Wall clock time and date at job start Mon Mar 30 2020 06:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47158 * 2 1 4 4 C 1.38617 * 119.93689 * 94.59438 * 3 2 1 5 5 C 1.37427 * 120.31100 * 180.02562 * 4 3 2 6 6 C 1.40705 * 120.42608 * 0.02562 * 5 4 3 7 7 C 1.46638 * 129.48432 * 179.97438 * 6 5 4 8 8 C 1.40812 * 123.30590 * 0.04728 * 7 6 5 9 9 H 1.07993 * 119.99627 * 22.32226 * 8 7 6 10 10 C 1.39697 * 119.99894 * 202.31965 * 8 7 6 11 11 N 1.31088 * 120.00349 * 10.73520 * 10 8 7 12 12 Si 1.86803 * 119.99760 * 190.73590 * 10 8 7 13 13 H 1.48500 * 109.47314 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47298 * 120.00066 * 12 10 8 15 15 H 1.48502 * 109.47086 * 239.99751 * 12 10 8 16 16 C 1.36460 * 113.39621 * 180.02562 * 7 6 5 17 17 S 1.69988 * 111.92572 * 0.02562 * 16 7 6 18 18 C 1.39200 * 119.27118 * 359.97438 * 6 5 4 19 19 C 1.38100 * 119.93753 * 274.35908 * 3 2 1 20 20 O 1.35913 * 119.86642 * 359.94711 * 19 3 2 21 21 C 1.42907 * 116.99937 * 264.35810 * 20 19 3 22 22 H 1.09001 * 109.46991 * 64.97329 * 1 2 3 23 23 H 1.08996 * 109.47343 * 184.97191 * 1 2 3 24 24 H 1.09005 * 109.46980 * 304.97907 * 1 2 3 25 25 H 1.08998 * 109.47398 * 239.99688 * 2 1 3 26 26 H 1.09004 * 109.46953 * 119.99771 * 2 1 3 27 27 H 1.07997 * 119.84851 * 0.04027 * 4 3 2 28 28 H 1.08001 * 119.78280 * 179.97438 * 5 4 3 29 29 H 0.96998 * 119.99731 * 180.02562 * 11 10 8 30 30 H 1.07995 * 124.03999 * 179.97438 * 16 7 6 31 31 H 1.09000 * 109.47294 * 184.76348 * 21 20 19 32 32 H 1.08999 * 109.47265 * 304.76532 * 21 20 19 33 33 H 1.09000 * 109.46789 * 64.76336 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3537 2.0409 1.1974 5 6 2.8119 3.3365 1.2063 6 6 2.9598 4.0484 0.0017 7 6 3.4251 5.4214 -0.2189 8 6 3.8188 6.2814 0.8243 9 1 4.1341 5.8712 1.7722 10 6 3.8016 7.6651 0.6329 11 7 3.2259 8.1727 -0.4298 12 14 4.5991 8.7920 1.8914 13 1 5.1748 7.9770 2.9912 14 1 5.6778 9.5772 1.2395 15 1 3.5780 9.7177 2.4442 16 6 3.4396 5.7838 -1.5344 17 16 2.9077 4.5251 -2.5455 18 6 2.6372 3.4259 -1.2008 19 6 2.1763 2.1009 -1.1933 20 8 1.8653 1.4858 -2.3647 21 6 2.9399 0.8756 -3.0823 22 1 -0.3633 0.4347 -0.9312 23 1 -0.3634 -1.0237 0.0891 24 1 -0.3633 0.5892 0.8421 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2436 1.5034 2.1276 28 1 3.0594 3.8115 2.1442 29 1 3.2144 9.1335 -0.5627 30 1 3.7510 6.7547 -1.8905 31 1 2.5713 0.4962 -4.0353 32 1 3.7215 1.6135 -3.2629 33 1 3.3467 0.0516 -2.4960 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396307242.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:28 Heat of formation + Delta-G solvation = -33.218350 kcal Electronic energy + Delta-G solvation = -17173.987650 eV Core-core repulsion = 14482.812159 eV Total energy + Delta-G solvation = -2691.175491 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.00023 -38.66978 -36.82460 -35.00683 -32.97702 -31.11061 -29.24988 -28.05874 -27.50192 -24.79921 -23.44164 -22.31045 -21.32152 -19.06289 -18.36286 -17.47016 -17.00786 -16.77229 -16.41272 -15.51741 -15.22241 -15.07680 -14.71481 -14.33598 -14.22158 -13.83897 -13.33917 -13.25683 -13.05330 -12.81545 -12.75648 -12.48951 -12.23395 -11.99897 -11.89797 -11.58334 -11.54136 -11.25647 -11.07254 -10.84336 -9.97454 -9.08050 -8.60243 -8.42398 -6.30828 0.10803 0.32338 1.11575 1.27337 1.37053 1.52524 1.85797 1.95611 2.22080 2.58689 2.97566 3.35897 3.88619 4.04283 4.28556 4.37987 4.48865 4.49436 4.58290 4.58911 4.64043 4.73610 4.80221 5.07759 5.11119 5.19037 5.20330 5.32416 5.46094 5.51338 5.62416 5.66421 5.94088 5.97318 6.49880 6.60276 6.81574 6.93023 8.39988 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.006357 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.639569 B = 4403.721810 C = 5138.133725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.095 4.095 4 C -0.113 4.113 5 C -0.091 4.091 6 C -0.090 4.090 7 C 0.053 3.947 8 C -0.464 4.464 9 H 0.080 0.920 10 C 0.021 3.979 11 N -0.837 5.837 12 Si 0.990 3.010 13 H -0.253 1.253 14 H -0.269 1.269 15 H -0.268 1.268 16 C -0.388 4.388 17 S 0.058 5.942 18 C -0.177 4.177 19 C 0.106 3.894 20 O -0.342 6.342 21 C 0.028 3.972 22 H 0.039 0.961 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.163 0.837 28 H 0.128 0.872 29 H 0.282 0.718 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.032 0.968 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 -13.421 1.635 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 C -0.098 4.098 4 C -0.134 4.134 5 C -0.111 4.111 6 C -0.100 4.100 7 C 0.043 3.957 8 C -0.496 4.496 9 H 0.099 0.901 10 C -0.191 4.191 11 N -0.464 5.464 12 Si 0.811 3.189 13 H -0.176 1.176 14 H -0.194 1.194 15 H -0.193 1.193 16 C -0.523 4.523 17 S 0.321 5.679 18 C -0.293 4.293 19 C 0.057 3.943 20 O -0.259 6.259 21 C -0.066 4.066 22 H 0.059 0.941 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.181 0.819 28 H 0.146 0.854 29 H 0.093 0.907 30 H 0.155 0.845 31 H 0.136 0.864 32 H 0.050 0.950 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.549 -13.200 -0.146 13.291 hybrid contribution 0.769 1.617 1.559 2.374 sum -0.781 -11.583 1.413 11.695 Atomic orbital electron populations 1.21689 0.94238 1.02465 1.01369 1.20427 0.96547 0.89818 1.03655 1.20215 1.00501 0.97976 0.91115 1.20994 1.00294 0.93795 0.98351 1.21120 0.99103 0.94713 0.96137 1.19824 1.01687 0.94930 0.93578 1.17833 0.94358 0.90070 0.93400 1.19311 1.39760 0.91377 0.99192 0.90141 1.26782 0.93612 1.00244 0.98456 1.69981 1.33970 1.14310 1.28164 0.85030 0.78378 0.77450 0.78052 1.17611 1.19379 1.19257 1.24345 1.27064 1.04400 0.96529 1.81521 1.72077 1.04419 1.09918 1.23307 1.08597 0.98946 0.98458 1.17925 1.01713 0.88028 0.86665 1.85975 1.34742 1.72110 1.33116 1.23167 0.89782 0.96547 0.97128 0.94138 0.90203 0.92996 0.90827 0.88722 0.81922 0.85413 0.90722 0.84496 0.86426 0.94963 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.89 71.98 0.71 -2.36 16 2 C -0.07 -1.55 5.78 29.85 0.17 -1.38 16 3 C -0.10 -3.08 5.14 -19.81 -0.10 -3.18 16 4 C -0.11 -3.65 9.65 22.17 0.21 -3.43 16 5 C -0.09 -3.71 9.86 22.68 0.22 -3.48 16 6 C -0.09 -4.49 6.02 -20.25 -0.12 -4.61 16 7 C 0.05 2.97 5.69 -20.87 -0.12 2.85 16 8 C -0.46 -25.64 9.07 23.25 0.21 -25.43 16 9 H 0.08 4.18 7.69 -2.91 -0.02 4.15 16 10 C 0.02 1.12 5.36 85.16 0.46 1.58 16 11 N -0.84 -46.52 10.77 21.80 0.23 -46.29 16 12 Si 0.99 39.65 29.57 68.60 2.03 41.68 16 13 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 14 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 15 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 16 C -0.39 -22.03 9.52 67.40 0.64 -21.39 16 17 S 0.06 2.79 22.93 -56.49 -1.30 1.50 16 18 C -0.18 -8.31 6.39 23.00 0.15 -8.17 16 19 C 0.11 4.13 5.72 22.73 0.13 4.26 16 20 O -0.34 -11.93 9.52 -92.57 -0.88 -12.81 16 21 C 0.03 0.74 10.92 113.37 1.24 1.98 16 22 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.07 1.62 6.91 -2.39 -0.02 1.61 16 26 H 0.09 1.68 8.05 -2.38 -0.02 1.66 16 27 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 28 H 0.13 4.88 7.88 -2.91 -0.02 4.86 16 29 H 0.28 14.25 8.30 -92.71 -0.77 13.48 16 30 H 0.14 8.33 6.24 -2.91 -0.02 8.32 16 31 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.37 7.61 -2.39 -0.02 1.36 16 Total: -1.00 -66.05 294.58 5.00 -61.05 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 1.11 Total: 17.65 kcal Atomic # 6 Polarization: -66.58 SS G_CDS: 3.80 Total: -62.78 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.23 Total: -46.29 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.88 Total: -12.81 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.30 Total: 1.50 kcal Total: -66.05 5.00 -61.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307242.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.831 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds