Wall clock time and date at job start Mon Mar 30 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47421 * 2 1 4 4 C 1.40586 * 119.86845 * 274.08340 * 3 2 1 5 5 C 1.46660 * 129.46858 * 359.97438 * 4 3 2 6 6 C 1.40799 * 123.30225 * 0.02562 * 5 4 3 7 7 H 1.07998 * 120.00148 * 30.22500 * 6 5 4 8 8 C 1.39719 * 120.00082 * 210.22977 * 6 5 4 9 9 N 1.31075 * 119.99956 * 8.91690 * 8 6 5 10 10 Si 1.86794 * 120.00305 * 188.91457 * 8 6 5 11 11 H 1.48501 * 109.47225 * 59.99884 * 10 8 6 12 12 H 1.48497 * 109.47636 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46960 * 300.00223 * 10 8 6 14 14 C 1.36440 * 113.39723 * 180.02562 * 5 4 3 15 15 S 1.69977 * 111.95311 * 359.97438 * 14 5 4 16 16 C 1.39316 * 119.29866 * 179.97438 * 4 3 2 17 17 C 1.39853 * 119.69087 * 0.02562 * 16 4 3 18 18 C 1.37545 * 120.46210 * 359.97438 * 17 16 4 19 19 C 1.37902 * 119.86038 * 94.05424 * 3 2 1 20 20 O 1.35968 * 119.93409 * 0.02562 * 19 3 2 21 21 C 1.42898 * 116.99878 * 180.02562 * 20 19 3 22 22 H 1.09005 * 109.46885 * 299.99587 * 1 2 3 23 23 H 1.08992 * 109.47247 * 59.99802 * 1 2 3 24 24 H 1.08999 * 109.47162 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46885 * 240.00413 * 2 1 3 26 26 H 1.08997 * 109.47669 * 120.00371 * 2 1 3 27 27 H 0.96999 * 120.00158 * 180.02562 * 9 8 6 28 28 H 1.08003 * 124.02466 * 180.02562 * 14 5 4 29 29 H 1.08006 * 119.76930 * 180.27381 * 17 16 4 30 30 H 1.08000 * 119.92927 * 179.97438 * 18 17 16 31 31 H 1.08998 * 109.46956 * 299.99518 * 21 20 19 32 32 H 1.09002 * 109.47105 * 60.00175 * 21 20 19 33 33 H 1.09007 * 109.46989 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1839 2.1098 -1.2160 5 6 1.9198 1.6543 -2.5848 6 6 1.4411 0.3663 -2.8921 7 1 0.8085 -0.1564 -2.1901 8 6 1.7847 -0.2356 -4.1053 9 7 2.6875 0.3168 -4.8785 10 14 0.9575 -1.8276 -4.6255 11 1 -0.5077 -1.6115 -4.7345 12 1 1.4942 -2.2574 -5.9417 13 1 1.2286 -2.8799 -3.6134 14 6 2.1833 2.6011 -3.5313 15 16 2.7466 4.0491 -2.8420 16 6 2.6488 3.4230 -1.2022 17 6 2.9577 4.0357 0.0165 18 6 2.8052 3.3510 1.1996 19 6 2.3410 2.0399 1.1929 20 8 2.1918 1.3671 2.3650 21 6 2.5293 2.0687 3.5633 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.9258 -0.1008 -5.7209 28 1 2.0492 2.4489 -4.5921 29 1 3.3140 5.0552 0.0290 30 1 3.0468 3.8324 2.1357 31 1 3.5775 2.3656 3.5275 32 1 1.9030 2.9563 3.6533 33 1 2.3644 1.4194 4.4232 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396309072.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:00 Heat of formation + Delta-G solvation = -11.599621 kcal Electronic energy + Delta-G solvation = -17530.742342 eV Core-core repulsion = 14840.504309 eV Total energy + Delta-G solvation = -2690.238033 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.68491 -37.39961 -34.57798 -33.38585 -31.98093 -28.82205 -28.00194 -26.80588 -25.76325 -23.05162 -22.04905 -20.46014 -19.53481 -17.31213 -16.50133 -16.12164 -15.61114 -15.33821 -15.05182 -14.14517 -13.60177 -13.30762 -13.02637 -12.76529 -12.63039 -12.27097 -11.80160 -11.54865 -11.41941 -11.19753 -11.09387 -11.00150 -10.83046 -10.47671 -10.42925 -9.98170 -9.77202 -9.55995 -9.21687 -8.99704 -8.10799 -7.22933 -6.62678 -6.46782 -4.23379 1.81576 2.06392 2.90058 3.03164 3.12298 3.15201 3.73107 3.75206 3.84983 4.04706 4.49241 5.21204 5.27561 5.34220 5.38724 5.43589 5.60632 5.85955 5.92408 6.08349 6.18075 6.25240 6.37981 6.51968 6.69958 6.79013 6.89113 6.99278 7.05226 7.19876 7.29166 7.45323 7.72893 7.97702 8.00092 8.53802 8.84649 8.95197 10.38910 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.008582 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.458807 B = 3261.978284 C = 4486.663599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.066 4.066 4 C -0.024 4.024 5 C 0.082 3.918 6 C -0.447 4.447 7 H 0.093 0.907 8 C 0.069 3.931 9 N -0.807 5.807 10 Si 0.905 3.095 11 H -0.265 1.265 12 H -0.280 1.280 13 H -0.266 1.266 14 C -0.333 4.333 15 S 0.028 5.972 16 C -0.168 4.168 17 C -0.066 4.066 18 C -0.202 4.202 19 C 0.094 3.906 20 O -0.317 6.317 21 C 0.032 3.968 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.276 0.724 28 H 0.154 0.846 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 2.155 9.661 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.069 4.069 4 C -0.034 4.034 5 C 0.074 3.926 6 C -0.480 4.480 7 H 0.110 0.890 8 C -0.146 4.146 9 N -0.434 5.434 10 Si 0.731 3.269 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.191 1.191 14 C -0.469 4.469 15 S 0.290 5.710 16 C -0.283 4.283 17 C -0.090 4.090 18 C -0.223 4.223 19 C 0.047 3.953 20 O -0.231 6.231 21 C -0.064 4.064 22 H 0.062 0.938 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.117 0.883 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.171 0.829 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.315 3.247 8.726 9.315 hybrid contribution -0.465 -1.769 0.319 1.857 sum -0.780 1.477 9.045 9.198 Atomic orbital electron populations 1.21709 0.95639 1.00681 1.01696 1.20565 0.95643 0.92749 1.03209 1.18862 1.02699 0.96744 0.88563 1.19455 0.97792 0.91974 0.94170 1.17234 0.95397 0.93957 0.86061 1.19263 1.27475 0.99387 1.01919 0.88976 1.25773 0.93768 0.98958 0.96094 1.69878 1.24441 1.38615 1.10508 0.86402 0.80418 0.81797 0.78333 1.19023 1.20562 1.19076 1.24202 1.24441 0.94921 1.03348 1.81841 1.74091 1.19833 0.95201 1.22563 1.09187 0.98757 0.97806 1.20100 1.00211 0.98669 0.89984 1.20775 1.08710 0.94692 0.98082 1.18363 1.00784 0.90970 0.85190 1.86041 1.83447 1.41025 1.12623 1.22896 0.99838 0.97752 0.85919 0.93782 0.91633 0.93368 0.88269 0.92317 0.91357 0.82885 0.86778 0.86216 0.93287 0.93295 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.05 37.16 0.34 -2.23 16 2 C -0.08 -1.71 5.15 -27.88 -0.14 -1.85 16 3 C -0.07 -1.44 5.20 -103.86 -0.54 -1.98 16 4 C -0.02 -0.57 5.99 -105.21 -0.63 -1.20 16 5 C 0.08 2.17 5.60 -106.18 -0.60 1.58 16 6 C -0.45 -11.55 7.33 -38.06 -0.28 -11.83 16 7 H 0.09 2.23 3.77 -52.49 -0.20 2.03 16 8 C 0.07 1.76 5.36 -17.32 -0.09 1.66 16 9 N -0.81 -21.36 11.17 55.54 0.62 -20.74 16 10 Si 0.91 19.03 29.57 -169.99 -5.03 14.01 16 11 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 14 C -0.33 -8.71 9.45 30.08 0.28 -8.43 16 15 S 0.03 0.63 22.96 -107.50 -2.47 -1.83 16 16 C -0.17 -3.79 6.44 -38.58 -0.25 -4.04 16 17 C -0.07 -1.26 10.06 -39.23 -0.39 -1.66 16 18 C -0.20 -3.56 9.01 -39.52 -0.36 -3.91 16 19 C 0.09 1.81 6.64 -39.39 -0.26 1.55 16 20 O -0.32 -5.36 9.42 -19.64 -0.19 -5.55 16 21 C 0.03 0.37 9.81 101.05 0.99 1.36 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.06 1.31 6.94 -51.93 -0.36 0.95 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.10 2.18 5.45 -51.93 -0.28 1.90 16 26 H 0.06 1.10 7.37 -51.93 -0.38 0.71 16 27 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 28 H 0.15 4.22 6.75 -52.48 -0.35 3.87 16 29 H 0.11 1.85 8.06 -52.48 -0.42 1.42 16 30 H 0.12 1.68 6.29 -52.49 -0.33 1.35 16 31 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 32 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 282.19 15.07 4.25 4.25 Total: -1.00 -28.18 282.19 -8.26 -36.45 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.53 Total: 4.40 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: -1.93 Total: -30.98 kcal Atomic # 7 Polarization: -21.36 SS G_CDS: 0.62 Total: -20.74 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.19 Total: -5.55 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.01 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.47 Total: -1.83 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.18 -8.26 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396309072.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.846 kcal (2) G-P(sol) polarization free energy of solvation -28.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds