Wall clock time and date at job start Mon Mar 30 2020 06:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47364 * 2 1 4 4 C 1.37353 * 119.89913 * 265.00198 * 3 2 1 5 5 C 1.40588 * 120.39792 * 180.02562 * 4 3 2 6 6 C 1.46657 * 129.45923 * 179.97438 * 5 4 3 7 7 C 1.40789 * 123.29988 * 359.97438 * 6 5 4 8 8 H 1.07999 * 119.99892 * 339.15581 * 7 6 5 9 9 C 1.39696 * 120.00322 * 159.15565 * 7 6 5 10 10 N 1.31087 * 119.99958 * 344.91075 * 9 7 6 11 11 Si 1.86804 * 120.00158 * 164.90767 * 9 7 6 12 12 H 1.48500 * 109.47018 * 60.00261 * 11 9 7 13 13 H 1.48499 * 109.47210 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47184 * 300.00455 * 11 9 7 15 15 C 1.36455 * 113.40699 * 179.97438 * 6 5 4 16 16 S 1.69973 * 111.96461 * 0.02562 * 15 6 5 17 17 C 1.39402 * 119.33609 * 359.97438 * 5 4 3 18 18 C 1.39727 * 119.66299 * 359.97438 * 17 5 4 19 19 C 1.38165 * 120.32817 * 359.97438 * 18 17 5 20 20 O 1.35892 * 119.96645 * 180.02562 * 19 18 17 21 21 C 1.42898 * 117.00347 * 0.02562 * 20 19 18 22 22 H 1.08996 * 109.47383 * 299.99979 * 1 2 3 23 23 H 1.09006 * 109.47150 * 59.99685 * 1 2 3 24 24 H 1.08998 * 109.47235 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47423 * 240.00279 * 2 1 3 26 26 H 1.09000 * 109.47473 * 120.00575 * 2 1 3 27 27 H 1.07999 * 119.79960 * 0.27160 * 4 3 2 28 28 H 0.97003 * 119.99670 * 180.02562 * 10 9 7 29 29 H 1.07989 * 124.01753 * 180.02562 * 15 6 5 30 30 H 1.08005 * 119.84199 * 180.02562 * 18 17 5 31 31 H 1.09004 * 109.47069 * 180.02562 * 21 20 19 32 32 H 1.08999 * 109.47122 * 300.00131 * 21 20 19 33 33 H 1.08998 * 109.46995 * 60.00043 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3584 2.0317 -1.1862 5 6 2.8285 3.3566 -1.1983 6 6 3.2302 4.1927 -2.3343 7 6 3.1980 3.7491 -3.6701 8 1 3.1986 2.6913 -3.8880 9 6 3.1652 4.6771 -4.7138 10 7 2.8685 5.9300 -4.4677 11 14 3.5442 4.1327 -6.4601 12 1 2.5712 3.0907 -6.8759 13 1 3.4432 5.2981 -7.3748 14 1 4.9198 3.5765 -6.5176 15 6 3.6383 5.4427 -1.9698 16 16 3.5627 5.6708 -0.2872 17 6 2.9604 4.0456 0.0063 18 6 2.6241 3.4123 1.2056 19 6 2.1623 2.1101 1.2012 20 8 1.8368 1.5014 2.3718 21 6 1.9963 2.2674 3.5676 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.2491 1.4924 -2.1155 28 1 2.8454 6.5743 -5.1924 29 1 3.9698 6.1974 -2.6675 30 1 2.7247 3.9435 2.1405 31 1 1.7025 1.6646 4.4270 32 1 3.0397 2.5646 3.6723 33 1 1.3685 3.1569 3.5157 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396308845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:52 Heat of formation + Delta-G solvation = -19.574500 kcal Electronic energy + Delta-G solvation = -17055.952586 eV Core-core repulsion = 14365.368737 eV Total energy + Delta-G solvation = -2690.583849 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.71573 -37.36611 -35.01506 -33.48516 -31.43860 -29.24292 -28.19876 -26.76525 -25.73534 -23.40922 -21.66370 -21.07405 -19.13071 -17.83025 -16.58052 -16.09714 -15.43140 -15.38329 -14.76570 -14.39009 -13.81354 -13.43531 -13.24815 -12.83680 -12.60553 -12.23364 -12.06286 -11.72570 -11.61015 -11.39852 -11.14861 -11.05748 -10.81268 -10.75125 -10.53248 -10.15842 -9.89792 -9.48050 -9.32657 -9.07567 -8.42376 -7.07223 -6.70181 -6.60285 -4.26497 1.91257 1.95907 2.85452 3.00301 3.09828 3.13002 3.65330 3.73002 3.86866 4.01803 4.44722 5.22639 5.25607 5.31030 5.32124 5.35950 5.54051 5.63145 5.76867 5.89259 5.99348 6.09753 6.16183 6.25682 6.39672 6.48443 6.63145 6.80387 7.09329 7.14442 7.21735 7.36467 7.72902 7.90462 8.01293 8.51711 8.82001 8.92497 10.30448 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.006651 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.405503 B = 4209.045306 C = 5279.771157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 C -0.132 4.132 4 C -0.037 4.037 5 C -0.088 4.088 6 C 0.086 3.914 7 C -0.436 4.436 8 H 0.075 0.925 9 C 0.071 3.929 10 N -0.798 5.798 11 Si 0.910 3.090 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.362 4.362 16 S 0.034 5.966 17 C -0.109 4.109 18 C -0.187 4.187 19 C 0.122 3.878 20 O -0.317 6.317 21 C 0.029 3.971 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.125 0.875 28 H 0.277 0.723 29 H 0.160 0.840 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -6.343 8.620 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.136 4.136 4 C -0.057 4.057 5 C -0.098 4.098 6 C 0.077 3.923 7 C -0.469 4.469 8 H 0.093 0.907 9 C -0.146 4.146 10 N -0.424 5.424 11 Si 0.735 3.265 12 H -0.191 1.191 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.498 4.498 16 S 0.297 5.703 17 C -0.225 4.225 18 C -0.212 4.212 19 C 0.075 3.925 20 O -0.231 6.231 21 C -0.066 4.066 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.088 0.912 29 H 0.177 0.823 30 H 0.135 0.865 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.589 -5.004 9.330 10.706 hybrid contribution -0.115 -0.844 -1.724 1.923 sum -1.704 -5.848 7.606 9.744 Atomic orbital electron populations 1.21714 0.95526 1.00723 1.02072 1.20231 0.95624 0.92555 1.01943 1.18814 1.07681 0.96900 0.90240 1.20586 0.95812 0.93045 0.96273 1.19677 1.02355 0.94518 0.93226 1.17285 0.93103 0.90401 0.91486 1.18886 1.44616 0.94019 0.89398 0.90733 1.25772 0.92948 0.94624 1.01225 1.69885 1.34807 1.03360 1.34364 0.86336 0.80051 0.78923 0.81195 1.19148 1.20459 1.18997 1.24214 1.26190 1.05278 0.94071 1.81830 1.71459 1.09986 1.07063 1.22400 1.05069 0.99194 0.95834 1.20268 1.09563 0.94590 0.96759 1.18368 0.97966 0.91047 0.85103 1.86001 1.82815 1.41328 1.12991 1.22935 1.01198 0.96823 0.85675 0.92711 0.92752 0.93198 0.91686 0.91384 0.85693 0.91197 0.82325 0.86480 0.88957 0.93045 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.89 37.15 0.37 -1.59 16 2 C -0.07 -1.00 5.77 -27.89 -0.16 -1.16 16 3 C -0.13 -2.46 5.13 -104.62 -0.54 -3.00 16 4 C -0.04 -0.79 9.47 -39.02 -0.37 -1.16 16 5 C -0.09 -2.13 6.03 -105.18 -0.63 -2.77 16 6 C 0.09 2.31 5.69 -106.18 -0.60 1.71 16 7 C -0.44 -11.64 9.06 -38.07 -0.34 -11.99 16 8 H 0.07 1.88 7.66 -52.49 -0.40 1.48 16 9 C 0.07 1.81 5.31 -17.32 -0.09 1.71 16 10 N -0.80 -21.19 10.90 55.54 0.61 -20.58 16 11 Si 0.91 19.07 29.59 -169.99 -5.03 14.04 16 12 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 13 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 14 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 15 C -0.36 -9.63 9.51 30.09 0.29 -9.35 16 16 S 0.03 0.77 22.96 -107.50 -2.47 -1.70 16 17 C -0.11 -2.48 6.44 -38.59 -0.25 -2.73 16 18 C -0.19 -3.64 9.07 -39.05 -0.35 -3.99 16 19 C 0.12 2.24 6.65 -39.29 -0.26 1.98 16 20 O -0.32 -5.00 9.62 -19.40 -0.19 -5.19 16 21 C 0.03 0.34 9.81 101.05 0.99 1.33 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.90 8.04 -51.93 -0.42 0.49 16 26 H 0.07 0.98 7.69 -51.93 -0.40 0.58 16 27 H 0.13 2.48 7.83 -52.49 -0.41 2.07 16 28 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 29 H 0.16 4.46 6.31 -52.49 -0.33 4.13 16 30 H 0.12 1.98 6.25 -52.48 -0.33 1.65 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 33 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -28.61 292.18 -8.55 -37.16 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.91 Total: 2.88 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: -1.96 Total: -31.00 kcal Atomic # 7 Polarization: -21.19 SS G_CDS: 0.61 Total: -20.58 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.19 Total: -5.19 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.47 Total: -1.70 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.61 -8.55 -37.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396308845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.585 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds