Wall clock time and date at job start Mon Mar 30 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46802 * 2 1 4 4 C 1.32579 * 124.59213 * 89.99894 * 3 2 1 5 5 C 1.40365 * 115.88465 * 179.73048 * 4 3 2 6 6 C 1.40285 * 112.38985 * 0.02562 * 5 4 3 7 7 C 1.38909 * 120.19583 * 180.02562 * 6 5 4 8 8 C 1.40452 * 120.07462 * 0.02562 * 7 6 5 9 9 C 1.40993 * 120.17784 * 179.97438 * 8 7 6 10 10 H 1.08007 * 120.00031 * 154.38861 * 9 8 7 11 11 C 1.39835 * 120.00106 * 334.40024 * 9 8 7 12 12 N 1.30910 * 119.99322 * 343.11850 * 11 9 8 13 13 Si 1.86794 * 120.00156 * 163.12664 * 11 9 8 14 14 H 1.48501 * 109.47502 * 89.99488 * 13 11 9 15 15 H 1.48504 * 109.46895 * 209.99557 * 13 11 9 16 16 H 1.48495 * 109.47172 * 329.99262 * 13 11 9 17 17 C 1.41115 * 119.65069 * 359.97438 * 8 7 6 18 18 C 1.35724 * 120.33597 * 359.97438 * 17 8 7 19 19 O 1.35840 * 119.61692 * 180.02562 * 18 17 8 20 20 C 1.42905 * 116.99776 * 0.02562 * 19 18 17 21 21 S 1.75474 * 124.59556 * 269.69633 * 3 2 1 22 22 H 1.08996 * 109.47341 * 300.00276 * 1 2 3 23 23 H 1.09005 * 109.46743 * 60.00196 * 1 2 3 24 24 H 1.09001 * 109.46701 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47298 * 240.00268 * 2 1 3 26 26 H 1.08993 * 109.46910 * 120.00167 * 2 1 3 27 27 H 1.08005 * 122.05437 * 359.76113 * 4 3 2 28 28 H 1.07999 * 119.96720 * 180.02562 * 7 6 5 29 29 H 0.96998 * 119.99340 * 180.02562 * 12 11 9 30 30 H 1.07991 * 119.83273 * 180.02562 * 17 8 7 31 31 H 1.09004 * 109.46616 * 179.97438 * 20 19 18 32 32 H 1.08999 * 109.47138 * 299.99578 * 20 19 18 33 33 H 1.08996 * 109.47418 * 60.00371 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2831 2.1305 1.0914 5 6 2.7512 3.4366 0.8789 6 6 2.8659 3.7480 -0.4841 7 6 3.3160 5.0015 -0.8789 8 6 3.6588 5.9624 0.0863 9 6 4.1165 7.2351 -0.3120 10 1 3.9902 8.0840 0.3437 11 6 4.7337 7.3984 -1.5561 12 7 5.1852 6.3547 -2.2046 13 14 4.9141 9.1056 -2.2923 14 1 6.2021 9.7005 -1.8534 15 1 4.8923 9.0105 -3.7742 16 1 3.7914 9.9632 -1.8349 17 6 3.5428 5.6474 1.4570 18 6 3.1021 4.4235 1.8441 19 8 2.9955 4.1360 3.1675 20 6 3.3629 5.1666 4.0868 21 16 2.3716 2.3576 -1.4445 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.1368 1.7281 2.0830 28 1 3.4025 5.2374 -1.9293 29 1 5.6137 6.4680 -3.0674 30 1 3.8052 6.3842 2.2016 31 1 3.2307 4.8070 5.1073 32 1 4.4065 5.4388 3.9294 33 1 2.7311 6.0399 3.9251 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396307938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:23 Heat of formation + Delta-G solvation = -33.498866 kcal Electronic energy + Delta-G solvation = -16932.155725 eV Core-core repulsion = 14240.968070 eV Total energy + Delta-G solvation = -2691.187655 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88597 -38.58644 -37.22997 -35.23850 -33.36160 -30.58404 -30.13230 -28.37936 -26.76983 -24.49958 -23.52279 -22.39251 -20.60934 -19.90098 -18.12589 -17.32244 -16.89392 -16.60170 -16.50795 -16.17675 -15.22654 -15.17044 -14.62923 -14.45846 -14.15039 -13.73728 -13.59785 -13.21587 -12.99679 -12.83138 -12.63495 -12.35021 -12.22550 -12.17040 -11.99205 -11.80124 -11.54167 -11.45059 -11.33543 -10.76091 -9.85543 -9.11580 -8.76194 -8.22031 -6.41200 0.21135 0.89186 0.94656 1.32609 1.37598 1.38943 1.53281 1.80169 2.15554 2.59323 2.65091 3.53038 3.93975 4.28727 4.36205 4.41051 4.42857 4.53412 4.55209 4.70124 4.78850 4.91062 4.95028 5.01044 5.04358 5.10242 5.18872 5.32156 5.39678 5.46893 5.66369 5.82241 5.97667 6.04360 6.35391 6.57244 6.74559 6.90989 8.18932 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.006741 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.975775 B = 4152.836227 C = 5351.216526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C -0.216 4.216 4 C -0.080 4.080 5 C -0.239 4.239 6 C -0.077 4.077 7 C -0.207 4.207 8 C 0.124 3.876 9 C -0.470 4.470 10 H 0.091 0.909 11 C 0.033 3.967 12 N -0.808 5.808 13 Si 0.989 3.011 14 H -0.257 1.257 15 H -0.267 1.267 16 H -0.254 1.254 17 C -0.302 4.302 18 C 0.179 3.821 19 O -0.335 6.335 20 C 0.024 3.976 21 S 0.016 5.984 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.138 0.862 28 H 0.105 0.895 29 H 0.293 0.707 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.052 0.948 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 -4.388 4.504 7.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 C -0.330 4.330 4 C -0.108 4.108 5 C -0.244 4.244 6 C -0.192 4.192 7 C -0.234 4.234 8 C 0.117 3.883 9 C -0.498 4.498 10 H 0.110 0.890 11 C -0.184 4.184 12 N -0.432 5.432 13 Si 0.809 3.191 14 H -0.182 1.182 15 H -0.192 1.192 16 H -0.178 1.178 17 C -0.323 4.323 18 C 0.132 3.868 19 O -0.249 6.249 20 C -0.070 4.070 21 S 0.277 5.723 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.155 0.845 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.070 0.930 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.027 -5.047 2.912 7.083 hybrid contribution 0.616 1.442 0.970 1.844 sum -3.411 -3.605 3.883 6.301 Atomic orbital electron populations 1.21750 0.93937 1.02548 1.01632 1.20058 0.96508 0.87989 1.03354 1.23904 1.13464 1.01850 0.93778 1.19638 0.99894 0.92169 0.99125 1.17405 1.19722 0.96548 0.90770 1.22409 1.03014 0.98250 0.95521 1.20454 1.10898 0.92728 0.99297 1.17555 0.87126 0.93111 0.90459 1.19898 1.32678 0.94997 1.02231 0.89048 1.26945 0.91963 1.03338 0.96183 1.69940 1.25241 1.34219 1.13847 0.85089 0.80102 0.76192 0.77746 1.18157 1.19163 1.17755 1.20867 1.17174 0.97144 0.97072 1.18442 0.93886 0.92453 0.81979 1.85899 1.82740 1.42646 1.13582 1.23227 1.00178 0.91013 0.92618 1.83460 1.72708 1.05649 1.10505 0.93084 0.93601 0.89993 0.90688 0.89234 0.84476 0.87754 0.89584 0.85665 0.85473 0.92964 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.89 71.98 0.71 -2.64 16 2 C -0.04 -1.09 6.39 29.85 0.19 -0.89 16 3 C -0.22 -8.12 5.68 24.53 0.14 -7.98 16 4 C -0.08 -3.31 9.80 21.63 0.21 -3.10 16 5 C -0.24 -11.65 5.90 -21.22 -0.13 -11.77 16 6 C -0.08 -3.95 6.46 22.93 0.15 -3.80 16 7 C -0.21 -11.45 8.71 22.97 0.20 -11.25 16 8 C 0.12 6.70 5.56 -21.36 -0.12 6.58 16 9 C -0.47 -24.33 9.03 23.33 0.21 -24.12 16 10 H 0.09 4.41 7.90 -2.91 -0.02 4.38 16 11 C 0.03 1.62 5.14 85.22 0.44 2.06 16 12 N -0.81 -41.73 10.96 21.81 0.24 -41.49 16 13 Si 0.99 36.26 29.59 68.60 2.03 38.29 16 14 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 15 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 16 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 17 C -0.30 -14.81 8.68 22.39 0.19 -14.62 16 18 C 0.18 8.50 6.72 22.73 0.15 8.66 16 19 O -0.33 -13.38 10.35 -91.75 -0.95 -14.33 16 20 C 0.02 0.70 9.79 113.37 1.11 1.81 16 21 S 0.02 0.69 23.26 -56.49 -1.31 -0.62 16 22 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.14 5.10 8.06 -2.91 -0.02 5.07 16 28 H 0.10 6.02 6.18 -2.91 -0.02 6.00 16 29 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 30 H 0.13 5.48 6.13 -2.92 -0.02 5.46 16 31 H 0.13 2.65 8.14 -2.38 -0.02 2.64 16 32 H 0.05 1.52 7.62 -2.39 -0.02 1.50 16 33 H 0.05 1.56 7.62 -2.39 -0.02 1.55 16 Total: -1.00 -61.89 293.89 4.59 -57.30 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 1.12 Total: 21.92 kcal Atomic # 6 Polarization: -64.53 SS G_CDS: 3.46 Total: -61.06 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.24 Total: -41.49 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.95 Total: -14.33 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -1.31 Total: -0.62 kcal Total: -61.89 4.59 -57.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396307938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.801 kcal (2) G-P(sol) polarization free energy of solvation -61.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds