Wall clock time and date at job start Mon Mar 30 2020 06:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47110 * 2 1 4 4 C 1.37477 * 119.50249 * 264.72555 * 3 2 1 5 5 C 1.40374 * 120.20274 * 179.71461 * 4 3 2 6 6 C 1.40484 * 120.33011 * 180.25855 * 5 4 3 7 7 H 1.08003 * 119.99829 * 205.57431 * 6 5 4 8 8 C 1.39906 * 120.00043 * 25.57535 * 6 5 4 9 9 N 1.30914 * 120.00213 * 17.87586 * 8 6 5 10 10 Si 1.86801 * 119.99787 * 197.87981 * 8 6 5 11 11 H 1.48495 * 109.47088 * 94.50233 * 10 8 6 12 12 H 1.48498 * 109.46801 * 214.49909 * 10 8 6 13 13 H 1.48495 * 109.47074 * 334.49708 * 10 8 6 14 14 C 1.47971 * 119.33853 * 0.58628 * 5 4 3 15 15 C 1.40060 * 129.16333 * 179.71055 * 14 5 4 16 16 C 1.32673 * 115.79822 * 179.97438 * 15 14 5 17 17 S 1.75516 * 110.62430 * 359.97438 * 16 15 14 18 18 C 1.39435 * 118.11170 * 359.66762 * 14 5 4 19 19 C 1.38763 * 119.50546 * 85.00064 * 3 2 1 20 20 O 1.35691 * 119.35058 * 359.97438 * 19 3 2 21 21 C 1.42901 * 117.00380 * 90.00005 * 20 19 3 22 22 H 1.08996 * 109.46813 * 299.99861 * 1 2 3 23 23 H 1.09000 * 109.47179 * 59.99972 * 1 2 3 24 24 H 1.09000 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47179 * 120.00028 * 2 1 3 26 26 H 1.08999 * 109.47516 * 239.99931 * 2 1 3 27 27 H 1.08001 * 119.89345 * 0.02562 * 4 3 2 28 28 H 0.96997 * 120.00642 * 180.02562 * 9 8 6 29 29 H 1.07998 * 122.09999 * 359.97438 * 15 14 5 30 30 H 1.07997 * 124.68743 * 179.97438 * 16 15 14 31 31 H 1.09003 * 109.46917 * 60.00157 * 21 20 19 32 32 H 1.09002 * 109.47501 * 179.97438 * 21 20 19 33 33 H 1.09002 * 109.47104 * 300.00613 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3617 2.0225 -1.1914 5 6 2.8254 3.3473 -1.2091 6 6 3.1576 3.9665 -2.4256 7 1 3.8712 4.7771 -2.4417 8 6 2.5641 3.5332 -3.6161 9 7 1.4690 2.8168 -3.5786 10 14 3.3343 3.9768 -5.2591 11 1 4.2231 2.8732 -5.7031 12 1 2.2640 4.1864 -6.2669 13 1 4.1279 5.2234 -5.1132 14 6 2.9677 4.0827 0.0670 15 6 3.4108 5.3929 0.2883 16 6 3.4333 5.7887 1.5544 17 16 2.8796 4.5036 2.6139 18 6 2.6247 3.4236 1.2469 19 6 2.1609 2.1003 1.2031 20 8 1.8311 1.4726 2.3599 21 6 2.8690 0.7491 3.0244 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.2586 1.4758 -2.1171 28 1 1.0576 2.5161 -4.4040 29 1 3.7149 6.0402 -0.5209 30 1 3.7488 6.7665 1.8871 31 1 3.6796 1.4309 3.2819 32 1 2.4723 0.2971 3.9334 33 1 3.2471 -0.0320 2.3648 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396310395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:30 Heat of formation + Delta-G solvation = -28.207584 kcal Electronic energy + Delta-G solvation = -17466.341524 eV Core-core repulsion = 14775.383316 eV Total energy + Delta-G solvation = -2690.958208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52584 -38.45753 -36.50240 -35.62266 -33.11799 -31.17556 -29.22302 -28.13684 -26.35581 -24.86007 -23.43030 -22.24953 -20.84708 -19.28881 -18.63345 -17.42113 -16.70591 -16.62315 -16.22844 -15.46532 -15.29053 -14.90960 -14.67353 -14.28233 -14.04187 -13.88583 -13.49605 -13.20902 -13.01876 -12.92085 -12.69987 -12.49035 -12.22785 -12.04100 -11.89504 -11.58216 -11.37345 -11.30619 -10.97374 -10.55806 -9.94365 -9.02380 -8.80756 -8.45544 -6.33712 0.14817 0.74191 0.96537 1.36867 1.39748 1.46783 1.52577 1.78232 2.13932 2.49619 3.21980 3.56744 4.12214 4.26162 4.28723 4.49520 4.60818 4.62303 4.67089 4.76223 4.77721 4.83493 4.96359 5.00982 5.05630 5.23846 5.28534 5.33419 5.45299 5.52792 5.70414 5.91350 5.99879 6.11529 6.46046 6.68628 6.69824 7.09160 8.11632 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.008711 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.308319 B = 3213.562978 C = 4527.263087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 C -0.041 4.041 4 C -0.207 4.207 5 C 0.123 3.877 6 C -0.452 4.452 7 H 0.088 0.912 8 C 0.037 3.963 9 N -0.791 5.791 10 Si 0.988 3.012 11 H -0.259 1.259 12 H -0.265 1.265 13 H -0.255 1.255 14 C -0.211 4.211 15 C -0.085 4.085 16 C -0.257 4.257 17 S 0.042 5.958 18 C -0.111 4.111 19 C -0.042 4.042 20 O -0.336 6.336 21 C 0.024 3.976 22 H 0.044 0.956 23 H 0.038 0.962 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.298 0.702 29 H 0.135 0.865 30 H 0.184 0.816 31 H 0.028 0.972 32 H 0.109 0.891 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -2.018 3.047 4.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.107 4.107 3 C -0.044 4.044 4 C -0.229 4.229 5 C 0.118 3.882 6 C -0.478 4.478 7 H 0.106 0.894 8 C -0.183 4.183 9 N -0.414 5.414 10 Si 0.808 3.192 11 H -0.183 1.183 12 H -0.189 1.189 13 H -0.178 1.178 14 C -0.217 4.217 15 C -0.114 4.114 16 C -0.390 4.390 17 S 0.303 5.697 18 C -0.226 4.226 19 C -0.093 4.093 20 O -0.253 6.253 21 C -0.071 4.071 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.133 0.867 28 H 0.109 0.891 29 H 0.153 0.847 30 H 0.201 0.799 31 H 0.047 0.953 32 H 0.127 0.873 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.581 -2.133 4.563 5.279 hybrid contribution 0.572 0.391 -2.230 2.335 sum 2.153 -1.741 2.334 3.621 Atomic orbital electron populations 1.21561 0.94247 1.01871 1.00949 1.20392 0.96775 0.91752 1.01775 1.19867 0.96341 0.96359 0.91857 1.20780 1.10755 0.95062 0.96258 1.18846 0.87791 0.91034 0.90515 1.19855 1.20776 1.15682 0.91511 0.89378 1.26936 0.93493 0.92752 1.05129 1.69902 1.13754 1.25022 1.32706 0.85082 0.78991 0.80121 0.75040 1.18342 1.18891 1.17831 1.19402 1.13599 0.95321 0.93419 1.19844 0.99737 0.94790 0.97064 1.25064 1.14562 1.03852 0.95490 1.83306 1.71089 1.05719 1.09569 1.22960 1.04588 0.98466 0.96633 1.17147 1.16949 0.89861 0.85302 1.86003 1.35937 1.67679 1.35721 1.23096 0.91571 0.95071 0.97353 0.93633 0.94239 0.90380 0.90933 0.91570 0.86737 0.89115 0.84718 0.79919 0.95285 0.87295 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 9.89 71.98 0.71 -3.80 16 2 C -0.07 -2.63 5.73 29.85 0.17 -2.46 16 3 C -0.04 -1.92 5.12 -19.92 -0.10 -2.03 16 4 C -0.21 -10.59 8.24 22.61 0.19 -10.40 16 5 C 0.12 6.52 5.75 -19.63 -0.11 6.40 16 6 C -0.45 -22.69 8.80 23.22 0.20 -22.48 16 7 H 0.09 4.22 7.52 -2.91 -0.02 4.20 16 8 C 0.04 1.69 5.12 85.23 0.44 2.13 16 9 N -0.79 -38.06 11.02 21.83 0.24 -37.82 16 10 Si 0.99 34.63 29.60 68.60 2.03 36.66 16 11 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 12 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 13 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 14 C -0.21 -10.63 6.02 -19.97 -0.12 -10.75 16 15 C -0.08 -3.73 9.75 21.54 0.21 -3.52 16 16 C -0.26 -9.81 11.11 66.65 0.74 -9.07 16 17 S 0.04 1.70 23.26 -56.49 -1.31 0.38 16 18 C -0.11 -5.38 6.43 23.06 0.15 -5.23 16 19 C -0.04 -2.00 5.72 22.90 0.13 -1.87 16 20 O -0.34 -14.11 9.57 -90.10 -0.86 -14.97 16 21 C 0.02 0.78 10.74 113.37 1.22 2.00 16 22 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.07 2.50 6.25 -2.39 -0.01 2.49 16 26 H 0.07 2.38 8.02 -2.39 -0.02 2.36 16 27 H 0.11 5.95 6.20 -2.91 -0.02 5.93 16 28 H 0.30 12.72 8.30 -92.71 -0.77 11.95 16 29 H 0.14 5.47 7.72 -2.91 -0.02 5.45 16 30 H 0.18 5.47 8.06 -2.91 -0.02 5.45 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.04 1.29 7.10 -2.39 -0.02 1.28 16 Total: -1.00 -57.99 293.07 5.04 -52.95 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 1.12 Total: 23.86 kcal Atomic # 6 Polarization: -64.89 SS G_CDS: 3.82 Total: -61.07 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.24 Total: -37.82 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.86 Total: -14.97 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.31 Total: 0.38 kcal Total: -57.99 5.04 -52.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396310395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.745 kcal (2) G-P(sol) polarization free energy of solvation -57.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds