Wall clock time and date at job start Mon Mar 30 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46752 * 2 1 4 4 C 1.38882 * 119.90126 * 90.00404 * 3 2 1 5 5 C 1.36016 * 120.59978 * 180.02562 * 4 3 2 6 6 C 1.41738 * 120.50288 * 0.23411 * 5 4 3 7 7 C 1.40127 * 118.64906 * 359.51948 * 6 5 4 8 8 C 1.37710 * 119.90321 * 270.02102 * 3 2 1 9 9 S 1.75973 * 110.13398 * 180.27640 * 7 6 5 10 10 C 1.75433 * 91.91250 * 359.70931 * 9 7 6 11 11 C 1.39651 * 124.84791 * 179.97438 * 10 9 7 12 12 H 1.07993 * 120.00516 * 180.52674 * 11 10 9 13 13 C 1.40055 * 119.99374 * 0.52514 * 11 10 9 14 14 N 1.30894 * 120.00393 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99692 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47292 * 59.99997 * 15 13 11 17 17 H 1.48498 * 109.47316 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47185 * 300.00096 * 15 13 11 19 19 C 1.37634 * 110.31021 * 0.40631 * 10 9 7 20 20 O 1.35633 * 122.63007 * 179.59583 * 19 10 9 21 21 C 1.42898 * 117.00268 * 269.97971 * 20 19 10 22 22 H 1.08996 * 109.47543 * 59.99791 * 1 2 3 23 23 H 1.08999 * 109.46552 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47022 * 299.99558 * 1 2 3 25 25 H 1.08994 * 109.47279 * 240.00426 * 2 1 3 26 26 H 1.08997 * 109.47095 * 119.99580 * 2 1 3 27 27 H 1.07994 * 119.70394 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.74522 * 179.97438 * 5 4 3 29 29 H 1.07994 * 119.84498 * 0.02562 * 8 3 2 30 30 H 0.96998 * 120.00135 * 180.02562 * 14 13 11 31 31 H 1.09006 * 109.46925 * 299.99716 * 21 20 19 32 32 H 1.09002 * 109.47419 * 59.98947 * 21 20 19 33 33 H 1.08997 * 109.47648 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2631 2.0736 1.2039 5 6 2.7159 3.3560 1.2205 6 6 2.9553 4.0502 0.0082 7 6 2.7257 3.3849 -1.2035 8 6 2.2607 2.0683 -1.1938 9 16 3.0999 4.4453 -2.5571 10 6 3.5465 5.7575 -1.4818 11 6 3.9842 7.0166 -1.8982 12 1 4.2477 7.7660 -1.1666 13 6 4.0816 7.3074 -3.2648 14 7 3.7619 6.3993 -4.1516 15 14 4.6678 8.9913 -3.8218 16 1 6.0384 9.2344 -3.3048 17 1 4.6813 9.0448 -5.3058 18 1 3.7490 10.0336 -3.2978 19 6 3.4132 5.3659 -0.1691 20 8 3.7010 6.1865 0.8718 21 6 5.0410 6.1603 1.3673 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0807 1.5585 2.1355 28 1 2.8903 3.8506 2.1647 29 1 2.0786 1.5556 -2.1266 30 1 3.8297 6.6006 -5.0980 31 1 5.2813 5.1545 1.7122 32 1 5.7286 6.4451 0.5709 33 1 5.1356 6.8614 2.1965 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396307216.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:50 Heat of formation + Delta-G solvation = -48.092907 kcal Electronic energy + Delta-G solvation = -17012.480995 eV Core-core repulsion = 14320.660495 eV Total energy + Delta-G solvation = -2691.820500 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39136 -38.73930 -36.33473 -35.34115 -33.03271 -31.35882 -30.23032 -28.02306 -26.68023 -24.51821 -23.42726 -22.18226 -20.88075 -19.80106 -17.78506 -17.61932 -17.00179 -16.07438 -16.03332 -15.86927 -15.14605 -15.00749 -14.50629 -14.34559 -14.09121 -14.04096 -13.68340 -13.34367 -13.02438 -12.93979 -12.72521 -12.55796 -12.07469 -11.94113 -11.82595 -11.72202 -11.56702 -11.03656 -10.89511 -10.37855 -10.10264 -9.15024 -8.96016 -8.20449 -6.51819 0.29535 0.70707 1.23838 1.32266 1.36405 1.49101 1.71488 1.84403 2.11032 2.80325 3.08486 3.72594 4.09347 4.12428 4.38165 4.40279 4.54200 4.64980 4.70341 4.75804 4.78230 4.86045 4.86790 4.94237 5.07002 5.13739 5.28942 5.44277 5.50681 5.51436 5.74401 5.77965 5.92950 6.05384 6.12654 6.42413 6.52656 7.23491 7.89437 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.028046 B = 0.006412 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.104856 B = 4365.898900 C = 5221.810523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.143 4.143 4 C -0.099 4.099 5 C -0.154 4.154 6 C -0.028 4.028 7 C -0.276 4.276 8 C -0.065 4.065 9 S 0.142 5.858 10 C 0.004 3.996 11 C -0.392 4.392 12 H 0.097 0.903 13 C 0.017 3.983 14 N -0.793 5.793 15 Si 1.012 2.988 16 H -0.255 1.255 17 H -0.254 1.254 18 H -0.257 1.257 19 C -0.199 4.199 20 O -0.319 6.319 21 C 0.025 3.975 22 H 0.042 0.958 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.315 0.685 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.506 -4.775 1.623 5.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.145 4.145 4 C -0.119 4.119 5 C -0.174 4.174 6 C -0.036 4.036 7 C -0.391 4.391 8 C -0.087 4.087 9 S 0.401 5.599 10 C -0.116 4.116 11 C -0.425 4.425 12 H 0.115 0.885 13 C -0.202 4.202 14 N -0.419 5.419 15 Si 0.830 3.170 16 H -0.179 1.179 17 H -0.178 1.178 18 H -0.181 1.181 19 C -0.249 4.249 20 O -0.236 6.236 21 C -0.071 4.071 22 H 0.061 0.939 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.156 0.844 28 H 0.124 0.876 29 H 0.137 0.863 30 H 0.129 0.871 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.692 -4.854 -0.072 4.904 hybrid contribution 0.627 0.914 1.271 1.686 sum -0.065 -3.940 1.199 4.119 Atomic orbital electron populations 1.21737 0.94640 1.02133 1.01420 1.20383 0.96194 0.90725 1.03028 1.19788 1.04968 0.97828 0.91921 1.20565 0.99354 0.93821 0.98187 1.20660 1.05354 0.95919 0.95486 1.18336 0.98240 0.92949 0.94033 1.23646 1.14463 1.00885 1.00074 1.20357 0.98824 0.91374 0.98172 1.84466 1.70562 1.01406 1.03446 1.22001 0.96752 0.98062 0.94812 1.19445 1.32769 0.96648 0.93670 0.88548 1.27304 0.92771 1.04731 0.95428 1.68685 1.31799 1.36141 1.05249 0.84751 0.79767 0.74147 0.78376 1.17854 1.17766 1.18077 1.17380 1.28202 0.93214 0.86071 1.85991 1.27843 1.61946 1.47814 1.23011 0.85552 1.00238 0.98257 0.93882 0.90586 0.93164 0.91013 0.90079 0.84433 0.87626 0.86295 0.87129 0.95588 0.95777 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.89 71.98 0.71 -2.60 16 2 C -0.07 -1.71 6.06 29.85 0.18 -1.53 16 3 C -0.14 -5.13 5.14 -19.84 -0.10 -5.23 16 4 C -0.10 -3.70 9.60 21.91 0.21 -3.49 16 5 C -0.15 -6.88 9.96 22.62 0.23 -6.66 16 6 C -0.03 -1.45 5.86 -21.42 -0.13 -1.57 16 7 C -0.28 -13.64 6.46 23.07 0.15 -13.49 16 8 C -0.06 -2.70 9.71 22.48 0.22 -2.48 16 9 S 0.14 7.23 20.10 -56.49 -1.14 6.09 16 10 C 0.00 0.19 6.12 22.47 0.14 0.33 16 11 C -0.39 -20.39 9.08 23.05 0.21 -20.18 16 12 H 0.10 4.93 7.71 -2.91 -0.02 4.90 16 13 C 0.02 0.79 5.50 85.27 0.47 1.25 16 14 N -0.79 -37.01 10.58 21.86 0.23 -36.78 16 15 Si 1.01 34.26 29.56 68.60 2.03 36.29 16 16 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 17 H -0.25 -7.82 7.11 99.48 0.71 -7.11 16 18 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 19 C -0.20 -10.87 5.87 22.66 0.13 -10.73 16 20 O -0.32 -16.44 10.07 -89.46 -0.90 -17.34 16 21 C 0.02 1.03 11.13 113.37 1.26 2.29 16 22 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 26 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 27 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 28 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 29 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 30 H 0.31 12.87 8.30 -92.71 -0.77 12.10 16 31 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -61.13 297.21 5.01 -56.13 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 1.10 Total: 19.72 kcal Atomic # 6 Polarization: -67.78 SS G_CDS: 3.68 Total: -64.10 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.23 Total: -36.78 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.90 Total: -17.34 kcal Atomic # 14 Polarization: 34.26 SS G_CDS: 2.03 Total: 36.29 kcal Atomic # 16 Polarization: 7.23 SS G_CDS: -1.14 Total: 6.09 kcal Total: -61.13 5.01 -56.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307216.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.033 kcal (2) G-P(sol) polarization free energy of solvation -61.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds