Wall clock time and date at job start Mon Mar 30 2020 06:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47158 * 2 1 4 4 C 1.38617 * 119.93689 * 94.59438 * 3 2 1 5 5 C 1.37427 * 120.31100 * 180.02562 * 4 3 2 6 6 C 1.40705 * 120.42608 * 0.02562 * 5 4 3 7 7 C 1.46638 * 129.48432 * 179.97438 * 6 5 4 8 8 C 1.40812 * 123.30590 * 0.04728 * 7 6 5 9 9 H 1.07993 * 119.99627 * 22.32226 * 8 7 6 10 10 C 1.39697 * 119.99894 * 202.31965 * 8 7 6 11 11 N 1.31088 * 120.00349 * 10.73520 * 10 8 7 12 12 Si 1.86803 * 119.99760 * 190.73590 * 10 8 7 13 13 H 1.48500 * 109.47314 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47298 * 120.00066 * 12 10 8 15 15 H 1.48502 * 109.47086 * 239.99751 * 12 10 8 16 16 C 1.36460 * 113.39621 * 180.02562 * 7 6 5 17 17 S 1.69988 * 111.92572 * 0.02562 * 16 7 6 18 18 C 1.39200 * 119.27118 * 359.97438 * 6 5 4 19 19 C 1.38100 * 119.93753 * 274.35908 * 3 2 1 20 20 O 1.35913 * 119.86642 * 359.94711 * 19 3 2 21 21 C 1.42907 * 116.99937 * 264.35810 * 20 19 3 22 22 H 1.09001 * 109.46991 * 64.97329 * 1 2 3 23 23 H 1.08996 * 109.47343 * 184.97191 * 1 2 3 24 24 H 1.09005 * 109.46980 * 304.97907 * 1 2 3 25 25 H 1.08998 * 109.47398 * 239.99688 * 2 1 3 26 26 H 1.09004 * 109.46953 * 119.99771 * 2 1 3 27 27 H 1.07997 * 119.84851 * 0.04027 * 4 3 2 28 28 H 1.08001 * 119.78280 * 179.97438 * 5 4 3 29 29 H 0.96998 * 119.99731 * 180.02562 * 11 10 8 30 30 H 1.07995 * 124.03999 * 179.97438 * 16 7 6 31 31 H 1.09000 * 109.47294 * 184.76348 * 21 20 19 32 32 H 1.08999 * 109.47265 * 304.76532 * 21 20 19 33 33 H 1.09000 * 109.46789 * 64.76336 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3537 2.0409 1.1974 5 6 2.8119 3.3365 1.2063 6 6 2.9598 4.0484 0.0017 7 6 3.4251 5.4214 -0.2189 8 6 3.8188 6.2814 0.8243 9 1 4.1341 5.8712 1.7722 10 6 3.8016 7.6651 0.6329 11 7 3.2259 8.1727 -0.4298 12 14 4.5991 8.7920 1.8914 13 1 5.1748 7.9770 2.9912 14 1 5.6778 9.5772 1.2395 15 1 3.5780 9.7177 2.4442 16 6 3.4396 5.7838 -1.5344 17 16 2.9077 4.5251 -2.5455 18 6 2.6372 3.4259 -1.2008 19 6 2.1763 2.1009 -1.1933 20 8 1.8653 1.4858 -2.3647 21 6 2.9399 0.8756 -3.0823 22 1 -0.3633 0.4347 -0.9312 23 1 -0.3634 -1.0237 0.0891 24 1 -0.3633 0.5892 0.8421 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2436 1.5034 2.1276 28 1 3.0594 3.8115 2.1442 29 1 3.2144 9.1335 -0.5627 30 1 3.7510 6.7547 -1.8905 31 1 2.5713 0.4962 -4.0353 32 1 3.7215 1.6135 -3.2629 33 1 3.3467 0.0516 -2.4960 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396307242.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:28 Heat of formation + Delta-G solvation = -18.148141 kcal Electronic energy + Delta-G solvation = -17173.334157 eV Core-core repulsion = 14482.812159 eV Total energy + Delta-G solvation = -2690.521998 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49645 -37.10823 -35.20240 -33.39100 -31.39624 -29.54165 -27.69665 -26.59066 -25.80729 -23.38970 -21.91845 -20.77678 -19.60816 -17.42350 -16.52022 -15.90232 -15.48605 -15.22218 -14.88615 -14.06812 -13.75286 -13.58972 -13.38790 -12.89849 -12.70396 -12.32586 -11.88484 -11.72310 -11.49414 -11.24487 -11.17476 -10.89379 -10.83526 -10.55930 -10.43456 -10.04277 -9.90310 -9.57720 -9.32094 -9.16982 -8.29320 -7.35236 -6.70201 -6.59765 -4.30176 1.71741 1.92569 2.84513 2.95617 3.09465 3.14164 3.61022 3.83093 4.00071 4.16096 4.51795 5.15917 5.26820 5.30635 5.51904 5.59085 5.63652 5.69142 5.81047 5.83596 5.93247 6.00908 6.18661 6.21063 6.33483 6.47495 6.66064 6.96926 7.01093 7.13789 7.20040 7.37696 7.72356 7.96950 8.04581 8.48102 8.78854 8.89944 10.30352 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.006357 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.639569 B = 4403.721810 C = 5138.133725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 C -0.106 4.106 4 C -0.132 4.132 5 C -0.076 4.076 6 C -0.054 4.054 7 C 0.075 3.925 8 C -0.433 4.433 9 H 0.075 0.925 10 C 0.067 3.933 11 N -0.802 5.802 12 Si 0.913 3.087 13 H -0.262 1.262 14 H -0.274 1.274 15 H -0.276 1.276 16 C -0.350 4.350 17 S 0.050 5.950 18 C -0.160 4.160 19 C 0.112 3.888 20 O -0.332 6.332 21 C 0.034 3.966 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.276 0.724 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 -10.798 -0.087 10.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.108 4.108 4 C -0.154 4.154 5 C -0.096 4.096 6 C -0.064 4.064 7 C 0.066 3.934 8 C -0.466 4.466 9 H 0.093 0.907 10 C -0.148 4.148 11 N -0.429 5.429 12 Si 0.738 3.262 13 H -0.186 1.186 14 H -0.199 1.199 15 H -0.201 1.201 16 C -0.486 4.486 17 S 0.314 5.686 18 C -0.276 4.276 19 C 0.063 3.937 20 O -0.249 6.249 21 C -0.061 4.061 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.087 0.913 30 H 0.181 0.819 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.202 -10.550 -1.860 10.780 hybrid contribution 0.725 0.991 2.115 2.445 sum -0.477 -9.559 0.255 9.574 Atomic orbital electron populations 1.21708 0.95057 1.00754 1.02472 1.20288 0.96044 0.92616 1.01691 1.19653 1.02850 0.96113 0.92220 1.20504 1.03265 0.95189 0.96465 1.20902 0.98212 0.93373 0.97079 1.19687 0.99668 0.95475 0.91600 1.17352 0.94617 0.88251 0.93166 1.18956 1.38572 0.90297 0.98807 0.90667 1.25775 0.93737 0.98959 0.96374 1.69864 1.33152 1.13609 1.26296 0.86186 0.79423 0.79835 0.80797 1.18589 1.19935 1.20109 1.24496 1.24727 1.04059 0.95319 1.81949 1.71355 1.05146 1.10143 1.23024 1.07618 0.97653 0.99295 1.17698 1.02175 0.88849 0.84939 1.86007 1.33295 1.72166 1.33461 1.22898 0.90755 0.96649 0.95804 0.92217 0.93146 0.92775 0.91661 0.91760 0.86405 0.86111 0.91299 0.81891 0.89492 0.93419 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 37.16 0.37 -1.48 16 2 C -0.07 -0.96 5.78 -27.88 -0.16 -1.12 16 3 C -0.11 -1.87 5.14 -104.53 -0.54 -2.41 16 4 C -0.13 -2.35 9.65 -39.74 -0.38 -2.73 16 5 C -0.08 -1.57 9.86 -38.95 -0.38 -1.96 16 6 C -0.05 -1.30 6.02 -105.22 -0.63 -1.93 16 7 C 0.07 2.01 5.69 -106.18 -0.60 1.40 16 8 C -0.43 -11.53 9.07 -38.06 -0.35 -11.87 16 9 H 0.08 1.90 7.69 -52.49 -0.40 1.49 16 10 C 0.07 1.71 5.36 -17.32 -0.09 1.62 16 11 N -0.80 -21.31 10.77 55.54 0.60 -20.71 16 12 Si 0.91 19.05 29.57 -169.99 -5.03 14.03 16 13 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 14 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 15 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 16 C -0.35 -9.32 9.52 30.09 0.29 -9.03 16 17 S 0.05 1.15 22.93 -107.50 -2.46 -1.31 16 18 C -0.16 -3.68 6.39 -38.46 -0.25 -3.93 16 19 C 0.11 2.25 5.72 -38.86 -0.22 2.03 16 20 O -0.33 -6.07 9.52 -19.47 -0.19 -6.25 16 21 C 0.03 0.49 10.92 101.05 1.10 1.59 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.88 6.91 -51.93 -0.36 0.52 16 26 H 0.06 0.77 8.05 -51.93 -0.42 0.36 16 27 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.12 2.34 7.88 -52.49 -0.41 1.92 16 29 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 30 H 0.16 4.58 6.24 -52.49 -0.33 4.25 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.52 7.61 -51.93 -0.40 0.12 16 LS Contribution 294.58 15.07 4.44 4.44 Total: -1.00 -28.64 294.58 -8.48 -37.12 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.99 Total: 2.51 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: -1.85 Total: -29.82 kcal Atomic # 7 Polarization: -21.31 SS G_CDS: 0.60 Total: -20.71 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.19 Total: -6.25 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.03 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.46 Total: -1.31 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.64 -8.48 -37.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307242.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.970 kcal (2) G-P(sol) polarization free energy of solvation -28.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds