Wall clock time and date at job start Mon Mar 30 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46802 * 2 1 4 4 C 1.32579 * 124.59213 * 89.99894 * 3 2 1 5 5 C 1.40365 * 115.88465 * 179.73048 * 4 3 2 6 6 C 1.40285 * 112.38985 * 0.02562 * 5 4 3 7 7 C 1.38909 * 120.19583 * 180.02562 * 6 5 4 8 8 C 1.40452 * 120.07462 * 0.02562 * 7 6 5 9 9 C 1.40993 * 120.17784 * 179.97438 * 8 7 6 10 10 H 1.08007 * 120.00031 * 154.38861 * 9 8 7 11 11 C 1.39835 * 120.00106 * 334.40024 * 9 8 7 12 12 N 1.30910 * 119.99322 * 343.11850 * 11 9 8 13 13 Si 1.86794 * 120.00156 * 163.12664 * 11 9 8 14 14 H 1.48501 * 109.47502 * 89.99488 * 13 11 9 15 15 H 1.48504 * 109.46895 * 209.99557 * 13 11 9 16 16 H 1.48495 * 109.47172 * 329.99262 * 13 11 9 17 17 C 1.41115 * 119.65069 * 359.97438 * 8 7 6 18 18 C 1.35724 * 120.33597 * 359.97438 * 17 8 7 19 19 O 1.35840 * 119.61692 * 180.02562 * 18 17 8 20 20 C 1.42905 * 116.99776 * 0.02562 * 19 18 17 21 21 S 1.75474 * 124.59556 * 269.69633 * 3 2 1 22 22 H 1.08996 * 109.47341 * 300.00276 * 1 2 3 23 23 H 1.09005 * 109.46743 * 60.00196 * 1 2 3 24 24 H 1.09001 * 109.46701 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47298 * 240.00268 * 2 1 3 26 26 H 1.08993 * 109.46910 * 120.00167 * 2 1 3 27 27 H 1.08005 * 122.05437 * 359.76113 * 4 3 2 28 28 H 1.07999 * 119.96720 * 180.02562 * 7 6 5 29 29 H 0.96998 * 119.99340 * 180.02562 * 12 11 9 30 30 H 1.07991 * 119.83273 * 180.02562 * 17 8 7 31 31 H 1.09004 * 109.46616 * 179.97438 * 20 19 18 32 32 H 1.08999 * 109.47138 * 299.99578 * 20 19 18 33 33 H 1.08996 * 109.47418 * 60.00371 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2831 2.1305 1.0914 5 6 2.7512 3.4366 0.8789 6 6 2.8659 3.7480 -0.4841 7 6 3.3160 5.0015 -0.8789 8 6 3.6588 5.9624 0.0863 9 6 4.1165 7.2351 -0.3120 10 1 3.9902 8.0840 0.3437 11 6 4.7337 7.3984 -1.5561 12 7 5.1852 6.3547 -2.2046 13 14 4.9141 9.1056 -2.2923 14 1 6.2021 9.7005 -1.8534 15 1 4.8923 9.0105 -3.7742 16 1 3.7914 9.9632 -1.8349 17 6 3.5428 5.6474 1.4570 18 6 3.1021 4.4235 1.8441 19 8 2.9955 4.1360 3.1675 20 6 3.3629 5.1666 4.0868 21 16 2.3716 2.3576 -1.4445 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.1368 1.7281 2.0830 28 1 3.4025 5.2374 -1.9293 29 1 5.6137 6.4680 -3.0674 30 1 3.8052 6.3842 2.2016 31 1 3.2307 4.8070 5.1073 32 1 4.4065 5.4388 3.9294 33 1 2.7311 6.0399 3.9251 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396307938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:24 Heat of formation + Delta-G solvation = -19.789231 kcal Electronic energy + Delta-G solvation = -16931.561231 eV Core-core repulsion = 14240.968070 eV Total energy + Delta-G solvation = -2690.593161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.18737 -36.94001 -35.55238 -33.61512 -31.78082 -28.82342 -28.47903 -26.89089 -25.18634 -22.96059 -21.85132 -20.66667 -18.98120 -18.16814 -16.37868 -15.67659 -15.21308 -15.01559 -14.92861 -14.54131 -13.79298 -13.65544 -13.11615 -13.01479 -12.49768 -12.08470 -12.01925 -11.78373 -11.50573 -11.26885 -11.06802 -10.85153 -10.82224 -10.69567 -10.56432 -10.05602 -9.98102 -9.73872 -9.58255 -8.99763 -8.09888 -7.31426 -6.99138 -6.43772 -4.52949 1.95105 2.69702 2.76060 2.88122 2.96281 3.01152 3.10165 3.52615 3.75951 4.12198 4.44065 5.32165 5.40758 5.44984 5.58405 5.65908 5.70094 5.83896 5.92621 6.10228 6.19265 6.28016 6.32804 6.49091 6.57487 6.75259 6.81449 6.97179 7.01340 7.23676 7.42537 7.67057 7.73268 7.94313 8.14320 8.37712 8.60468 8.72389 9.92670 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.006741 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.975775 B = 4152.836227 C = 5351.216526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 C -0.242 4.242 4 C -0.055 4.055 5 C -0.223 4.223 6 C -0.049 4.049 7 C -0.178 4.178 8 C 0.152 3.848 9 C -0.438 4.438 10 H 0.085 0.915 11 C 0.073 3.927 12 N -0.771 5.771 13 Si 0.914 3.086 14 H -0.267 1.267 15 H -0.273 1.273 16 H -0.258 1.258 17 C -0.291 4.291 18 C 0.183 3.817 19 O -0.329 6.329 20 C 0.034 3.966 21 S 0.006 5.994 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.352 -3.488 3.632 6.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.356 4.356 4 C -0.084 4.084 5 C -0.229 4.229 6 C -0.164 4.164 7 C -0.205 4.205 8 C 0.145 3.855 9 C -0.467 4.467 10 H 0.103 0.897 11 C -0.148 4.148 12 N -0.394 5.394 13 Si 0.737 3.263 14 H -0.192 1.192 15 H -0.197 1.197 16 H -0.182 1.182 17 C -0.311 4.311 18 C 0.137 3.863 19 O -0.243 6.243 20 C -0.062 4.062 21 S 0.267 5.733 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.417 -4.144 2.020 5.738 hybrid contribution 0.483 1.357 1.152 1.844 sum -2.934 -2.787 3.172 5.142 Atomic orbital electron populations 1.21782 0.95615 1.00601 1.02259 1.19832 0.95185 0.90996 1.01638 1.23245 1.16590 1.00353 0.95394 1.19497 0.98325 0.92933 0.97636 1.16924 1.20012 0.95083 0.90843 1.22076 1.02727 0.97533 0.94048 1.20555 1.08471 0.91369 1.00082 1.17187 0.86420 0.92422 0.89445 1.19605 1.31386 0.94943 1.00755 0.89718 1.26034 0.93084 0.99291 0.96429 1.69873 1.24451 1.31860 1.13228 0.86211 0.79879 0.81568 0.78639 1.19200 1.19750 1.18161 1.20684 1.16781 0.96257 0.97413 1.18353 0.94592 0.92863 0.80515 1.85917 1.82904 1.40831 1.14655 1.22856 1.00052 0.91386 0.91911 1.83563 1.73336 1.06714 1.09737 0.92693 0.92673 0.93177 0.91966 0.91430 0.86448 0.85815 0.90225 0.87318 0.89560 0.93068 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 37.16 0.37 -1.60 16 2 C -0.04 -0.57 6.39 -27.88 -0.18 -0.75 16 3 C -0.24 -4.76 5.68 -36.21 -0.21 -4.97 16 4 C -0.05 -1.17 9.80 -40.69 -0.40 -1.57 16 5 C -0.22 -5.40 5.90 -106.71 -0.63 -6.03 16 6 C -0.05 -1.22 6.46 -38.56 -0.25 -1.47 16 7 C -0.18 -4.68 8.71 -38.50 -0.34 -5.01 16 8 C 0.15 3.94 5.56 -106.93 -0.59 3.34 16 9 C -0.44 -10.95 9.03 -37.94 -0.34 -11.29 16 10 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 11 C 0.07 1.72 5.14 -17.35 -0.09 1.63 16 12 N -0.77 -19.13 10.96 55.54 0.61 -18.53 16 13 Si 0.91 17.50 29.59 -169.99 -5.03 12.47 16 14 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 15 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 16 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 17 C -0.29 -6.95 8.68 -39.39 -0.34 -7.29 16 18 C 0.18 4.30 6.72 -38.87 -0.26 4.04 16 19 O -0.33 -6.74 10.35 -19.24 -0.20 -6.94 16 20 C 0.03 0.52 9.79 101.05 0.99 1.51 16 21 S 0.01 0.13 23.26 -107.50 -2.50 -2.37 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 28 H 0.12 3.34 6.18 -52.49 -0.32 3.02 16 29 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 30 H 0.11 2.34 6.13 -52.49 -0.32 2.02 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.78 7.62 -51.93 -0.40 0.38 16 33 H 0.05 0.74 7.62 -51.93 -0.40 0.35 16 LS Contribution 293.89 15.07 4.43 4.43 Total: -1.00 -27.59 293.89 -8.91 -36.50 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.95 Total: 3.89 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -2.27 Total: -29.45 kcal Atomic # 7 Polarization: -19.13 SS G_CDS: 0.61 Total: -18.53 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.20 Total: -6.94 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.50 Total: -2.37 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.59 -8.91 -36.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.706 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds