Wall clock time and date at job start Mon Mar 30 2020 06:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.36985 * 122.47062 * 90.02577 * 3 2 1 5 5 C 1.39872 * 124.83073 * 359.97438 * 4 3 2 6 6 H 1.08003 * 119.99772 * 359.97438 * 5 4 3 7 7 C 1.40113 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.30806 * 120.00337 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99643 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47135 * 90.00350 * 9 7 5 11 11 H 1.48506 * 109.47143 * 209.99776 * 9 7 5 12 12 H 1.48497 * 109.47328 * 330.00260 * 9 7 5 13 13 S 1.75462 * 110.34238 * 179.97438 * 4 3 2 14 14 C 1.75992 * 91.78048 * 359.97438 * 13 4 3 15 15 C 1.39454 * 130.21610 * 179.97438 * 14 13 4 16 16 C 1.38273 * 120.24669 * 179.28328 * 15 14 13 17 17 O 1.35797 * 119.94853 * 180.22087 * 16 15 14 18 18 C 1.42900 * 116.99996 * 180.45188 * 17 16 15 19 19 C 1.39549 * 120.10334 * 0.67321 * 16 15 14 20 20 C 1.35755 * 120.57924 * 359.55170 * 19 16 15 21 21 C 1.39718 * 122.47609 * 269.73970 * 3 2 1 22 22 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 23 23 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 25 25 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 26 26 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 27 27 H 0.96997 * 120.00313 * 180.02562 * 8 7 5 28 28 H 1.07998 * 119.87448 * 359.97438 * 15 14 13 29 29 H 1.08999 * 109.46778 * 300.00236 * 18 17 16 30 30 H 1.09002 * 109.47115 * 60.00047 * 18 17 16 31 31 H 1.08991 * 109.46821 * 180.02562 * 18 17 16 32 32 H 1.07995 * 119.70817 * 179.52207 * 19 16 15 33 33 H 1.07998 * 119.71988 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2780 2.1140 1.1557 5 6 2.0981 1.6052 2.4461 6 1 1.7403 0.5954 2.5833 7 6 2.3812 2.4057 3.5606 8 7 2.8132 3.6291 3.3944 9 14 2.1403 1.7262 5.2839 10 1 3.3963 1.0791 5.7409 11 1 1.7897 2.8343 6.2084 12 1 1.0435 0.7252 5.2725 13 16 2.8504 3.7312 0.7870 14 6 2.7453 3.4331 -0.9443 15 6 3.0406 4.2682 -2.0213 16 6 2.8949 3.8106 -3.3179 17 8 3.1885 4.6275 -4.3622 18 6 3.0059 4.0934 -5.6750 19 6 2.4377 2.5136 -3.5552 20 6 2.1403 1.6861 -2.5209 21 6 2.2875 2.1264 -1.1787 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.0095 4.1832 4.1660 28 1 3.3950 5.2725 -1.8419 29 1 3.6404 3.2163 -5.8019 30 1 1.9622 3.8094 -5.8098 31 1 3.2761 4.8470 -6.4146 32 1 2.3189 2.1654 -4.5706 33 1 1.7871 0.6853 -2.7205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396309093.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:58 Heat of formation + Delta-G solvation = -45.404175 kcal Electronic energy + Delta-G solvation = -17004.379113 eV Core-core repulsion = 14312.675205 eV Total energy + Delta-G solvation = -2691.703908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.75161 -38.94825 -36.71015 -35.12165 -32.44545 -31.49357 -30.44337 -28.14048 -26.66725 -24.72674 -23.14560 -22.69705 -20.23089 -19.38173 -18.80210 -17.34236 -16.73617 -16.58158 -16.43771 -15.85086 -15.16165 -14.82394 -14.48039 -14.24941 -14.07166 -13.88447 -13.59842 -13.19808 -13.14115 -12.88455 -12.76858 -12.24848 -12.21083 -12.14243 -11.99912 -11.60068 -11.39844 -11.17993 -10.80664 -10.72828 -10.06256 -8.84229 -8.83793 -8.18082 -6.34459 0.37747 0.64118 1.33995 1.36699 1.43249 1.54232 1.87904 1.96237 2.16731 2.70891 2.90593 3.28222 4.03276 4.19659 4.41380 4.47547 4.47775 4.59737 4.71384 4.76284 4.80204 4.86264 4.95999 5.00668 5.12655 5.23151 5.32755 5.45631 5.54452 5.62406 5.66089 5.83401 5.99458 6.07535 6.26300 6.58332 6.68565 6.79219 8.03120 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.030605 B = 0.006172 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.675360 B = 4535.584564 C = 5355.678605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.019 4.019 3 C -0.341 4.341 4 C 0.028 3.972 5 C -0.409 4.409 6 H 0.105 0.895 7 C 0.016 3.984 8 N -0.808 5.808 9 Si 1.007 2.993 10 H -0.259 1.259 11 H -0.264 1.264 12 H -0.252 1.252 13 S 0.108 5.892 14 C -0.254 4.254 15 C -0.111 4.111 16 C 0.053 3.947 17 O -0.342 6.342 18 C 0.023 3.977 19 C -0.175 4.175 20 C -0.116 4.116 21 C -0.027 4.027 22 H 0.039 0.961 23 H 0.065 0.935 24 H 0.035 0.965 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.308 0.692 28 H 0.110 0.890 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.118 0.882 32 H 0.148 0.852 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 -2.648 -5.817 6.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.058 4.058 3 C -0.349 4.349 4 C -0.091 4.091 5 C -0.442 4.442 6 H 0.123 0.877 7 C -0.202 4.202 8 N -0.435 5.435 9 Si 0.825 3.175 10 H -0.183 1.183 11 H -0.188 1.188 12 H -0.175 1.175 13 S 0.370 5.630 14 C -0.369 4.369 15 C -0.134 4.134 16 C 0.007 3.993 17 O -0.258 6.258 18 C -0.071 4.071 19 C -0.195 4.195 20 C -0.136 4.136 21 C -0.035 4.035 22 H 0.059 0.941 23 H 0.084 0.916 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.166 0.834 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.761 -1.018 -4.805 4.970 hybrid contribution -0.390 -1.153 -0.268 1.247 sum -1.151 -2.171 -5.073 5.637 Atomic orbital electron populations 1.21641 0.96127 1.00644 1.00440 1.19573 0.94918 0.91603 0.99739 1.18623 1.26343 1.00045 0.89842 1.21570 0.96242 0.94327 0.96971 1.19549 1.34743 1.00981 0.88924 0.87707 1.27216 0.91684 0.94207 1.07049 1.68679 1.30424 1.08389 1.36030 0.84775 0.80177 0.79050 0.73459 1.18309 1.18840 1.17499 1.84754 1.71313 1.15724 0.91207 1.23585 1.12707 0.99088 1.01539 1.19455 1.05867 0.98952 0.89165 1.18539 1.03116 0.90728 0.86959 1.85912 1.84054 1.41059 1.14733 1.23220 1.01711 1.01378 0.80804 1.20778 1.05324 0.93295 1.00124 1.20659 1.02724 0.99800 0.90388 1.18149 0.98646 0.92454 0.94233 0.94138 0.91595 0.94545 0.92993 0.93398 0.87859 0.87144 0.92321 0.92326 0.86354 0.83401 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 9.89 71.98 0.71 -4.06 16 2 C -0.02 -0.77 5.65 29.85 0.17 -0.60 16 3 C -0.34 -16.78 5.20 -19.80 -0.10 -16.88 16 4 C 0.03 1.45 6.11 22.37 0.14 1.59 16 5 C -0.41 -20.23 8.82 23.12 0.20 -20.03 16 6 H 0.11 4.89 6.66 -2.91 -0.02 4.87 16 7 C 0.02 0.73 5.50 85.30 0.47 1.20 16 8 N -0.81 -38.71 10.58 21.86 0.23 -38.47 16 9 Si 1.01 34.38 29.56 68.60 2.03 36.40 16 10 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 11 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 12 H -0.25 -8.31 7.11 99.48 0.71 -7.60 16 13 S 0.11 5.60 20.12 -56.49 -1.14 4.47 16 14 C -0.25 -12.74 6.47 23.10 0.15 -12.59 16 15 C -0.11 -5.08 10.00 22.57 0.23 -4.85 16 16 C 0.05 2.12 6.69 22.59 0.15 2.27 16 17 O -0.34 -11.91 10.49 -91.27 -0.96 -12.87 16 18 C 0.02 0.53 9.81 113.37 1.11 1.64 16 19 C -0.17 -6.43 8.94 22.01 0.20 -6.23 16 20 C -0.12 -4.75 9.62 22.63 0.22 -4.53 16 21 C -0.03 -1.31 5.84 -21.45 -0.13 -1.44 16 22 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.95 7.31 -2.39 -0.02 1.94 16 26 H 0.05 1.96 6.89 -2.39 -0.02 1.94 16 27 H 0.31 13.17 8.30 -92.71 -0.77 12.40 16 28 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 29 H 0.06 1.21 7.65 -2.39 -0.02 1.19 16 30 H 0.06 1.21 7.65 -2.39 -0.02 1.19 16 31 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.15 4.18 6.27 -2.91 -0.02 4.17 16 33 H 0.13 4.56 7.38 -2.91 -0.02 4.54 16 Total: -1.00 -59.36 289.35 4.80 -54.56 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 1.12 Total: 20.41 kcal Atomic # 6 Polarization: -68.02 SS G_CDS: 3.51 Total: -64.51 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.23 Total: -38.47 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.96 Total: -12.87 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.40 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.14 Total: 4.47 kcal Total: -59.36 4.80 -54.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396309093.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.157 kcal (2) G-P(sol) polarization free energy of solvation -59.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds