Wall clock time and date at job start Mon Mar 30 2020 06:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46696 * 2 1 4 4 C 1.38207 * 119.45180 * 90.00196 * 3 2 1 5 5 C 1.39550 * 121.45896 * 180.02562 * 4 3 2 6 6 S 1.76061 * 130.56395 * 180.02562 * 5 4 3 7 7 C 1.75492 * 91.57584 * 179.78810 * 6 5 4 8 8 C 1.33183 * 110.66825 * 0.33976 * 7 6 5 9 9 O 1.36115 * 122.16468 * 179.86109 * 8 7 6 10 10 C 1.42898 * 117.00150 * 359.70857 * 9 8 7 11 11 C 1.39819 * 120.04852 * 359.97438 * 5 4 3 12 12 C 1.47801 * 118.08269 * 0.02562 * 11 5 4 13 13 C 1.40556 * 120.41194 * 180.02562 * 12 11 5 14 14 H 1.08002 * 119.99761 * 332.98027 * 13 12 11 15 15 C 1.39918 * 120.00159 * 152.97643 * 13 12 11 16 16 N 1.30877 * 120.00137 * 344.00650 * 15 13 12 17 17 Si 1.86800 * 119.99781 * 164.01318 * 15 13 12 18 18 H 1.48500 * 109.47197 * 90.00169 * 17 15 13 19 19 H 1.48507 * 109.46701 * 209.99653 * 17 15 13 20 20 H 1.48490 * 109.47405 * 329.99507 * 17 15 13 21 21 C 1.37566 * 119.45521 * 270.02089 * 3 2 1 22 22 H 1.08994 * 109.47532 * 299.99903 * 1 2 3 23 23 H 1.09004 * 109.47004 * 60.00252 * 1 2 3 24 24 H 1.09004 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47417 * 240.00603 * 2 1 3 26 26 H 1.08994 * 109.47135 * 119.99691 * 2 1 3 27 27 H 1.08003 * 119.26816 * 0.03644 * 4 3 2 28 28 H 1.08005 * 124.66696 * 180.23018 * 7 6 5 29 29 H 1.08995 * 109.46881 * 179.97438 * 10 9 8 30 30 H 1.09001 * 109.46853 * 300.00192 * 10 9 8 31 31 H 1.08995 * 109.46997 * 60.00014 * 10 9 8 32 32 H 0.96996 * 120.00130 * 180.02562 * 16 15 13 33 33 H 1.08005 * 119.93374 * 359.97437 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2588 2.0616 1.2035 5 6 2.7231 3.3767 1.2523 6 16 3.0893 4.4111 2.6291 7 6 3.5613 5.7312 1.5734 8 6 3.4308 5.3806 0.2952 9 8 3.7310 6.2315 -0.7238 10 6 4.1920 7.5357 -0.3655 11 6 2.9703 4.0763 0.0673 12 6 2.7250 3.3825 -1.2145 13 6 2.9577 4.0395 -2.4350 14 1 2.8879 5.1158 -2.4909 15 6 3.2799 3.2991 -3.5777 16 7 3.6705 2.0553 -3.4630 17 14 3.1528 4.0861 -5.2671 18 1 4.4489 4.7212 -5.6162 19 1 2.8243 3.0455 -6.2744 20 1 2.0841 5.1170 -5.2538 21 6 2.2573 2.0588 -1.1978 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0725 1.5326 2.1265 28 1 3.9082 6.6958 1.9135 29 1 4.3951 8.1103 -1.2692 30 1 3.4274 8.0423 0.2234 31 1 5.1056 7.4493 0.2226 32 1 3.8942 1.5421 -4.2551 33 1 2.0741 1.5403 -2.1274 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396307264.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:52 Heat of formation + Delta-G solvation = -29.226395 kcal Electronic energy + Delta-G solvation = -17316.165176 eV Core-core repulsion = 14625.162789 eV Total energy + Delta-G solvation = -2691.002387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68051 -39.06363 -36.00415 -35.72073 -32.74801 -31.47757 -29.15934 -28.32866 -27.08896 -24.59086 -23.39179 -22.15071 -20.81206 -19.38667 -18.16130 -17.54895 -16.88608 -16.56701 -16.51067 -15.78638 -15.31191 -14.85910 -14.56740 -14.35518 -14.08268 -13.68122 -13.35188 -13.22763 -13.07938 -12.89003 -12.65459 -12.48670 -12.17485 -12.07034 -11.94945 -11.75586 -11.39309 -11.27765 -11.19209 -10.85766 -9.73373 -9.00582 -8.76494 -8.22473 -6.34265 0.16042 0.90184 0.98189 1.35486 1.37556 1.46947 1.53178 1.83394 2.15788 2.59646 2.72851 3.55257 4.12311 4.22948 4.31535 4.34582 4.42200 4.62217 4.64307 4.69643 4.74621 4.89518 4.99665 5.03048 5.09506 5.15171 5.24350 5.33147 5.44935 5.53007 5.73094 5.95867 6.12325 6.22270 6.56573 6.60483 6.79196 6.90662 8.15414 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.010796 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.449993 B = 2592.820140 C = 4513.997911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C -0.025 4.025 4 C -0.238 4.238 5 C -0.075 4.075 6 S 0.054 5.946 7 C -0.385 4.385 8 C 0.167 3.833 9 O -0.319 6.319 10 C 0.019 3.981 11 C -0.244 4.244 12 C 0.131 3.869 13 C -0.443 4.443 14 H 0.088 0.912 15 C 0.035 3.965 16 N -0.796 5.796 17 Si 0.985 3.015 18 H -0.261 1.261 19 H -0.259 1.259 20 H -0.258 1.258 21 C -0.209 4.209 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.176 0.824 29 H 0.115 0.885 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.296 0.704 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 2.324 2.266 3.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.028 4.028 4 C -0.264 4.264 5 C -0.190 4.190 6 S 0.312 5.688 7 C -0.518 4.518 8 C 0.112 3.888 9 O -0.233 6.233 10 C -0.075 4.075 11 C -0.250 4.250 12 C 0.126 3.874 13 C -0.470 4.470 14 H 0.106 0.894 15 C -0.184 4.184 16 N -0.419 5.419 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.183 1.183 20 H -0.181 1.181 21 C -0.231 4.231 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.132 0.868 28 H 0.193 0.807 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.429 2.046 3.473 4.277 hybrid contribution 0.392 0.729 -1.901 2.073 sum -1.038 2.775 1.572 3.354 Atomic orbital electron populations 1.21649 0.93818 1.02245 1.01450 1.20530 0.96939 0.91684 1.02323 1.19707 0.94889 0.95950 0.92231 1.19649 1.16319 0.93197 0.97223 1.22358 1.02993 0.98516 0.95104 1.82935 1.73110 1.05133 1.07631 1.24491 1.26859 1.05928 0.94521 1.17712 0.94921 0.89304 0.86902 1.86221 1.80587 1.24806 1.31669 1.23256 0.99192 0.81525 1.03558 1.18833 1.17457 0.94212 0.94536 1.18809 0.86462 0.91921 0.90255 1.19953 1.37941 0.96004 0.93094 0.89401 1.26928 0.91226 0.94942 1.05267 1.69885 1.27695 1.10117 1.34228 0.85149 0.80047 0.79241 0.75088 1.18513 1.18258 1.18137 1.20886 1.09234 0.96277 0.96723 0.92831 0.93963 0.90307 0.91805 0.90400 0.86753 0.80674 0.86659 0.92093 0.92399 0.89260 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.89 71.98 0.71 -3.36 16 2 C -0.08 -2.75 6.03 29.85 0.18 -2.57 16 3 C -0.02 -1.14 5.11 -20.03 -0.10 -1.24 16 4 C -0.24 -10.90 9.64 22.58 0.22 -10.68 16 5 C -0.07 -3.63 6.48 22.97 0.15 -3.48 16 6 S 0.05 2.18 23.29 -56.49 -1.32 0.86 16 7 C -0.38 -15.74 9.99 66.68 0.67 -15.07 16 8 C 0.17 7.92 6.64 21.60 0.14 8.06 16 9 O -0.32 -14.10 8.38 -94.86 -0.80 -14.90 16 10 C 0.02 0.58 9.91 113.37 1.12 1.70 16 11 C -0.24 -12.91 6.03 -19.89 -0.12 -13.03 16 12 C 0.13 7.24 5.73 -19.66 -0.11 7.12 16 13 C -0.44 -23.82 8.50 23.24 0.20 -23.62 16 14 H 0.09 4.71 6.32 -2.91 -0.02 4.70 16 15 C 0.04 1.71 5.15 85.24 0.44 2.15 16 16 N -0.80 -39.72 11.01 21.82 0.24 -39.48 16 17 Si 0.99 36.78 29.59 68.60 2.03 38.81 16 18 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 19 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 21 C -0.21 -10.89 8.26 22.64 0.19 -10.70 16 22 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.06 2.27 8.07 -2.39 -0.02 2.25 16 26 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 27 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 28 H 0.18 5.90 6.90 -2.91 -0.02 5.88 16 29 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.06 1.63 7.83 -2.39 -0.02 1.61 16 31 H 0.06 1.59 7.81 -2.39 -0.02 1.57 16 32 H 0.30 13.11 8.30 -92.71 -0.77 12.34 16 33 H 0.11 5.87 6.26 -2.91 -0.02 5.85 16 Total: -1.00 -61.39 291.13 4.96 -56.43 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 1.12 Total: 22.99 kcal Atomic # 6 Polarization: -68.40 SS G_CDS: 3.68 Total: -64.72 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.24 Total: -39.48 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.80 Total: -14.90 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.32 Total: 0.86 kcal Total: -61.39 4.96 -56.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307264.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.208 kcal (2) G-P(sol) polarization free energy of solvation -61.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds