Wall clock time and date at job start Mon Mar 30 2020 06:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46832 * 2 1 4 4 C 1.37473 * 119.78804 * 265.68420 * 3 2 1 5 5 C 1.38571 * 120.31351 * 180.02562 * 4 3 2 6 6 C 1.38136 * 120.12613 * 0.02562 * 5 4 3 7 7 O 1.35926 * 119.86543 * 180.02562 * 6 5 4 8 8 C 1.42892 * 117.00165 * 359.97438 * 7 6 5 9 9 C 1.40241 * 120.26757 * 359.97438 * 6 5 4 10 10 S 1.75775 * 130.19394 * 180.29000 * 9 6 5 11 11 C 1.69980 * 93.22721 * 180.08221 * 10 9 6 12 12 C 1.36458 * 111.93253 * 359.64641 * 11 10 9 13 13 C 1.40806 * 123.30340 * 180.28938 * 12 11 10 14 14 H 1.07996 * 120.00103 * 150.24561 * 13 12 11 15 15 C 1.39703 * 119.99778 * 330.25126 * 13 12 11 16 16 N 1.31083 * 120.00035 * 351.10156 * 15 13 12 17 17 Si 1.86800 * 119.99881 * 171.10396 * 15 13 12 18 18 H 1.48504 * 109.46933 * 59.99861 * 17 15 13 19 19 H 1.48499 * 109.47022 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47020 * 299.99887 * 17 15 13 21 21 C 1.39239 * 119.59594 * 0.02562 * 9 6 5 22 22 H 1.08997 * 109.47334 * 59.99902 * 1 2 3 23 23 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47261 * 300.00038 * 1 2 3 25 25 H 1.08997 * 109.46867 * 240.00198 * 2 1 3 26 26 H 1.08998 * 109.47081 * 119.99171 * 2 1 3 27 27 H 1.08001 * 119.84034 * 0.02736 * 4 3 2 28 28 H 1.08006 * 119.93348 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47464 * 179.97438 * 8 7 6 30 30 H 1.08999 * 109.47152 * 299.99812 * 8 7 6 31 31 H 1.09002 * 109.47256 * 59.99918 * 8 7 6 32 32 H 1.07998 * 124.03591 * 179.91511 * 11 10 9 33 33 H 0.96996 * 119.99803 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3445 2.0348 -1.1897 5 6 2.8077 3.3408 -1.2023 6 6 2.9592 4.0342 -0.0173 7 8 3.4134 5.3151 -0.0359 8 6 3.7142 5.8783 -1.3142 9 6 2.6450 3.4223 1.2049 10 16 2.7304 4.0518 2.8438 11 6 2.1701 2.6023 3.5324 12 6 1.9095 1.6553 2.5851 13 6 1.4286 0.3677 2.8909 14 1 0.8046 -0.1578 2.1832 15 6 1.7584 -0.2299 4.1098 16 7 2.6514 0.3262 4.8920 17 14 0.9271 -1.8214 4.6250 18 1 1.2116 -2.8765 3.6195 19 1 1.4487 -2.2463 5.9489 20 1 -0.5395 -1.6068 4.7160 21 6 2.1796 2.1100 1.2173 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 2.2282 1.4968 -2.1189 28 1 3.0516 3.8170 -2.1405 29 1 4.0656 6.9023 -1.1867 30 1 4.4899 5.2855 -1.7990 31 1 2.8163 5.8770 -1.9322 32 1 2.0322 2.4505 4.5928 33 1 2.8807 -0.0890 5.7381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396308703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:58 Heat of formation + Delta-G solvation = -11.804093 kcal Electronic energy + Delta-G solvation = -17416.086738 eV Core-core repulsion = 14725.839839 eV Total energy + Delta-G solvation = -2690.246899 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.55732 -37.65568 -34.62622 -33.13550 -32.06252 -29.08716 -27.80498 -26.76071 -25.74470 -22.81036 -22.40185 -20.31608 -19.53565 -17.71788 -16.56907 -15.87708 -15.35919 -15.26493 -14.92990 -14.12221 -13.73550 -13.52048 -13.11212 -12.87995 -12.51883 -12.23781 -11.89658 -11.54180 -11.47865 -11.16784 -10.92304 -10.82909 -10.71459 -10.53321 -10.39302 -10.05624 -9.90194 -9.70408 -9.24856 -9.04123 -7.84881 -7.38627 -6.61214 -6.42686 -4.23019 1.87197 2.07086 2.91089 3.02485 3.11904 3.14304 3.72855 3.75339 3.87194 4.04721 4.50741 5.23764 5.27866 5.34796 5.42433 5.54310 5.62409 5.72490 5.82572 6.00769 6.13998 6.23612 6.35342 6.50179 6.65014 6.81989 6.83666 6.94352 6.99015 7.28545 7.36104 7.47322 7.76143 7.92522 8.00654 8.53558 8.84916 8.95562 10.39490 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.024304 B = 0.007761 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.774672 B = 3606.728710 C = 4587.220643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 C -0.067 4.067 4 C -0.111 4.111 5 C -0.217 4.217 6 C 0.141 3.859 7 O -0.319 6.319 8 C 0.032 3.968 9 C -0.167 4.167 10 S 0.056 5.944 11 C -0.336 4.336 12 C 0.081 3.919 13 C -0.448 4.448 14 H 0.092 0.908 15 C 0.069 3.931 16 N -0.808 5.808 17 Si 0.906 3.094 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.266 1.266 21 C -0.026 4.026 22 H 0.043 0.957 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.155 0.845 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 3.035 -8.997 9.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 C -0.069 4.069 4 C -0.133 4.133 5 C -0.238 4.238 6 C 0.092 3.908 7 O -0.232 6.232 8 C -0.064 4.064 9 C -0.282 4.282 10 S 0.320 5.680 11 C -0.472 4.472 12 C 0.072 3.928 13 C -0.482 4.482 14 H 0.110 0.890 15 C -0.146 4.146 16 N -0.435 5.435 17 Si 0.731 3.269 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.191 1.191 21 C -0.037 4.037 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.137 0.863 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.173 0.827 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.081 4.476 -7.848 9.036 hybrid contribution -0.576 -2.121 -0.528 2.260 sum -0.495 2.355 -8.376 8.715 Atomic orbital electron populations 1.21758 0.95613 1.00762 1.01933 1.20708 0.95705 0.93217 1.03105 1.19539 1.00248 0.96082 0.90995 1.20357 1.01878 0.94256 0.96837 1.20684 1.10671 0.96889 0.95560 1.18192 0.97134 0.83271 0.92225 1.86063 1.80476 1.25833 1.30866 1.22920 1.00020 0.98584 0.84858 1.21905 1.11457 0.98632 0.96219 1.81993 1.72922 1.18647 0.94406 1.24377 1.23903 0.95318 1.03563 1.17256 0.95440 0.93995 0.86105 1.19227 1.28011 0.99439 1.01485 0.89023 1.25768 0.93782 0.98924 0.96128 1.69880 1.24927 1.38593 1.10130 0.86400 0.80421 0.81776 0.78310 1.19137 1.20573 1.19051 1.19495 0.98052 0.91199 0.94980 0.93803 0.93323 0.91362 0.92929 0.88088 0.86778 0.86333 0.88941 0.93112 0.93135 0.82739 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.04 37.16 0.34 -2.12 16 2 C -0.09 -1.69 5.34 -27.88 -0.15 -1.84 16 3 C -0.07 -1.39 5.18 -103.99 -0.54 -1.93 16 4 C -0.11 -2.03 9.63 -39.74 -0.38 -2.41 16 5 C -0.22 -3.87 9.02 -39.50 -0.36 -4.23 16 6 C 0.14 2.88 6.72 -38.87 -0.26 2.62 16 7 O -0.32 -5.86 10.47 -19.51 -0.20 -6.06 16 8 C 0.03 0.40 9.81 101.05 0.99 1.39 16 9 C -0.17 -3.91 6.39 -38.46 -0.25 -4.16 16 10 S 0.06 1.32 22.93 -107.50 -2.46 -1.14 16 11 C -0.34 -8.87 9.46 30.09 0.28 -8.58 16 12 C 0.08 2.13 5.61 -106.17 -0.60 1.54 16 13 C -0.45 -11.48 7.33 -38.06 -0.28 -11.76 16 14 H 0.09 2.17 3.73 -52.49 -0.20 1.98 16 15 C 0.07 1.74 5.36 -17.32 -0.09 1.65 16 16 N -0.81 -21.38 11.13 55.54 0.62 -20.76 16 17 Si 0.91 18.88 29.57 -169.99 -5.03 13.86 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 C -0.03 -0.63 5.99 -105.22 -0.63 -1.26 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.31 6.92 -51.93 -0.36 0.95 16 25 H 0.05 0.85 8.05 -51.93 -0.42 0.43 16 26 H 0.10 2.12 5.46 -51.93 -0.28 1.84 16 27 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.12 1.70 6.25 -52.48 -0.33 1.37 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 31 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 32 H 0.16 4.29 6.71 -52.49 -0.35 3.94 16 33 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 LS Contribution 283.48 15.07 4.27 4.27 Total: -1.00 -28.53 283.48 -8.28 -36.81 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.56 Total: 4.13 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: -1.92 Total: -31.11 kcal Atomic # 7 Polarization: -21.38 SS G_CDS: 0.62 Total: -20.76 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.20 Total: -6.06 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.46 Total: -1.14 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.53 -8.28 -36.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396308703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.008 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds