Wall clock time and date at job start Mon Mar 30 2020 06:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.47100 * 2 1 4 4 S 1.69981 * 124.03083 * 272.85905 * 3 2 1 5 5 C 1.75793 * 93.22215 * 179.97438 * 4 3 2 6 6 C 1.39898 * 130.16227 * 180.02562 * 5 4 3 7 7 C 1.37649 * 120.49017 * 180.02562 * 6 5 4 8 8 C 1.38554 * 120.25288 * 359.89473 * 7 6 5 9 9 C 1.38021 * 120.19124 * 0.06098 * 8 7 6 10 10 O 1.35824 * 119.89799 * 179.97438 * 9 8 7 11 11 C 1.42902 * 117.00279 * 0.02562 * 10 9 8 12 12 C 1.39266 * 110.18482 * 359.97438 * 5 4 3 13 13 C 1.36475 * 124.03197 * 92.56203 * 3 2 1 14 14 C 1.40815 * 123.30287 * 0.03603 * 13 3 2 15 15 H 1.08003 * 120.00200 * 49.49303 * 14 13 3 16 16 C 1.39675 * 119.99949 * 229.48613 * 14 13 3 17 17 N 1.31095 * 119.99893 * 15.80172 * 16 14 13 18 18 Si 1.86798 * 120.00078 * 195.79209 * 16 14 13 19 19 H 1.48505 * 109.47241 * 60.00677 * 18 16 14 20 20 H 1.48502 * 109.47256 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47233 * 300.00456 * 18 16 14 22 22 H 1.09006 * 109.46693 * 59.99828 * 1 2 3 23 23 H 1.08994 * 109.47165 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47237 * 300.00072 * 1 2 3 25 25 H 1.09007 * 109.46557 * 119.99638 * 2 1 3 26 26 H 1.08994 * 109.46821 * 239.99623 * 2 1 3 27 27 H 1.07998 * 119.75899 * 359.97438 * 6 5 4 28 28 H 1.08005 * 119.87856 * 179.97438 * 7 6 5 29 29 H 1.07994 * 119.90414 * 180.02562 * 8 7 6 30 30 H 1.09003 * 109.47094 * 179.97438 * 11 10 9 31 31 H 1.08999 * 109.47163 * 300.00405 * 11 10 9 32 32 H 1.09001 * 109.46401 * 59.99897 * 11 10 9 33 33 H 0.96999 * 119.99771 * 174.47065 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 16 2.2832 2.3412 -1.4069 5 6 2.8281 3.7500 -0.5077 6 6 3.2467 5.0047 -0.9632 7 6 3.6377 5.9770 -0.0707 8 6 3.6186 5.7228 1.2912 9 6 3.2083 4.4919 1.7619 10 8 3.1923 4.2490 3.0981 11 6 3.6123 5.3120 3.9559 12 6 2.8061 3.4854 0.8595 13 6 2.3347 2.1241 1.1299 14 6 2.2092 1.5929 2.4279 15 1 2.6345 0.6276 2.6599 16 6 1.5349 2.3145 3.4157 17 7 0.7612 3.3184 3.0809 18 14 1.7355 1.8489 5.2135 19 1 3.1652 1.9641 5.5982 20 1 0.9209 2.7618 6.0552 21 1 1.2795 0.4503 5.4165 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 3.2640 5.2119 -2.0230 28 1 3.9595 6.9421 -0.4332 29 1 3.9262 6.4898 1.9864 30 1 3.5512 4.9866 4.9944 31 1 4.6409 5.5845 3.7199 32 1 2.9644 6.1759 3.8074 33 1 0.2308 3.7683 3.7571 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396310407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:02 Heat of formation + Delta-G solvation = -6.882078 kcal Electronic energy + Delta-G solvation = -17894.778697 eV Core-core repulsion = 15204.745232 eV Total energy + Delta-G solvation = -2690.033464 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.25487 -36.76423 -35.18734 -32.67191 -31.48096 -29.15967 -28.02666 -26.64987 -25.44873 -22.75743 -21.73355 -20.61129 -19.12279 -17.54227 -16.32090 -15.35798 -15.20258 -14.91871 -14.73648 -14.46806 -13.87971 -13.34580 -12.77846 -12.65488 -12.39292 -12.24021 -11.61920 -11.45852 -11.37681 -11.09547 -10.91419 -10.73319 -10.53980 -10.39841 -10.31045 -9.97641 -9.84355 -9.52196 -9.29016 -8.73891 -7.72564 -7.22126 -6.52769 -6.21057 -4.17122 1.95176 2.22511 2.82523 3.10730 3.16940 3.22837 3.63826 3.74996 4.15033 4.30075 4.70175 5.28960 5.48491 5.64293 5.67223 5.69744 5.91601 5.95277 6.09308 6.15281 6.24649 6.41209 6.46125 6.66846 6.76165 6.95442 7.05361 7.15968 7.19759 7.24041 7.34707 7.46103 7.60058 8.10576 8.37196 8.51858 8.87856 9.14167 10.55512 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.013087 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.549403 B = 2139.088752 C = 3707.673891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.006 4.006 3 C -0.364 4.364 4 S 0.049 5.951 5 C -0.109 4.109 6 C -0.145 4.145 7 C -0.083 4.083 8 C -0.255 4.255 9 C 0.205 3.795 10 O -0.266 6.266 11 C 0.022 3.978 12 C -0.070 4.070 13 C 0.148 3.852 14 C -0.472 4.472 15 H 0.076 0.924 16 C 0.111 3.889 17 N -0.802 5.802 18 Si 0.895 3.105 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.041 0.959 23 H 0.034 0.966 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.036 0.964 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.131 3.120 -1.146 4.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.046 4.046 3 C -0.480 4.480 4 S 0.313 5.687 5 C -0.225 4.225 6 C -0.169 4.169 7 C -0.103 4.103 8 C -0.277 4.277 9 C 0.157 3.843 10 O -0.177 6.177 11 C -0.074 4.074 12 C -0.080 4.080 13 C 0.138 3.862 14 C -0.505 4.505 15 H 0.094 0.906 16 C -0.106 4.106 17 N -0.429 5.429 18 Si 0.722 3.278 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.198 1.198 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.055 0.945 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.734 2.726 -2.437 4.565 hybrid contribution 0.242 0.614 2.556 2.640 sum 2.976 3.340 0.119 4.475 Atomic orbital electron populations 1.21700 0.96830 0.99059 1.01935 1.19376 0.94276 0.91264 0.99644 1.22916 1.26895 1.03354 0.94801 1.81701 1.72421 1.03521 1.11063 1.22390 1.05093 0.98393 0.96592 1.20136 1.06056 0.92124 0.98556 1.20403 0.99706 0.97833 0.92404 1.20761 1.13393 0.96951 0.96584 1.18724 0.91477 0.91576 0.82560 1.86469 1.80220 1.37211 1.13796 1.22939 0.98537 0.91421 0.94520 1.18988 1.03142 0.96163 0.89738 1.17064 0.88918 0.86826 0.93369 1.18550 1.34834 1.04301 0.92863 0.90594 1.25360 0.93156 0.92643 0.99397 1.69794 1.19397 1.18245 1.35491 0.86613 0.79126 0.78718 0.83388 1.19110 1.20893 1.19829 0.93988 0.94670 0.91972 0.91634 0.94523 0.87206 0.86857 0.86614 0.89667 0.93667 0.93420 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.90 37.16 0.37 -2.39 16 2 C -0.01 -0.13 6.06 -27.88 -0.17 -0.30 16 3 C -0.36 -8.83 5.56 -34.94 -0.19 -9.03 16 4 S 0.05 1.07 22.89 -107.50 -2.46 -1.39 16 5 C -0.11 -2.53 6.44 -38.58 -0.25 -2.77 16 6 C -0.14 -2.89 10.06 -39.18 -0.39 -3.28 16 7 C -0.08 -1.53 10.02 -39.68 -0.40 -1.92 16 8 C -0.25 -5.04 9.01 -39.54 -0.36 -5.40 16 9 C 0.21 4.78 6.28 -38.60 -0.24 4.54 16 10 O -0.27 -6.05 6.29 -19.19 -0.12 -6.17 16 11 C 0.02 0.38 9.81 101.05 0.99 1.37 16 12 C -0.07 -1.78 5.59 -105.09 -0.59 -2.37 16 13 C 0.15 3.90 5.19 -106.20 -0.55 3.35 16 14 C -0.47 -12.57 7.87 -38.07 -0.30 -12.86 16 15 H 0.08 2.00 7.53 -52.48 -0.40 1.61 16 16 C 0.11 2.83 3.18 -17.33 -0.06 2.77 16 17 N -0.80 -21.15 11.43 55.54 0.63 -20.52 16 18 Si 0.90 19.60 29.45 -169.99 -5.01 14.59 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 25 H 0.07 1.43 7.23 -51.92 -0.38 1.05 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.12 1.94 6.24 -52.49 -0.33 1.62 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 32 H 0.05 0.76 7.65 -51.93 -0.40 0.36 16 33 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -28.52 287.77 -8.74 -37.25 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -3.99 Total: 0.19 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -2.14 Total: -28.29 kcal Atomic # 7 Polarization: -21.15 SS G_CDS: 0.63 Total: -20.52 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.12 Total: -6.17 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.01 Total: 14.59 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.46 Total: -1.39 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.52 -8.74 -37.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396310407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.373 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds