Wall clock time and date at job start Mon Mar 30 2020 06:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47184 * 2 1 4 4 C 1.35709 * 119.94695 * 265.00247 * 3 2 1 5 5 C 1.40429 * 120.82726 * 179.97438 * 4 3 2 6 6 S 1.75999 * 130.27582 * 179.97438 * 5 4 3 7 7 C 1.75255 * 92.25641 * 180.02562 * 6 5 4 8 8 C 1.50704 * 124.23645 * 179.97438 * 7 6 5 9 9 O 1.42894 * 109.47160 * 270.00060 * 8 7 6 10 10 C 1.31690 * 111.52789 * 359.97438 * 7 6 5 11 11 C 1.40186 * 120.16622 * 0.02621 * 5 4 3 12 12 C 1.40490 * 119.03467 * 359.97438 * 11 5 4 13 13 C 1.39935 * 119.98326 * 359.74188 * 12 11 5 14 14 C 1.41280 * 120.05969 * 180.27602 * 13 12 11 15 15 H 1.08003 * 119.99926 * 206.14891 * 14 13 12 16 16 C 1.39852 * 119.99858 * 26.14884 * 14 13 12 17 17 N 1.30899 * 120.00118 * 15.29838 * 16 14 13 18 18 Si 1.86807 * 119.99926 * 195.29237 * 16 14 13 19 19 H 1.48503 * 109.47103 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47000 * 120.00169 * 18 16 14 21 21 H 1.48495 * 109.46999 * 240.00258 * 18 16 14 22 22 H 1.09003 * 109.47171 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46829 * 299.99860 * 1 2 3 24 24 H 1.09005 * 109.47553 * 59.99413 * 1 2 3 25 25 H 1.09002 * 109.46353 * 240.00230 * 2 1 3 26 26 H 1.08996 * 109.47270 * 120.00060 * 2 1 3 27 27 H 1.07996 * 119.58743 * 0.02562 * 4 3 2 28 28 H 1.09003 * 109.46870 * 30.00130 * 8 7 6 29 29 H 1.09000 * 109.47079 * 149.99197 * 8 7 6 30 30 H 0.96704 * 114.00081 * 180.02562 * 9 8 7 31 31 H 1.08003 * 122.55708 * 180.02562 * 10 7 6 32 32 H 1.08001 * 120.00608 * 179.97438 * 12 11 5 33 33 H 0.96999 * 119.99862 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3548 2.0254 -1.1714 5 6 2.8241 3.3487 -1.1930 6 16 3.3086 4.3622 -2.5479 7 6 3.6869 5.7103 -1.4938 8 6 4.2031 7.0425 -1.9732 9 8 5.6315 7.0159 -2.0064 10 6 3.4637 5.4133 -0.2304 11 6 2.9664 4.0652 0.0035 12 6 2.6329 3.4399 1.2165 13 6 2.1611 2.1225 1.2176 14 6 1.8197 1.4941 2.4361 15 1 1.8661 0.4184 2.5204 16 6 1.4215 2.2650 3.5329 17 7 1.0760 3.5161 3.3627 18 14 1.3827 1.5094 5.2408 19 1 1.8164 0.0912 5.1647 20 1 2.3005 2.2599 6.1351 21 1 0.0009 1.5766 5.7805 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.2483 1.4822 -2.0988 28 1 3.8201 7.2417 -2.9741 29 1 3.8699 7.8271 -1.2939 30 1 6.0334 7.8429 -2.3060 31 1 3.6369 6.1161 0.5712 32 1 2.7369 3.9772 2.1476 33 1 0.7995 4.0506 4.1234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396307825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:16 Heat of formation + Delta-G solvation = -47.185185 kcal Electronic energy + Delta-G solvation = -16885.622322 eV Core-core repulsion = 14193.841183 eV Total energy + Delta-G solvation = -2691.781138 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.11703 -38.23780 -36.63316 -35.41638 -33.43480 -31.47522 -30.09257 -27.63220 -26.63204 -23.83800 -23.57261 -21.69066 -20.87811 -18.85747 -18.43546 -18.04177 -16.98954 -16.27071 -16.20105 -15.37073 -15.19551 -14.93746 -14.43896 -14.32977 -14.17604 -13.78966 -13.58717 -13.19541 -12.90697 -12.81773 -12.80635 -12.45274 -12.14245 -11.91172 -11.69513 -11.49628 -11.28577 -11.13592 -10.98478 -10.91398 -10.05769 -9.05095 -8.59964 -8.40260 -6.26324 0.10722 0.85509 0.90615 1.33312 1.40113 1.43803 1.54331 1.65363 2.21323 2.70719 3.46517 3.62840 4.01150 4.18270 4.23288 4.31258 4.41291 4.47052 4.65416 4.75463 4.83562 4.95353 4.99520 5.09233 5.15831 5.30128 5.30584 5.41179 5.55129 5.68591 5.81245 5.87471 6.07420 6.27411 6.65138 6.92016 6.93295 6.97186 8.35787 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.022003 B = 0.006441 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.267152 B = 4345.901212 C = 5397.122402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 C -0.149 4.149 4 C -0.076 4.076 5 C -0.244 4.244 6 S 0.044 5.956 7 C -0.175 4.175 8 C 0.153 3.847 9 O -0.586 6.586 10 C -0.115 4.115 11 C -0.078 4.078 12 C -0.172 4.172 13 C 0.084 3.916 14 C -0.473 4.473 15 H 0.088 0.912 16 C 0.033 3.967 17 N -0.826 5.826 18 Si 0.977 3.023 19 H -0.254 1.254 20 H -0.270 1.270 21 H -0.268 1.268 22 H 0.073 0.927 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.402 0.598 31 H 0.138 0.862 32 H 0.105 0.895 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 3.026 -5.905 6.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.097 4.097 3 C -0.152 4.152 4 C -0.099 4.099 5 C -0.358 4.358 6 S 0.305 5.695 7 C -0.290 4.290 8 C 0.074 3.926 9 O -0.396 6.396 10 C -0.146 4.146 11 C -0.084 4.084 12 C -0.194 4.194 13 C 0.080 3.920 14 C -0.503 4.503 15 H 0.106 0.894 16 C -0.181 4.181 17 N -0.452 5.452 18 Si 0.799 3.201 19 H -0.177 1.177 20 H -0.195 1.195 21 H -0.193 1.193 22 H 0.091 0.909 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.253 0.747 31 H 0.156 0.844 32 H 0.123 0.877 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.991 2.469 -7.144 7.816 hybrid contribution -0.141 0.772 2.274 2.406 sum 1.851 3.241 -4.870 6.135 Atomic orbital electron populations 1.21585 0.94986 1.01476 1.00882 1.20250 0.96168 0.91670 1.01597 1.19912 1.04981 0.98150 0.92132 1.19831 1.00484 0.91974 0.97562 1.22334 1.17886 0.99951 0.95676 1.82970 1.72115 1.05313 1.09116 1.23767 1.08105 1.00816 0.96275 1.20495 0.81186 0.89988 1.00887 1.86548 1.19101 1.42959 1.90977 1.21063 1.01357 0.95409 0.96806 1.19442 1.01513 0.93417 0.94050 1.21116 1.06261 0.97435 0.94624 1.17633 0.89445 0.91824 0.93069 1.19772 1.40029 0.95260 0.95213 0.89449 1.26729 0.91833 0.94866 1.04715 1.69928 1.31768 1.09430 1.34123 0.85215 0.78705 0.79755 0.76448 1.17705 1.19514 1.19293 0.90851 0.94406 0.93606 0.91041 0.91800 0.86376 0.90527 0.89877 0.74667 0.84392 0.87748 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.89 71.98 0.71 -3.96 16 2 C -0.06 -2.28 5.56 29.85 0.17 -2.12 16 3 C -0.15 -7.00 5.14 -19.74 -0.10 -7.10 16 4 C -0.08 -3.46 9.60 22.22 0.21 -3.25 16 5 C -0.24 -11.49 6.51 23.28 0.15 -11.34 16 6 S 0.04 1.71 23.19 -56.49 -1.31 0.40 16 7 C -0.17 -6.50 6.00 25.01 0.15 -6.35 16 8 C 0.15 4.02 7.47 71.24 0.53 4.55 16 9 O -0.59 -15.16 13.64 -148.98 -2.03 -17.20 16 10 C -0.11 -4.92 10.21 23.48 0.24 -4.68 16 11 C -0.08 -3.94 6.03 -20.36 -0.12 -4.06 16 12 C -0.17 -9.36 8.74 23.23 0.20 -9.16 16 13 C 0.08 4.45 5.55 -21.41 -0.12 4.33 16 14 C -0.47 -24.30 8.22 23.41 0.19 -24.11 16 15 H 0.09 4.25 6.33 -2.91 -0.02 4.23 16 16 C 0.03 1.63 5.17 85.22 0.44 2.07 16 17 N -0.83 -43.00 10.90 21.81 0.24 -42.76 16 18 Si 0.98 37.55 29.59 68.60 2.03 39.58 16 19 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 20 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.04 1.52 7.92 -2.38 -0.02 1.50 16 24 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.07 2.36 8.03 -2.39 -0.02 2.34 16 26 H 0.06 2.48 6.47 -2.39 -0.02 2.46 16 27 H 0.12 4.65 8.04 -2.91 -0.02 4.62 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.40 5.29 9.12 -74.05 -0.68 4.62 16 31 H 0.14 5.44 8.06 -2.91 -0.02 5.41 16 32 H 0.10 5.96 6.14 -2.91 -0.02 5.94 16 33 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 Total: -1.00 -63.66 293.69 2.04 -61.62 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.46 Total: 23.52 kcal Atomic # 6 Polarization: -67.82 SS G_CDS: 2.66 Total: -65.16 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.24 Total: -42.76 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -2.03 Total: -17.20 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.31 Total: 0.40 kcal Total: -63.66 2.04 -61.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.430 kcal (2) G-P(sol) polarization free energy of solvation -63.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds