Wall clock time and date at job start Mon Mar 30 2020 06:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46832 * 2 1 4 4 C 1.37473 * 119.78804 * 265.68420 * 3 2 1 5 5 C 1.38571 * 120.31351 * 180.02562 * 4 3 2 6 6 C 1.38136 * 120.12613 * 0.02562 * 5 4 3 7 7 O 1.35926 * 119.86543 * 180.02562 * 6 5 4 8 8 C 1.42892 * 117.00165 * 359.97438 * 7 6 5 9 9 C 1.40241 * 120.26757 * 359.97438 * 6 5 4 10 10 S 1.75775 * 130.19394 * 180.29000 * 9 6 5 11 11 C 1.69980 * 93.22721 * 180.08221 * 10 9 6 12 12 C 1.36458 * 111.93253 * 359.64641 * 11 10 9 13 13 C 1.40806 * 123.30340 * 180.28938 * 12 11 10 14 14 H 1.07996 * 120.00103 * 150.24561 * 13 12 11 15 15 C 1.39703 * 119.99778 * 330.25126 * 13 12 11 16 16 N 1.31083 * 120.00035 * 351.10156 * 15 13 12 17 17 Si 1.86800 * 119.99881 * 171.10396 * 15 13 12 18 18 H 1.48504 * 109.46933 * 59.99861 * 17 15 13 19 19 H 1.48499 * 109.47022 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47020 * 299.99887 * 17 15 13 21 21 C 1.39239 * 119.59594 * 0.02562 * 9 6 5 22 22 H 1.08997 * 109.47334 * 59.99902 * 1 2 3 23 23 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47261 * 300.00038 * 1 2 3 25 25 H 1.08997 * 109.46867 * 240.00198 * 2 1 3 26 26 H 1.08998 * 109.47081 * 119.99171 * 2 1 3 27 27 H 1.08001 * 119.84034 * 0.02736 * 4 3 2 28 28 H 1.08006 * 119.93348 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47464 * 179.97438 * 8 7 6 30 30 H 1.08999 * 109.47152 * 299.99812 * 8 7 6 31 31 H 1.09002 * 109.47256 * 59.99918 * 8 7 6 32 32 H 1.07998 * 124.03591 * 179.91511 * 11 10 9 33 33 H 0.96996 * 119.99803 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3445 2.0348 -1.1897 5 6 2.8077 3.3408 -1.2023 6 6 2.9592 4.0342 -0.0173 7 8 3.4134 5.3151 -0.0359 8 6 3.7142 5.8783 -1.3142 9 6 2.6450 3.4223 1.2049 10 16 2.7304 4.0518 2.8438 11 6 2.1701 2.6023 3.5324 12 6 1.9095 1.6553 2.5851 13 6 1.4286 0.3677 2.8909 14 1 0.8046 -0.1578 2.1832 15 6 1.7584 -0.2299 4.1098 16 7 2.6514 0.3262 4.8920 17 14 0.9271 -1.8214 4.6250 18 1 1.2116 -2.8765 3.6195 19 1 1.4487 -2.2463 5.9489 20 1 -0.5395 -1.6068 4.7160 21 6 2.1796 2.1100 1.2173 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 2.2282 1.4968 -2.1189 28 1 3.0516 3.8170 -2.1405 29 1 4.0656 6.9023 -1.1867 30 1 4.4899 5.2855 -1.7990 31 1 2.8163 5.8770 -1.9322 32 1 2.0322 2.4505 4.5928 33 1 2.8807 -0.0890 5.7381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396308703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:58 Heat of formation + Delta-G solvation = -27.441527 kcal Electronic energy + Delta-G solvation = -17416.764828 eV Core-core repulsion = 14725.839839 eV Total energy + Delta-G solvation = -2690.924989 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04544 -39.14764 -36.39720 -34.65900 -33.80898 -30.59202 -29.39924 -28.05923 -27.50756 -24.26155 -24.06634 -21.90975 -21.23141 -19.25892 -18.39202 -17.37236 -16.94448 -16.60760 -16.53682 -15.72649 -15.19238 -15.02880 -14.71434 -14.39152 -14.12174 -13.67793 -13.28720 -13.15635 -12.92776 -12.81607 -12.60148 -12.38945 -12.24212 -12.02864 -11.88122 -11.65338 -11.45695 -11.28160 -11.05568 -10.89879 -9.51216 -9.14548 -8.51269 -8.17591 -6.19564 0.21127 0.51033 1.18565 1.34650 1.40372 1.50813 1.95093 2.01498 2.26807 2.47351 2.84025 3.39407 4.03321 4.05462 4.25141 4.32267 4.46147 4.49666 4.51671 4.73041 4.75249 4.80939 4.86766 5.04129 5.14477 5.29814 5.31837 5.35205 5.45847 5.56449 5.66174 5.80245 6.03913 6.10679 6.54486 6.62139 6.92168 7.01993 8.50647 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.024304 B = 0.007761 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.774672 B = 3606.728710 C = 4587.220643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 C -0.085 4.085 4 C -0.096 4.096 5 C -0.200 4.200 6 C 0.132 3.868 7 O -0.341 6.341 8 C 0.019 3.981 9 C -0.191 4.191 10 S 0.050 5.950 11 C -0.376 4.376 12 C 0.063 3.937 13 C -0.466 4.466 14 H 0.107 0.893 15 C 0.021 3.979 16 N -0.845 5.845 17 Si 0.977 3.023 18 H -0.252 1.252 19 H -0.278 1.278 20 H -0.260 1.260 21 C -0.059 4.059 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.036 0.964 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 2.223 -12.731 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.087 4.087 4 C -0.118 4.118 5 C -0.221 4.221 6 C 0.082 3.918 7 O -0.255 6.255 8 C -0.075 4.075 9 C -0.306 4.306 10 S 0.313 5.687 11 C -0.512 4.512 12 C 0.054 3.946 13 C -0.499 4.499 14 H 0.125 0.875 15 C -0.190 4.190 16 N -0.473 5.473 17 Si 0.799 3.201 18 H -0.176 1.176 19 H -0.203 1.203 20 H -0.185 1.185 21 C -0.069 4.069 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.055 0.945 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.177 0.823 28 H 0.182 0.818 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.239 3.677 -11.611 12.182 hybrid contribution -0.420 -1.767 0.430 1.866 sum -0.659 1.910 -11.181 11.362 Atomic orbital electron populations 1.21703 0.94523 1.01983 1.01308 1.20689 0.96623 0.92003 1.03214 1.19903 1.00855 0.97197 0.90759 1.20888 0.99120 0.94394 0.97366 1.21229 1.07995 0.96563 0.96276 1.18350 0.97096 0.84490 0.91819 1.86042 1.80180 1.24801 1.34510 1.23351 1.01408 0.99838 0.82892 1.22202 1.12670 0.98998 0.96723 1.81604 1.73934 1.17512 0.95683 1.24184 1.27027 0.97431 1.02549 1.17729 0.94854 0.94337 0.87708 1.19664 1.28261 0.99618 1.02354 0.87549 1.26753 0.93971 1.02532 0.95764 1.70021 1.26366 1.40353 1.10602 0.85309 0.79247 0.77489 0.78103 1.17594 1.20298 1.18464 1.19661 0.99853 0.92175 0.95228 0.91810 0.91178 0.94524 0.89536 0.91123 0.82290 0.81769 0.86474 0.91494 0.91338 0.85568 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.04 71.98 0.65 -3.77 16 2 C -0.09 -3.12 5.34 29.85 0.16 -2.96 16 3 C -0.09 -3.42 5.18 -19.45 -0.10 -3.52 16 4 C -0.10 -3.09 9.63 22.17 0.21 -2.88 16 5 C -0.20 -6.27 9.02 22.32 0.20 -6.07 16 6 C 0.13 5.19 6.72 22.73 0.15 5.34 16 7 O -0.34 -11.89 10.47 -92.72 -0.97 -12.86 16 8 C 0.02 0.40 9.81 113.37 1.11 1.51 16 9 C -0.19 -9.12 6.39 23.00 0.15 -8.97 16 10 S 0.05 2.49 22.93 -56.49 -1.30 1.19 16 11 C -0.38 -21.43 9.46 67.40 0.64 -20.80 16 12 C 0.06 3.51 5.61 -20.87 -0.12 3.39 16 13 C -0.47 -24.83 7.33 23.25 0.17 -24.66 16 14 H 0.11 5.16 3.73 -2.91 -0.01 5.15 16 15 C 0.02 1.12 5.36 85.16 0.46 1.57 16 16 N -0.85 -47.20 11.13 21.80 0.24 -46.95 16 17 Si 0.98 39.34 29.57 68.60 2.03 41.37 16 18 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 19 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 21 C -0.06 -2.92 5.99 -20.25 -0.12 -3.04 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.04 1.39 6.92 -2.39 -0.02 1.37 16 25 H 0.09 2.44 8.05 -2.39 -0.02 2.42 16 26 H 0.07 2.95 5.46 -2.39 -0.01 2.93 16 27 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.16 3.63 6.25 -2.91 -0.02 3.61 16 29 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 31 H 0.07 1.21 7.65 -2.39 -0.02 1.19 16 32 H 0.13 7.71 6.71 -2.91 -0.02 7.69 16 33 H 0.28 14.36 8.30 -92.71 -0.77 13.59 16 Total: -1.00 -66.99 283.48 4.70 -62.29 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 1.14 Total: 19.80 kcal Atomic # 6 Polarization: -68.40 SS G_CDS: 3.56 Total: -64.84 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.24 Total: -46.95 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.97 Total: -12.86 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.30 Total: 1.19 kcal Total: -66.99 4.70 -62.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396308703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.847 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds