Wall clock time and date at job start Mon Mar 30 2020 06:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47184 * 2 1 4 4 C 1.35709 * 119.94695 * 265.00247 * 3 2 1 5 5 C 1.40429 * 120.82726 * 179.97438 * 4 3 2 6 6 S 1.75999 * 130.27582 * 179.97438 * 5 4 3 7 7 C 1.75255 * 92.25641 * 180.02562 * 6 5 4 8 8 C 1.50704 * 124.23645 * 179.97438 * 7 6 5 9 9 O 1.42894 * 109.47160 * 270.00060 * 8 7 6 10 10 C 1.31690 * 111.52789 * 359.97438 * 7 6 5 11 11 C 1.40186 * 120.16622 * 0.02621 * 5 4 3 12 12 C 1.40490 * 119.03467 * 359.97438 * 11 5 4 13 13 C 1.39935 * 119.98326 * 359.74188 * 12 11 5 14 14 C 1.41280 * 120.05969 * 180.27602 * 13 12 11 15 15 H 1.08003 * 119.99926 * 206.14891 * 14 13 12 16 16 C 1.39852 * 119.99858 * 26.14884 * 14 13 12 17 17 N 1.30899 * 120.00118 * 15.29838 * 16 14 13 18 18 Si 1.86807 * 119.99926 * 195.29237 * 16 14 13 19 19 H 1.48503 * 109.47103 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47000 * 120.00169 * 18 16 14 21 21 H 1.48495 * 109.46999 * 240.00258 * 18 16 14 22 22 H 1.09003 * 109.47171 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46829 * 299.99860 * 1 2 3 24 24 H 1.09005 * 109.47553 * 59.99413 * 1 2 3 25 25 H 1.09002 * 109.46353 * 240.00230 * 2 1 3 26 26 H 1.08996 * 109.47270 * 120.00060 * 2 1 3 27 27 H 1.07996 * 119.58743 * 0.02562 * 4 3 2 28 28 H 1.09003 * 109.46870 * 30.00130 * 8 7 6 29 29 H 1.09000 * 109.47079 * 149.99197 * 8 7 6 30 30 H 0.96704 * 114.00081 * 180.02562 * 9 8 7 31 31 H 1.08003 * 122.55708 * 180.02562 * 10 7 6 32 32 H 1.08001 * 120.00608 * 179.97438 * 12 11 5 33 33 H 0.96999 * 119.99862 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3548 2.0254 -1.1714 5 6 2.8241 3.3487 -1.1930 6 16 3.3086 4.3622 -2.5479 7 6 3.6869 5.7103 -1.4938 8 6 4.2031 7.0425 -1.9732 9 8 5.6315 7.0159 -2.0064 10 6 3.4637 5.4133 -0.2304 11 6 2.9664 4.0652 0.0035 12 6 2.6329 3.4399 1.2165 13 6 2.1611 2.1225 1.2176 14 6 1.8197 1.4941 2.4361 15 1 1.8661 0.4184 2.5204 16 6 1.4215 2.2650 3.5329 17 7 1.0760 3.5161 3.3627 18 14 1.3827 1.5094 5.2408 19 1 1.8164 0.0912 5.1647 20 1 2.3005 2.2599 6.1351 21 1 0.0009 1.5766 5.7805 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.2483 1.4822 -2.0988 28 1 3.8201 7.2417 -2.9741 29 1 3.8699 7.8271 -1.2939 30 1 6.0334 7.8429 -2.3060 31 1 3.6369 6.1161 0.5712 32 1 2.7369 3.9772 2.1476 33 1 0.7995 4.0506 4.1234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396307825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:16 Heat of formation + Delta-G solvation = -30.456400 kcal Electronic energy + Delta-G solvation = -16884.896907 eV Core-core repulsion = 14193.841183 eV Total energy + Delta-G solvation = -2691.055724 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.38120 -36.98638 -35.08225 -33.64162 -31.88246 -29.65329 -28.54755 -25.92392 -25.07150 -22.26962 -21.82264 -20.05808 -19.16622 -17.34899 -17.07559 -16.40312 -15.26833 -14.77644 -14.62889 -13.80006 -13.67910 -13.48591 -12.75384 -12.67400 -12.63899 -12.14072 -11.92592 -11.56564 -11.47810 -11.24946 -11.14468 -10.78217 -10.61037 -10.30987 -10.14704 -9.91045 -9.78126 -9.52444 -9.40695 -9.16220 -8.28091 -7.27928 -6.80461 -6.69114 -4.38337 1.77912 2.50358 2.65191 3.04155 3.05816 3.06296 3.09683 3.35576 3.88473 4.50600 4.62645 5.23531 5.36701 5.46432 5.55112 5.83428 5.88612 5.97565 6.25801 6.28778 6.44188 6.53264 6.59519 6.68651 6.77992 7.00727 7.03606 7.09619 7.17665 7.47484 7.58071 7.68801 7.70805 7.89848 8.11893 8.50406 8.79218 8.81120 10.13224 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.022003 B = 0.006441 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.267152 B = 4345.901212 C = 5397.122402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.140 4.140 4 C -0.068 4.068 5 C -0.217 4.217 6 S 0.008 5.992 7 C -0.188 4.188 8 C 0.153 3.847 9 O -0.565 6.565 10 C -0.080 4.080 11 C -0.062 4.062 12 C -0.136 4.136 13 C 0.110 3.890 14 C -0.451 4.451 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.793 5.793 18 Si 0.907 3.093 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.275 1.275 22 H 0.039 0.961 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.374 0.626 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 3.029 -4.769 5.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.090 4.090 5 C -0.331 4.331 6 S 0.268 5.732 7 C -0.303 4.303 8 C 0.073 3.927 9 O -0.371 6.371 10 C -0.112 4.112 11 C -0.067 4.067 12 C -0.158 4.158 13 C 0.107 3.893 14 C -0.481 4.481 15 H 0.101 0.899 16 C -0.144 4.144 17 N -0.418 5.418 18 Si 0.731 3.269 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.200 1.200 22 H 0.059 0.941 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.221 0.779 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.736 2.457 -5.980 6.694 hybrid contribution -0.123 0.679 2.085 2.196 sum 1.613 3.136 -3.895 5.255 Atomic orbital electron populations 1.21662 0.96064 0.99754 1.02213 1.20201 0.95327 0.93744 1.00604 1.19490 1.05577 0.96501 0.92685 1.19495 1.00987 0.91827 0.96718 1.21873 1.17929 0.99090 0.94239 1.83215 1.73060 1.06076 1.10846 1.23084 1.10767 0.99290 0.97144 1.20385 0.80756 0.92437 0.99075 1.86640 1.19456 1.40440 1.90536 1.20978 0.98898 0.96033 0.95324 1.19079 1.01746 0.91793 0.94093 1.21186 1.03473 0.96577 0.94613 1.17253 0.88995 0.91418 0.91671 1.19551 1.39103 0.94939 0.94481 0.89851 1.25896 0.92702 0.94606 1.01174 1.69845 1.31056 1.08073 1.32853 0.86277 0.78589 0.80539 0.81479 1.18351 1.19746 1.19998 0.94146 0.91644 0.93764 0.93559 0.91415 0.88778 0.93030 0.92330 0.77939 0.85424 0.85666 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.89 37.16 0.37 -2.17 16 2 C -0.06 -1.20 5.56 -27.88 -0.15 -1.35 16 3 C -0.14 -3.23 5.14 -104.43 -0.54 -3.77 16 4 C -0.07 -1.54 9.60 -39.66 -0.38 -1.92 16 5 C -0.22 -5.09 6.51 -38.03 -0.25 -5.33 16 6 S 0.01 0.16 23.19 -107.50 -2.49 -2.34 16 7 C -0.19 -3.65 6.00 -36.18 -0.22 -3.87 16 8 C 0.15 2.24 7.47 36.01 0.27 2.51 16 9 O -0.57 -8.21 13.64 -35.23 -0.48 -8.69 16 10 C -0.08 -1.71 10.21 -38.53 -0.39 -2.10 16 11 C -0.06 -1.50 6.03 -105.39 -0.64 -2.14 16 12 C -0.14 -3.51 8.74 -38.10 -0.33 -3.85 16 13 C 0.11 2.81 5.55 -107.01 -0.59 2.21 16 14 C -0.45 -11.19 8.22 -37.82 -0.31 -11.51 16 15 H 0.08 1.98 6.33 -52.48 -0.33 1.65 16 16 C 0.07 1.77 5.17 -17.35 -0.09 1.68 16 17 N -0.79 -19.78 10.90 55.54 0.61 -19.18 16 18 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.06 1.32 7.92 -51.93 -0.41 0.90 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.81 8.03 -51.93 -0.42 0.39 16 26 H 0.07 1.32 6.47 -51.93 -0.34 0.99 16 27 H 0.09 1.92 8.04 -52.49 -0.42 1.50 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.37 3.15 9.12 45.56 0.42 3.56 16 31 H 0.13 2.47 8.06 -52.48 -0.42 2.04 16 32 H 0.13 3.33 6.14 -52.49 -0.32 3.00 16 33 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 293.69 15.07 4.43 4.43 Total: -1.00 -28.58 293.69 -9.30 -37.88 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.07 Total: 6.51 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: -3.26 Total: -31.61 kcal Atomic # 7 Polarization: -19.78 SS G_CDS: 0.61 Total: -19.18 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.48 Total: -8.69 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.49 Total: -2.34 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.58 -9.30 -37.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.421 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds