Wall clock time and date at job start Mon Mar 30 2020 06:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.36985 * 122.47062 * 90.02577 * 3 2 1 5 5 C 1.39872 * 124.83073 * 359.97438 * 4 3 2 6 6 H 1.08003 * 119.99772 * 359.97438 * 5 4 3 7 7 C 1.40113 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.30806 * 120.00337 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99643 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47135 * 90.00350 * 9 7 5 11 11 H 1.48506 * 109.47143 * 209.99776 * 9 7 5 12 12 H 1.48497 * 109.47328 * 330.00260 * 9 7 5 13 13 S 1.75462 * 110.34238 * 179.97438 * 4 3 2 14 14 C 1.75992 * 91.78048 * 359.97438 * 13 4 3 15 15 C 1.39454 * 130.21610 * 179.97438 * 14 13 4 16 16 C 1.38273 * 120.24669 * 179.28328 * 15 14 13 17 17 O 1.35797 * 119.94853 * 180.22087 * 16 15 14 18 18 C 1.42900 * 116.99996 * 180.45188 * 17 16 15 19 19 C 1.39549 * 120.10334 * 0.67321 * 16 15 14 20 20 C 1.35755 * 120.57924 * 359.55170 * 19 16 15 21 21 C 1.39718 * 122.47609 * 269.73970 * 3 2 1 22 22 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 23 23 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 25 25 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 26 26 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 27 27 H 0.96997 * 120.00313 * 180.02562 * 8 7 5 28 28 H 1.07998 * 119.87448 * 359.97438 * 15 14 13 29 29 H 1.08999 * 109.46778 * 300.00236 * 18 17 16 30 30 H 1.09002 * 109.47115 * 60.00047 * 18 17 16 31 31 H 1.08991 * 109.46821 * 180.02562 * 18 17 16 32 32 H 1.07995 * 119.70817 * 179.52207 * 19 16 15 33 33 H 1.07998 * 119.71988 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2780 2.1140 1.1557 5 6 2.0981 1.6052 2.4461 6 1 1.7403 0.5954 2.5833 7 6 2.3812 2.4057 3.5606 8 7 2.8132 3.6291 3.3944 9 14 2.1403 1.7262 5.2839 10 1 3.3963 1.0791 5.7409 11 1 1.7897 2.8343 6.2084 12 1 1.0435 0.7252 5.2725 13 16 2.8504 3.7312 0.7870 14 6 2.7453 3.4331 -0.9443 15 6 3.0406 4.2682 -2.0213 16 6 2.8949 3.8106 -3.3179 17 8 3.1885 4.6275 -4.3622 18 6 3.0059 4.0934 -5.6750 19 6 2.4377 2.5136 -3.5552 20 6 2.1403 1.6861 -2.5209 21 6 2.2875 2.1264 -1.1787 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.0095 4.1832 4.1660 28 1 3.3950 5.2725 -1.8419 29 1 3.6404 3.2163 -5.8019 30 1 1.9622 3.8094 -5.8098 31 1 3.2761 4.8470 -6.4146 32 1 2.3189 2.1654 -4.5706 33 1 1.7871 0.6853 -2.7205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396309093.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:58 Heat of formation + Delta-G solvation = -32.540562 kcal Electronic energy + Delta-G solvation = -17003.821305 eV Core-core repulsion = 14312.675205 eV Total energy + Delta-G solvation = -2691.146100 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17595 -37.34387 -35.03338 -33.44880 -30.80357 -29.88575 -28.72288 -26.87074 -25.00957 -23.09793 -21.46106 -21.06449 -18.51035 -17.73697 -17.15491 -15.75301 -15.12994 -15.06498 -15.01274 -14.26253 -13.62635 -13.16661 -12.88764 -12.64041 -12.43630 -12.31260 -12.02073 -11.77587 -11.65743 -11.34912 -11.22227 -10.75864 -10.66741 -10.61066 -10.47136 -10.04279 -9.77122 -9.51806 -9.06834 -8.98823 -8.32372 -7.15568 -7.10826 -6.33149 -4.56467 2.09706 2.35264 2.81844 2.85977 2.91784 3.21322 3.54300 3.59833 3.84270 4.09682 4.63711 5.03365 5.39522 5.47295 5.63853 5.71819 5.78076 6.05713 6.11523 6.34376 6.42897 6.45199 6.61192 6.69534 6.70049 6.87663 6.96225 7.12659 7.14016 7.28432 7.34043 7.55758 7.67962 7.80725 8.01315 8.25116 8.39474 8.49172 9.68474 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.030605 B = 0.006172 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.675360 B = 4535.584564 C = 5355.678605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.020 4.020 3 C -0.326 4.326 4 C 0.057 3.943 5 C -0.382 4.382 6 H 0.100 0.900 7 C 0.053 3.947 8 N -0.780 5.780 9 Si 0.935 3.065 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.257 1.257 13 S 0.143 5.857 14 C -0.234 4.234 15 C -0.084 4.084 16 C 0.040 3.960 17 O -0.328 6.328 18 C 0.036 3.964 19 C -0.180 4.180 20 C -0.116 4.116 21 C 0.002 3.998 22 H 0.043 0.957 23 H 0.033 0.967 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.300 0.700 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 -1.428 -4.489 4.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.060 4.060 3 C -0.333 4.333 4 C -0.062 4.062 5 C -0.416 4.416 6 H 0.118 0.882 7 C -0.168 4.168 8 N -0.407 5.407 9 Si 0.758 3.242 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.180 1.180 13 S 0.406 5.594 14 C -0.349 4.349 15 C -0.107 4.107 16 C -0.005 4.005 17 O -0.244 6.244 18 C -0.060 4.060 19 C -0.201 4.201 20 C -0.136 4.136 21 C -0.006 4.006 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.253 0.195 -3.442 3.457 hybrid contribution -0.585 -1.600 -0.414 1.753 sum -0.838 -1.405 -3.856 4.189 Atomic orbital electron populations 1.21750 0.97683 0.98913 1.01458 1.19541 0.93633 0.93442 0.99385 1.18186 1.26516 0.98591 0.90034 1.21222 0.94975 0.94258 0.95794 1.19278 1.33477 1.00329 0.88488 0.88205 1.26287 0.92716 0.94265 1.03484 1.68618 1.30125 1.07304 1.34608 0.85805 0.80144 0.79606 0.78607 1.18860 1.19664 1.18018 1.84896 1.70334 1.14550 0.89658 1.23441 1.11543 0.98181 1.01755 1.19292 1.04411 0.98710 0.88303 1.18414 1.05099 0.90202 0.86800 1.85913 1.84456 1.40704 1.13281 1.22795 1.00478 0.99632 0.83060 1.20386 1.07047 0.94198 0.98506 1.20355 1.03401 0.98531 0.91273 1.17802 0.97598 0.92364 0.92859 0.93802 0.94801 0.92880 0.94240 0.93034 0.88655 0.87268 0.93589 0.93588 0.89504 0.87450 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.89 37.16 0.37 -2.28 16 2 C -0.02 -0.43 5.65 -27.88 -0.16 -0.58 16 3 C -0.33 -7.88 5.20 -104.52 -0.54 -8.43 16 4 C 0.06 1.43 6.11 -39.42 -0.24 1.19 16 5 C -0.38 -9.20 8.82 -38.27 -0.34 -9.54 16 6 H 0.10 2.28 6.66 -52.48 -0.35 1.93 16 7 C 0.05 1.20 5.50 -17.29 -0.10 1.10 16 8 N -0.78 -18.14 10.58 55.56 0.59 -17.55 16 9 Si 0.94 16.87 29.56 -169.99 -5.03 11.84 16 10 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 11 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 12 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 13 S 0.14 3.53 20.12 -107.50 -2.16 1.37 16 14 C -0.23 -5.70 6.47 -38.31 -0.25 -5.95 16 15 C -0.08 -1.89 10.00 -39.12 -0.39 -2.28 16 16 C 0.04 0.84 6.69 -39.08 -0.26 0.58 16 17 O -0.33 -6.11 10.49 -19.10 -0.20 -6.31 16 18 C 0.04 0.48 9.81 101.05 0.99 1.48 16 19 C -0.18 -3.58 8.94 -39.98 -0.36 -3.93 16 20 C -0.12 -2.47 9.62 -39.02 -0.38 -2.85 16 21 C 0.00 0.04 5.84 -107.07 -0.63 -0.58 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.77 7.31 -51.93 -0.38 0.39 16 26 H 0.05 1.06 6.89 -51.93 -0.36 0.70 16 27 H 0.30 6.27 8.30 -40.82 -0.34 5.94 16 28 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 29 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 30 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.11 1.77 6.27 -52.49 -0.33 1.45 16 33 H 0.10 2.03 7.38 -52.49 -0.39 1.64 16 LS Contribution 289.35 15.07 4.36 4.36 Total: -1.00 -26.78 289.35 -8.56 -35.34 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.85 Total: 3.03 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: -2.27 Total: -32.08 kcal Atomic # 7 Polarization: -18.14 SS G_CDS: 0.59 Total: -17.55 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.20 Total: -6.31 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -2.16 Total: 1.37 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.78 -8.56 -35.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396309093.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.797 kcal (2) G-P(sol) polarization free energy of solvation -26.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds