Wall clock time and date at job start Mon Mar 30 2020 06:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47110 * 2 1 4 4 C 1.37477 * 119.50249 * 264.72555 * 3 2 1 5 5 C 1.40374 * 120.20274 * 179.71461 * 4 3 2 6 6 C 1.40484 * 120.33011 * 180.25855 * 5 4 3 7 7 H 1.08003 * 119.99829 * 205.57431 * 6 5 4 8 8 C 1.39906 * 120.00043 * 25.57535 * 6 5 4 9 9 N 1.30914 * 120.00213 * 17.87586 * 8 6 5 10 10 Si 1.86801 * 119.99787 * 197.87981 * 8 6 5 11 11 H 1.48495 * 109.47088 * 94.50233 * 10 8 6 12 12 H 1.48498 * 109.46801 * 214.49909 * 10 8 6 13 13 H 1.48495 * 109.47074 * 334.49708 * 10 8 6 14 14 C 1.47971 * 119.33853 * 0.58628 * 5 4 3 15 15 C 1.40060 * 129.16333 * 179.71055 * 14 5 4 16 16 C 1.32673 * 115.79822 * 179.97438 * 15 14 5 17 17 S 1.75516 * 110.62430 * 359.97438 * 16 15 14 18 18 C 1.39435 * 118.11170 * 359.66762 * 14 5 4 19 19 C 1.38763 * 119.50546 * 85.00064 * 3 2 1 20 20 O 1.35691 * 119.35058 * 359.97438 * 19 3 2 21 21 C 1.42901 * 117.00380 * 90.00005 * 20 19 3 22 22 H 1.08996 * 109.46813 * 299.99861 * 1 2 3 23 23 H 1.09000 * 109.47179 * 59.99972 * 1 2 3 24 24 H 1.09000 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47179 * 120.00028 * 2 1 3 26 26 H 1.08999 * 109.47516 * 239.99931 * 2 1 3 27 27 H 1.08001 * 119.89345 * 0.02562 * 4 3 2 28 28 H 0.96997 * 120.00642 * 180.02562 * 9 8 6 29 29 H 1.07998 * 122.09999 * 359.97438 * 15 14 5 30 30 H 1.07997 * 124.68743 * 179.97438 * 16 15 14 31 31 H 1.09003 * 109.46917 * 60.00157 * 21 20 19 32 32 H 1.09002 * 109.47501 * 179.97438 * 21 20 19 33 33 H 1.09002 * 109.47104 * 300.00613 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3617 2.0225 -1.1914 5 6 2.8254 3.3473 -1.2091 6 6 3.1576 3.9665 -2.4256 7 1 3.8712 4.7771 -2.4417 8 6 2.5641 3.5332 -3.6161 9 7 1.4690 2.8168 -3.5786 10 14 3.3343 3.9768 -5.2591 11 1 4.2231 2.8732 -5.7031 12 1 2.2640 4.1864 -6.2669 13 1 4.1279 5.2234 -5.1132 14 6 2.9677 4.0827 0.0670 15 6 3.4108 5.3929 0.2883 16 6 3.4333 5.7887 1.5544 17 16 2.8796 4.5036 2.6139 18 6 2.6247 3.4236 1.2469 19 6 2.1609 2.1003 1.2031 20 8 1.8311 1.4726 2.3599 21 6 2.8690 0.7491 3.0244 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.2586 1.4758 -2.1171 28 1 1.0576 2.5161 -4.4040 29 1 3.7149 6.0402 -0.5209 30 1 3.7488 6.7665 1.8871 31 1 3.6796 1.4309 3.2819 32 1 2.4723 0.2971 3.9334 33 1 3.2471 -0.0320 2.3648 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396310395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:30 Heat of formation + Delta-G solvation = -15.828245 kcal Electronic energy + Delta-G solvation = -17465.804715 eV Core-core repulsion = 14775.383316 eV Total energy + Delta-G solvation = -2690.421399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.82201 -36.77780 -34.80439 -33.95741 -31.48390 -29.43779 -27.54225 -26.61170 -24.66902 -23.22355 -21.74658 -20.56361 -19.12182 -17.55571 -16.95286 -15.75203 -15.08737 -14.92865 -14.65212 -13.86303 -13.71694 -13.28840 -13.12728 -12.68042 -12.37700 -12.28809 -11.87099 -11.61885 -11.45882 -11.29093 -11.17566 -10.87050 -10.71825 -10.44752 -10.38087 -9.89795 -9.72514 -9.60926 -9.28251 -8.91901 -8.18838 -7.28817 -7.09350 -6.73166 -4.53502 1.87805 2.48513 2.67312 2.89617 2.93859 2.95438 3.09730 3.52602 3.67227 4.20080 4.86031 5.34113 5.69139 5.76694 5.86504 5.89552 5.95731 6.10088 6.13821 6.34326 6.36069 6.45396 6.50775 6.55673 6.74024 6.86096 6.92561 7.03090 7.09147 7.26457 7.40070 7.68514 7.76934 7.91684 8.24760 8.43999 8.48340 8.80521 9.77205 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.008711 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.308319 B = 3213.562978 C = 4527.263087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 C -0.032 4.032 4 C -0.185 4.185 5 C 0.154 3.846 6 C -0.423 4.423 7 H 0.088 0.912 8 C 0.072 3.928 9 N -0.760 5.760 10 Si 0.916 3.084 11 H -0.264 1.264 12 H -0.273 1.273 13 H -0.258 1.258 14 C -0.189 4.189 15 C -0.058 4.058 16 C -0.279 4.279 17 S 0.011 5.989 18 C -0.075 4.075 19 C -0.036 4.036 20 O -0.324 6.324 21 C 0.027 3.973 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.126 0.874 28 H 0.289 0.711 29 H 0.125 0.875 30 H 0.145 0.855 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 -2.074 2.483 3.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.035 4.035 4 C -0.207 4.207 5 C 0.149 3.851 6 C -0.450 4.450 7 H 0.106 0.894 8 C -0.151 4.151 9 N -0.382 5.382 10 Si 0.740 3.260 11 H -0.188 1.188 12 H -0.198 1.198 13 H -0.181 1.181 14 C -0.195 4.195 15 C -0.088 4.088 16 C -0.412 4.412 17 S 0.272 5.728 18 C -0.191 4.191 19 C -0.087 4.087 20 O -0.241 6.241 21 C -0.068 4.068 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.100 0.900 29 H 0.143 0.857 30 H 0.163 0.837 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.208 -2.178 3.973 4.690 hybrid contribution 0.700 0.400 -2.255 2.395 sum 1.909 -1.779 1.719 3.124 Atomic orbital electron populations 1.21640 0.95289 1.00088 1.02457 1.20342 0.95995 0.93817 1.00796 1.19509 0.96981 0.94587 0.92430 1.20793 1.08968 0.94909 0.95989 1.18461 0.86839 0.90301 0.89498 1.19644 1.19815 1.14800 0.90706 0.89431 1.26116 0.93554 0.93243 1.02147 1.69869 1.12768 1.24282 1.31294 0.86139 0.79855 0.80412 0.79638 1.18850 1.19809 1.18117 1.19006 1.13194 0.94042 0.93240 1.19702 0.98116 0.95254 0.95724 1.24566 1.17442 1.02771 0.96400 1.83523 1.71688 1.06541 1.11020 1.22562 1.03772 0.97452 0.95276 1.16977 1.17662 0.89571 0.84470 1.86081 1.34298 1.67380 1.36356 1.22889 0.92262 0.95381 0.96316 0.92468 0.92485 0.93846 0.92356 0.92266 0.85667 0.89980 0.85749 0.83737 0.94836 0.90766 0.94733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.89 37.16 0.37 -2.08 16 2 C -0.07 -1.38 5.73 -27.88 -0.16 -1.54 16 3 C -0.03 -0.73 5.12 -104.70 -0.54 -1.27 16 4 C -0.19 -4.55 8.24 -39.06 -0.32 -4.87 16 5 C 0.15 3.93 5.75 -104.26 -0.60 3.33 16 6 C -0.42 -10.27 8.80 -38.11 -0.34 -10.61 16 7 H 0.09 2.03 7.52 -52.48 -0.39 1.64 16 8 C 0.07 1.63 5.12 -17.32 -0.09 1.55 16 9 N -0.76 -17.80 11.02 55.55 0.61 -17.18 16 10 Si 0.92 16.86 29.60 -169.99 -5.03 11.83 16 11 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 12 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 13 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 14 C -0.19 -4.66 6.02 -104.78 -0.63 -5.29 16 15 C -0.06 -1.29 9.75 -40.79 -0.40 -1.68 16 16 C -0.28 -5.61 11.11 28.84 0.32 -5.29 16 17 S 0.01 0.24 23.26 -107.50 -2.50 -2.26 16 18 C -0.08 -1.81 6.43 -38.36 -0.25 -2.06 16 19 C -0.04 -0.85 5.72 -38.61 -0.22 -1.07 16 20 O -0.32 -6.96 9.57 -18.77 -0.18 -7.14 16 21 C 0.03 0.47 10.74 101.05 1.09 1.56 16 22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 1.05 6.25 -51.93 -0.32 0.72 16 26 H 0.06 1.07 8.02 -51.93 -0.42 0.65 16 27 H 0.13 3.10 6.20 -52.49 -0.33 2.77 16 28 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 29 H 0.12 2.53 7.72 -52.49 -0.41 2.12 16 30 H 0.14 2.44 8.06 -52.49 -0.42 2.02 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.57 7.10 -51.93 -0.37 0.20 16 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -26.40 293.07 -8.35 -34.75 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -3.91 Total: 4.93 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: -1.76 Total: -29.34 kcal Atomic # 7 Polarization: -17.80 SS G_CDS: 0.61 Total: -17.18 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.18 Total: -7.14 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.50 Total: -2.26 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.40 -8.35 -34.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396310395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.927 kcal (2) G-P(sol) polarization free energy of solvation -26.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds