Wall clock time and date at job start Mon Mar 30 2020 06:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46696 * 2 1 4 4 C 1.38207 * 119.45180 * 90.00196 * 3 2 1 5 5 C 1.39550 * 121.45896 * 180.02562 * 4 3 2 6 6 S 1.76061 * 130.56395 * 180.02562 * 5 4 3 7 7 C 1.75492 * 91.57584 * 179.78810 * 6 5 4 8 8 C 1.33183 * 110.66825 * 0.33976 * 7 6 5 9 9 O 1.36115 * 122.16468 * 179.86109 * 8 7 6 10 10 C 1.42898 * 117.00150 * 359.70857 * 9 8 7 11 11 C 1.39819 * 120.04852 * 359.97438 * 5 4 3 12 12 C 1.47801 * 118.08269 * 0.02562 * 11 5 4 13 13 C 1.40556 * 120.41194 * 180.02562 * 12 11 5 14 14 H 1.08002 * 119.99761 * 332.98027 * 13 12 11 15 15 C 1.39918 * 120.00159 * 152.97643 * 13 12 11 16 16 N 1.30877 * 120.00137 * 344.00650 * 15 13 12 17 17 Si 1.86800 * 119.99781 * 164.01318 * 15 13 12 18 18 H 1.48500 * 109.47197 * 90.00169 * 17 15 13 19 19 H 1.48507 * 109.46701 * 209.99653 * 17 15 13 20 20 H 1.48490 * 109.47405 * 329.99507 * 17 15 13 21 21 C 1.37566 * 119.45521 * 270.02089 * 3 2 1 22 22 H 1.08994 * 109.47532 * 299.99903 * 1 2 3 23 23 H 1.09004 * 109.47004 * 60.00252 * 1 2 3 24 24 H 1.09004 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47417 * 240.00603 * 2 1 3 26 26 H 1.08994 * 109.47135 * 119.99691 * 2 1 3 27 27 H 1.08003 * 119.26816 * 0.03644 * 4 3 2 28 28 H 1.08005 * 124.66696 * 180.23018 * 7 6 5 29 29 H 1.08995 * 109.46881 * 179.97438 * 10 9 8 30 30 H 1.09001 * 109.46853 * 300.00192 * 10 9 8 31 31 H 1.08995 * 109.46997 * 60.00014 * 10 9 8 32 32 H 0.96996 * 120.00130 * 180.02562 * 16 15 13 33 33 H 1.08005 * 119.93374 * 359.97437 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2588 2.0616 1.2035 5 6 2.7231 3.3767 1.2523 6 16 3.0893 4.4111 2.6291 7 6 3.5613 5.7312 1.5734 8 6 3.4308 5.3806 0.2952 9 8 3.7310 6.2315 -0.7238 10 6 4.1920 7.5357 -0.3655 11 6 2.9703 4.0763 0.0673 12 6 2.7250 3.3825 -1.2145 13 6 2.9577 4.0395 -2.4350 14 1 2.8879 5.1158 -2.4909 15 6 3.2799 3.2991 -3.5777 16 7 3.6705 2.0553 -3.4630 17 14 3.1528 4.0861 -5.2671 18 1 4.4489 4.7212 -5.6162 19 1 2.8243 3.0455 -6.2744 20 1 2.0841 5.1170 -5.2538 21 6 2.2573 2.0588 -1.1978 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0725 1.5326 2.1265 28 1 3.9082 6.6958 1.9135 29 1 4.3951 8.1103 -1.2692 30 1 3.4274 8.0423 0.2234 31 1 5.1056 7.4493 0.2226 32 1 3.8942 1.5421 -4.2551 33 1 2.0741 1.5403 -2.1274 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396307264.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:53 Heat of formation + Delta-G solvation = -15.641204 kcal Electronic energy + Delta-G solvation = -17315.576078 eV Core-core repulsion = 14625.162789 eV Total energy + Delta-G solvation = -2690.413289 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.00602 -37.37648 -34.26615 -34.05546 -31.12749 -29.69968 -27.49643 -26.94663 -25.28578 -23.05196 -21.64872 -20.47573 -19.09899 -17.62015 -16.41644 -15.89979 -15.20792 -15.01691 -14.90072 -14.15383 -13.70360 -13.29668 -12.99943 -12.82172 -12.43417 -12.12314 -11.72241 -11.66671 -11.45176 -11.28214 -11.12905 -10.89147 -10.66049 -10.54080 -10.37545 -10.26410 -9.67871 -9.56000 -9.43136 -9.14824 -7.92828 -7.22627 -6.99904 -6.50101 -4.46942 1.93764 2.67835 2.71207 2.95937 3.00402 3.09147 3.12171 3.61363 3.76631 4.20092 4.39854 5.38217 5.56075 5.62290 5.65226 5.70696 5.80612 5.92705 6.04474 6.29303 6.37432 6.40272 6.44471 6.51254 6.75656 6.79929 6.92080 6.99960 7.07418 7.30504 7.53543 7.80102 7.91786 8.04685 8.22077 8.43217 8.62331 8.74596 9.88172 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.010796 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.449993 B = 2592.820140 C = 4513.997911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 C -0.025 4.025 4 C -0.230 4.230 5 C -0.045 4.045 6 S 0.006 5.994 7 C -0.395 4.395 8 C 0.192 3.808 9 O -0.292 6.292 10 C 0.029 3.971 11 C -0.211 4.211 12 C 0.162 3.838 13 C -0.411 4.411 14 H 0.097 0.903 15 C 0.071 3.929 16 N -0.767 5.767 17 Si 0.916 3.084 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.256 1.256 21 C -0.184 4.184 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.287 0.713 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 1.939 1.684 2.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.027 4.027 4 C -0.256 4.256 5 C -0.160 4.160 6 S 0.264 5.736 7 C -0.529 4.529 8 C 0.137 3.863 9 O -0.205 6.205 10 C -0.067 4.067 11 C -0.217 4.217 12 C 0.157 3.843 13 C -0.438 4.438 14 H 0.115 0.885 15 C -0.151 4.151 16 N -0.390 5.390 17 Si 0.739 3.261 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.180 1.180 21 C -0.206 4.206 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.163 0.837 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.353 1.664 2.865 3.579 hybrid contribution 0.325 0.782 -1.880 2.062 sum -1.028 2.446 0.985 2.830 Atomic orbital electron populations 1.21704 0.95785 1.00293 1.02056 1.20473 0.95322 0.94413 1.01472 1.19255 0.96408 0.94013 0.93072 1.19304 1.16765 0.93225 0.96291 1.21898 1.02775 0.97548 0.93775 1.83226 1.74031 1.06584 1.09773 1.24048 1.28927 1.04710 0.95175 1.17619 0.93682 0.89256 0.85737 1.86269 1.80299 1.22750 1.31212 1.22897 0.98448 0.83797 1.01581 1.18367 1.16679 0.92610 0.94077 1.18385 0.85758 0.90878 0.89306 1.19839 1.35803 0.96204 0.91941 0.88467 1.26135 0.92258 0.94556 1.02123 1.69860 1.27362 1.08978 1.32754 0.86166 0.80145 0.80026 0.79758 1.19074 1.19799 1.17996 1.20900 1.07346 0.96124 0.96191 0.92919 0.92654 0.93567 0.91651 0.92340 0.88904 0.83746 0.89215 0.93579 0.93547 0.90194 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 37.16 0.37 -1.88 16 2 C -0.08 -1.44 6.03 -27.88 -0.17 -1.61 16 3 C -0.02 -0.55 5.11 -104.88 -0.54 -1.09 16 4 C -0.23 -5.28 9.64 -39.10 -0.38 -5.66 16 5 C -0.05 -1.10 6.48 -38.50 -0.25 -1.35 16 6 S 0.01 0.14 23.29 -107.50 -2.50 -2.37 16 7 C -0.40 -8.41 9.99 28.97 0.29 -8.12 16 8 C 0.19 4.54 6.64 -40.62 -0.27 4.27 16 9 O -0.29 -6.43 8.38 -20.11 -0.17 -6.59 16 10 C 0.03 0.45 9.91 101.05 1.00 1.46 16 11 C -0.21 -5.45 6.03 -104.67 -0.63 -6.08 16 12 C 0.16 4.30 5.73 -104.30 -0.60 3.70 16 13 C -0.41 -10.57 8.50 -38.08 -0.32 -10.90 16 14 H 0.10 2.48 6.32 -52.49 -0.33 2.15 16 15 C 0.07 1.68 5.15 -17.33 -0.09 1.59 16 16 N -0.77 -18.57 11.01 55.55 0.61 -17.96 16 17 Si 0.92 17.73 29.59 -169.99 -5.03 12.70 16 18 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 21 C -0.18 -4.60 8.26 -39.01 -0.32 -4.92 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 26 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 27 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 28 H 0.14 2.65 6.90 -52.48 -0.36 2.29 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.67 7.83 -51.93 -0.41 0.26 16 31 H 0.05 0.68 7.81 -51.93 -0.41 0.28 16 32 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 33 H 0.12 3.08 6.26 -52.48 -0.33 2.75 16 LS Contribution 291.13 15.07 4.39 4.39 Total: -1.00 -27.54 291.13 -8.53 -36.07 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.92 Total: 4.34 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: -1.90 Total: -30.57 kcal Atomic # 7 Polarization: -18.57 SS G_CDS: 0.61 Total: -17.96 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.17 Total: -6.59 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.50 Total: -2.37 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.54 -8.53 -36.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307264.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.427 kcal (2) G-P(sol) polarization free energy of solvation -27.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds