27.16 297.21 -8.65 -35.81 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.18 Total: 2.43 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: -2.16 Total: -31.41 kcal Atomic # 7 Polarization: -17.72 SS G_CDS: 0.59 Total: -17.13 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.19 Total: -7.61 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.16 Total: 1.61 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.16 -8.65 -35.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307216.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.874 kcal (2) G-P(sol) polarization free energy of solvation -27.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds