Wall clock time and date at job start Mon Mar 30 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47421 * 2 1 4 4 C 1.40586 * 119.86845 * 274.08340 * 3 2 1 5 5 C 1.46660 * 129.46858 * 359.97438 * 4 3 2 6 6 C 1.40799 * 123.30225 * 0.02562 * 5 4 3 7 7 H 1.07998 * 120.00148 * 30.22500 * 6 5 4 8 8 C 1.39719 * 120.00082 * 210.22977 * 6 5 4 9 9 N 1.31075 * 119.99956 * 8.91690 * 8 6 5 10 10 Si 1.86794 * 120.00305 * 188.91457 * 8 6 5 11 11 H 1.48501 * 109.47225 * 59.99884 * 10 8 6 12 12 H 1.48497 * 109.47636 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46960 * 300.00223 * 10 8 6 14 14 C 1.36440 * 113.39723 * 180.02562 * 5 4 3 15 15 S 1.69977 * 111.95311 * 359.97438 * 14 5 4 16 16 C 1.39316 * 119.29866 * 179.97438 * 4 3 2 17 17 C 1.39853 * 119.69087 * 0.02562 * 16 4 3 18 18 C 1.37545 * 120.46210 * 359.97438 * 17 16 4 19 19 C 1.37902 * 119.86038 * 94.05424 * 3 2 1 20 20 O 1.35968 * 119.93409 * 0.02562 * 19 3 2 21 21 C 1.42898 * 116.99878 * 180.02562 * 20 19 3 22 22 H 1.09005 * 109.46885 * 299.99587 * 1 2 3 23 23 H 1.08992 * 109.47247 * 59.99802 * 1 2 3 24 24 H 1.08999 * 109.47162 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46885 * 240.00413 * 2 1 3 26 26 H 1.08997 * 109.47669 * 120.00371 * 2 1 3 27 27 H 0.96999 * 120.00158 * 180.02562 * 9 8 6 28 28 H 1.08003 * 124.02466 * 180.02562 * 14 5 4 29 29 H 1.08006 * 119.76930 * 180.27381 * 17 16 4 30 30 H 1.08000 * 119.92927 * 179.97438 * 18 17 16 31 31 H 1.08998 * 109.46956 * 299.99518 * 21 20 19 32 32 H 1.09002 * 109.47105 * 60.00175 * 21 20 19 33 33 H 1.09007 * 109.46989 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1839 2.1098 -1.2160 5 6 1.9198 1.6543 -2.5848 6 6 1.4411 0.3663 -2.8921 7 1 0.8085 -0.1564 -2.1901 8 6 1.7847 -0.2356 -4.1053 9 7 2.6875 0.3168 -4.8785 10 14 0.9575 -1.8276 -4.6255 11 1 -0.5077 -1.6115 -4.7345 12 1 1.4942 -2.2574 -5.9417 13 1 1.2286 -2.8799 -3.6134 14 6 2.1833 2.6011 -3.5313 15 16 2.7466 4.0491 -2.8420 16 6 2.6488 3.4230 -1.2022 17 6 2.9577 4.0357 0.0165 18 6 2.8052 3.3510 1.1996 19 6 2.3410 2.0399 1.1929 20 8 2.1918 1.3671 2.3650 21 6 2.5293 2.0687 3.5633 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.9258 -0.1008 -5.7209 28 1 2.0492 2.4489 -4.5921 29 1 3.3140 5.0552 0.0290 30 1 3.0468 3.8324 2.1357 31 1 3.5775 2.3656 3.5275 32 1 1.9030 2.9563 3.6533 33 1 2.3644 1.4194 4.4232 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396309072.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:00 Heat of formation + Delta-G solvation = -26.547924 kcal Electronic energy + Delta-G solvation = -17531.390549 eV Core-core repulsion = 14840.504309 eV Total energy + Delta-G solvation = -2690.886240 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15183 -38.88870 -36.31752 -34.94913 -33.78038 -30.23606 -29.71657 -27.97575 -27.58783 -24.61518 -23.68750 -22.04287 -21.22631 -18.90586 -18.23622 -17.72088 -17.11862 -16.72204 -16.51855 -15.76065 -15.10965 -14.84888 -14.61793 -14.26321 -14.19445 -13.76310 -13.50677 -13.11266 -13.00058 -12.74621 -12.57173 -12.45199 -12.36046 -12.12652 -12.05957 -11.59010 -11.40180 -11.24690 -10.95777 -10.80796 -9.74269 -8.93223 -8.52941 -8.21259 -6.18884 0.17842 0.49026 1.21449 1.33597 1.39188 1.49408 1.93827 2.00499 2.26435 2.51895 2.81354 3.37931 3.89203 4.02342 4.31873 4.36237 4.47223 4.51132 4.60201 4.64166 4.70494 4.81053 4.82770 5.01905 5.18028 5.25205 5.31580 5.37777 5.39953 5.50901 5.57888 5.72390 5.93209 6.08675 6.59103 6.63758 6.92260 7.01463 8.49840 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.008582 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.458807 B = 3261.978284 C = 4486.663599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C -0.093 4.093 4 C -0.058 4.058 5 C 0.062 3.938 6 C -0.469 4.469 7 H 0.102 0.898 8 C 0.024 3.976 9 N -0.843 5.843 10 Si 0.974 3.026 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.255 1.255 14 C -0.372 4.372 15 S 0.050 5.950 16 C -0.188 4.188 17 C -0.066 4.066 18 C -0.185 4.185 19 C 0.104 3.896 20 O -0.329 6.329 21 C 0.018 3.982 22 H 0.055 0.945 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.279 0.721 28 H 0.125 0.875 29 H 0.148 0.852 30 H 0.167 0.833 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 2.137 12.821 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 C -0.095 4.095 4 C -0.068 4.068 5 C 0.052 3.948 6 C -0.502 4.502 7 H 0.120 0.880 8 C -0.188 4.188 9 N -0.472 5.472 10 Si 0.795 3.205 11 H -0.184 1.184 12 H -0.200 1.200 13 H -0.179 1.179 14 C -0.508 4.508 15 S 0.311 5.689 16 C -0.303 4.303 17 C -0.089 4.089 18 C -0.206 4.206 19 C 0.056 3.944 20 O -0.243 6.243 21 C -0.076 4.076 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.143 0.857 29 H 0.165 0.835 30 H 0.184 0.816 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.437 3.237 11.915 12.355 hybrid contribution -0.390 -1.720 -0.421 1.813 sum -0.828 1.517 11.494 11.623 Atomic orbital electron populations 1.21627 0.94443 1.01854 1.00969 1.20488 0.96671 0.92141 1.02422 1.19067 1.03934 0.97521 0.88992 1.19522 0.99909 0.93291 0.94044 1.17682 0.95033 0.94319 0.87719 1.19656 1.27934 0.99807 1.02766 0.87997 1.26695 0.93985 1.02406 0.95745 1.70000 1.25836 1.40318 1.10999 0.85357 0.79344 0.77620 0.78138 1.18437 1.20042 1.17940 1.24085 1.26863 0.97458 1.02378 1.81365 1.74334 1.17645 0.95551 1.22870 1.10123 0.98618 0.98691 1.20533 0.99247 1.00164 0.88936 1.21269 1.06110 0.93809 0.99392 1.18443 0.99002 0.91436 0.85481 1.86037 1.83183 1.41975 1.13111 1.23331 1.01016 0.98958 0.84333 0.92612 0.94081 0.91241 0.90949 0.90916 0.91114 0.85679 0.83472 0.81595 0.91896 0.91717 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.05 71.98 0.65 -4.08 16 2 C -0.08 -3.21 5.15 29.85 0.15 -3.05 16 3 C -0.09 -3.98 5.20 -19.37 -0.10 -4.09 16 4 C -0.06 -2.87 5.99 -20.25 -0.12 -2.99 16 5 C 0.06 3.42 5.60 -20.87 -0.12 3.31 16 6 C -0.47 -25.30 7.33 23.25 0.17 -25.12 16 7 H 0.10 5.11 3.77 -2.91 -0.01 5.10 16 8 C 0.02 1.23 5.36 85.16 0.46 1.69 16 9 N -0.84 -46.91 11.17 21.80 0.24 -46.67 16 10 Si 0.97 39.88 29.57 68.60 2.03 41.91 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 12 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 14 C -0.37 -20.65 9.45 67.40 0.64 -20.02 16 15 S 0.05 2.29 22.96 -56.49 -1.30 0.99 16 16 C -0.19 -8.45 6.44 22.92 0.15 -8.30 16 17 C -0.07 -2.31 10.06 22.50 0.23 -2.09 16 18 C -0.19 -5.76 9.01 22.31 0.20 -5.56 16 19 C 0.10 3.73 6.64 22.39 0.15 3.88 16 20 O -0.33 -9.88 9.42 -93.19 -0.88 -10.76 16 21 C 0.02 0.33 9.81 113.37 1.11 1.44 16 22 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 23 H 0.04 1.66 6.94 -2.39 -0.02 1.64 16 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.07 3.27 5.45 -2.38 -0.01 3.26 16 26 H 0.07 2.63 7.37 -2.39 -0.02 2.61 16 27 H 0.28 14.31 8.30 -92.71 -0.77 13.54 16 28 H 0.13 7.47 6.75 -2.91 -0.02 7.46 16 29 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.17 3.60 6.29 -2.91 -0.02 3.58 16 31 H 0.06 1.01 7.65 -2.39 -0.02 0.99 16 32 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 33 H 0.12 1.55 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -64.61 282.19 4.80 -59.81 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.14 Total: 19.70 kcal Atomic # 6 Polarization: -68.55 SS G_CDS: 3.57 Total: -64.99 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.24 Total: -46.67 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.88 Total: -10.76 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.30 Total: 0.99 kcal Total: -64.61 4.80 -59.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396309072.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.260 kcal (2) G-P(sol) polarization free energy of solvation -64.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds