Wall clock time and date at job start Mon Mar 30 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47364 * 2 1 4 4 C 1.37353 * 119.89913 * 265.00198 * 3 2 1 5 5 C 1.40588 * 120.39792 * 180.02562 * 4 3 2 6 6 C 1.46657 * 129.45923 * 179.97438 * 5 4 3 7 7 C 1.40789 * 123.29988 * 359.97438 * 6 5 4 8 8 H 1.07999 * 119.99892 * 339.15581 * 7 6 5 9 9 C 1.39696 * 120.00322 * 159.15565 * 7 6 5 10 10 N 1.31087 * 119.99958 * 344.91075 * 9 7 6 11 11 Si 1.86804 * 120.00158 * 164.90767 * 9 7 6 12 12 H 1.48500 * 109.47018 * 60.00261 * 11 9 7 13 13 H 1.48499 * 109.47210 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47184 * 300.00455 * 11 9 7 15 15 C 1.36455 * 113.40699 * 179.97438 * 6 5 4 16 16 S 1.69973 * 111.96461 * 0.02562 * 15 6 5 17 17 C 1.39402 * 119.33609 * 359.97438 * 5 4 3 18 18 C 1.39727 * 119.66299 * 359.97438 * 17 5 4 19 19 C 1.38165 * 120.32817 * 359.97438 * 18 17 5 20 20 O 1.35892 * 119.96645 * 180.02562 * 19 18 17 21 21 C 1.42898 * 117.00347 * 0.02562 * 20 19 18 22 22 H 1.08996 * 109.47383 * 299.99979 * 1 2 3 23 23 H 1.09006 * 109.47150 * 59.99685 * 1 2 3 24 24 H 1.08998 * 109.47235 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47423 * 240.00279 * 2 1 3 26 26 H 1.09000 * 109.47473 * 120.00575 * 2 1 3 27 27 H 1.07999 * 119.79960 * 0.27160 * 4 3 2 28 28 H 0.97003 * 119.99670 * 180.02562 * 10 9 7 29 29 H 1.07989 * 124.01753 * 180.02562 * 15 6 5 30 30 H 1.08005 * 119.84199 * 180.02562 * 18 17 5 31 31 H 1.09004 * 109.47069 * 180.02562 * 21 20 19 32 32 H 1.08999 * 109.47122 * 300.00131 * 21 20 19 33 33 H 1.08998 * 109.46995 * 60.00043 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3584 2.0317 -1.1862 5 6 2.8285 3.3566 -1.1983 6 6 3.2302 4.1927 -2.3343 7 6 3.1980 3.7491 -3.6701 8 1 3.1986 2.6913 -3.8880 9 6 3.1652 4.6771 -4.7138 10 7 2.8685 5.9300 -4.4677 11 14 3.5442 4.1327 -6.4601 12 1 2.5712 3.0907 -6.8759 13 1 3.4432 5.2981 -7.3748 14 1 4.9198 3.5765 -6.5176 15 6 3.6383 5.4427 -1.9698 16 16 3.5627 5.6708 -0.2872 17 6 2.9604 4.0456 0.0063 18 6 2.6241 3.4123 1.2056 19 6 2.1623 2.1101 1.2012 20 8 1.8368 1.5014 2.3718 21 6 1.9963 2.2674 3.5676 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.2491 1.4924 -2.1155 28 1 2.8454 6.5743 -5.1924 29 1 3.9698 6.1974 -2.6675 30 1 2.7247 3.9435 2.1405 31 1 1.7025 1.6646 4.4270 32 1 3.0397 2.5646 3.6723 33 1 1.3685 3.1569 3.5157 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396308845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:51 Heat of formation + Delta-G solvation = -34.444819 kcal Electronic energy + Delta-G solvation = -17056.597412 eV Core-core repulsion = 14365.368737 eV Total energy + Delta-G solvation = -2691.228675 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16523 -38.88417 -36.66917 -35.08234 -33.15908 -30.71356 -29.61497 -28.33469 -27.36892 -24.81001 -23.31706 -22.58731 -20.81832 -19.33128 -18.41747 -17.74715 -16.95330 -16.61780 -16.45426 -15.84772 -15.13817 -14.86456 -14.71597 -14.37056 -14.14280 -13.79035 -13.66325 -13.24982 -13.14073 -12.79517 -12.58653 -12.46603 -12.38464 -12.33420 -11.92320 -11.66740 -11.54012 -11.22829 -11.12865 -10.78417 -10.13528 -8.76292 -8.58165 -8.43384 -6.26813 0.24818 0.34343 1.12538 1.31242 1.38127 1.49679 1.91472 1.99243 2.23087 2.42797 2.73668 3.38724 3.86621 3.92789 4.22674 4.33564 4.43961 4.48061 4.56241 4.60841 4.66256 4.75818 4.77685 5.00308 5.09539 5.12146 5.21102 5.27615 5.39459 5.45476 5.60082 5.70453 5.89596 5.98534 6.50656 6.54395 6.84195 6.95842 8.39764 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.006651 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.405503 B = 4209.045306 C = 5279.771157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.125 4.125 4 C -0.049 4.049 5 C -0.127 4.127 6 C 0.063 3.937 7 C -0.469 4.469 8 H 0.079 0.921 9 C 0.026 3.974 10 N -0.831 5.831 11 Si 0.986 3.014 12 H -0.256 1.256 13 H -0.271 1.271 14 H -0.262 1.262 15 C -0.400 4.400 16 S 0.057 5.943 17 C -0.123 4.123 18 C -0.190 4.190 19 C 0.136 3.864 20 O -0.316 6.316 21 C 0.017 3.983 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.283 0.717 29 H 0.133 0.867 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.058 0.942 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 -8.525 9.896 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 C -0.129 4.129 4 C -0.069 4.069 5 C -0.136 4.136 6 C 0.054 3.946 7 C -0.501 4.501 8 H 0.097 0.903 9 C -0.187 4.187 10 N -0.458 5.458 11 Si 0.807 3.193 12 H -0.180 1.180 13 H -0.196 1.196 14 H -0.186 1.186 15 C -0.536 4.536 16 S 0.319 5.681 17 C -0.239 4.239 18 C -0.215 4.215 19 C 0.088 3.912 20 O -0.229 6.229 21 C -0.078 4.078 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.147 0.853 28 H 0.093 0.907 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.293 -7.195 10.640 13.048 hybrid contribution 0.035 -0.267 -1.910 1.929 sum -2.258 -7.463 8.730 11.705 Atomic orbital electron populations 1.21679 0.94298 1.02363 1.01289 1.20337 0.96540 0.90136 1.03222 1.19230 1.05661 0.98537 0.89482 1.20704 0.96332 0.92145 0.97674 1.19791 1.04797 0.96079 0.92927 1.17753 0.92807 0.91200 0.92800 1.19248 1.45980 0.94616 0.90281 0.90316 1.26745 0.91958 0.94391 1.05610 1.69989 1.35248 1.04593 1.35965 0.85192 0.79921 0.78802 0.75422 1.18008 1.19554 1.18608 1.24106 1.28066 1.05155 0.96255 1.81348 1.72136 1.10592 1.04007 1.22627 1.05557 0.98996 0.96676 1.20550 1.09118 0.95238 0.96624 1.18474 0.95954 0.90425 0.86350 1.86023 1.82036 1.41786 1.13100 1.23336 1.02030 0.97679 0.84734 0.93173 0.93857 0.90396 0.90512 0.90017 0.85336 0.90658 0.84901 0.83779 0.85401 0.92306 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.89 71.98 0.71 -2.69 16 2 C -0.07 -1.77 5.77 29.85 0.17 -1.59 16 3 C -0.13 -4.45 5.13 -19.86 -0.10 -4.55 16 4 C -0.05 -2.07 9.47 22.63 0.21 -1.85 16 5 C -0.13 -6.31 6.03 -20.23 -0.12 -6.44 16 6 C 0.06 3.57 5.69 -20.87 -0.12 3.46 16 7 C -0.47 -26.02 9.06 23.25 0.21 -25.81 16 8 H 0.08 4.11 7.66 -2.91 -0.02 4.09 16 9 C 0.03 1.38 5.31 85.16 0.45 1.83 16 10 N -0.83 -45.98 10.90 21.80 0.24 -45.74 16 11 Si 0.99 39.67 29.59 68.60 2.03 41.69 16 12 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 13 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 14 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 15 C -0.40 -22.53 9.51 67.40 0.64 -21.89 16 16 S 0.06 2.68 22.96 -56.49 -1.30 1.38 16 17 C -0.12 -5.64 6.44 22.91 0.15 -5.49 16 18 C -0.19 -7.11 9.07 22.61 0.21 -6.91 16 19 C 0.14 4.68 6.65 22.46 0.15 4.83 16 20 O -0.32 -8.78 9.62 -92.34 -0.89 -9.67 16 21 C 0.02 0.32 9.81 113.37 1.11 1.43 16 22 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.92 8.04 -2.38 -0.02 1.90 16 26 H 0.08 2.03 7.69 -2.39 -0.02 2.01 16 27 H 0.13 5.16 7.83 -2.91 -0.02 5.14 16 28 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 29 H 0.13 8.01 6.31 -2.92 -0.02 8.00 16 30 H 0.14 4.48 6.25 -2.91 -0.02 4.46 16 31 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.08 7.65 -2.39 -0.02 1.06 16 33 H 0.06 1.07 7.65 -2.39 -0.02 1.05 16 Total: -1.00 -64.59 292.18 4.87 -59.72 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.12 Total: 18.27 kcal Atomic # 6 Polarization: -69.34 SS G_CDS: 3.67 Total: -65.66 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.24 Total: -45.74 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.89 Total: -9.67 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.69 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.30 Total: 1.38 kcal Total: -64.59 4.87 -59.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396308845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.277 kcal (2) G-P(sol) polarization free energy of solvation -64.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds