Wall clock time and date at job start Mon Mar 30 2020 06:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.47100 * 2 1 4 4 S 1.69981 * 124.03083 * 272.85905 * 3 2 1 5 5 C 1.75793 * 93.22215 * 179.97438 * 4 3 2 6 6 C 1.39898 * 130.16227 * 180.02562 * 5 4 3 7 7 C 1.37649 * 120.49017 * 180.02562 * 6 5 4 8 8 C 1.38554 * 120.25288 * 359.89473 * 7 6 5 9 9 C 1.38021 * 120.19124 * 0.06098 * 8 7 6 10 10 O 1.35824 * 119.89799 * 179.97438 * 9 8 7 11 11 C 1.42902 * 117.00279 * 0.02562 * 10 9 8 12 12 C 1.39266 * 110.18482 * 359.97438 * 5 4 3 13 13 C 1.36475 * 124.03197 * 92.56203 * 3 2 1 14 14 C 1.40815 * 123.30287 * 0.03603 * 13 3 2 15 15 H 1.08003 * 120.00200 * 49.49303 * 14 13 3 16 16 C 1.39675 * 119.99949 * 229.48613 * 14 13 3 17 17 N 1.31095 * 119.99893 * 15.80172 * 16 14 13 18 18 Si 1.86798 * 120.00078 * 195.79209 * 16 14 13 19 19 H 1.48505 * 109.47241 * 60.00677 * 18 16 14 20 20 H 1.48502 * 109.47256 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47233 * 300.00456 * 18 16 14 22 22 H 1.09006 * 109.46693 * 59.99828 * 1 2 3 23 23 H 1.08994 * 109.47165 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47237 * 300.00072 * 1 2 3 25 25 H 1.09007 * 109.46557 * 119.99638 * 2 1 3 26 26 H 1.08994 * 109.46821 * 239.99623 * 2 1 3 27 27 H 1.07998 * 119.75899 * 359.97438 * 6 5 4 28 28 H 1.08005 * 119.87856 * 179.97438 * 7 6 5 29 29 H 1.07994 * 119.90414 * 180.02562 * 8 7 6 30 30 H 1.09003 * 109.47094 * 179.97438 * 11 10 9 31 31 H 1.08999 * 109.47163 * 300.00405 * 11 10 9 32 32 H 1.09001 * 109.46401 * 59.99897 * 11 10 9 33 33 H 0.96999 * 119.99771 * 174.47065 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 16 2.2832 2.3412 -1.4069 5 6 2.8281 3.7500 -0.5077 6 6 3.2467 5.0047 -0.9632 7 6 3.6377 5.9770 -0.0707 8 6 3.6186 5.7228 1.2912 9 6 3.2083 4.4919 1.7619 10 8 3.1923 4.2490 3.0981 11 6 3.6123 5.3120 3.9559 12 6 2.8061 3.4854 0.8595 13 6 2.3347 2.1241 1.1299 14 6 2.2092 1.5929 2.4279 15 1 2.6345 0.6276 2.6599 16 6 1.5349 2.3145 3.4157 17 7 0.7612 3.3184 3.0809 18 14 1.7355 1.8489 5.2135 19 1 3.1652 1.9641 5.5982 20 1 0.9209 2.7618 6.0552 21 1 1.2795 0.4503 5.4165 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 3.2640 5.2119 -2.0230 28 1 3.9595 6.9421 -0.4332 29 1 3.9262 6.4898 1.9864 30 1 3.5512 4.9866 4.9944 31 1 4.6409 5.5845 3.7199 32 1 2.9644 6.1759 3.8074 33 1 0.2308 3.7683 3.7571 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396310407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:02 Heat of formation + Delta-G solvation = -21.394774 kcal Electronic energy + Delta-G solvation = -17895.408014 eV Core-core repulsion = 15204.745232 eV Total energy + Delta-G solvation = -2690.662782 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.84342 -38.38104 -36.89349 -34.51072 -33.16411 -30.73624 -29.68527 -28.18855 -27.19352 -24.43630 -23.34882 -22.27158 -20.91650 -19.12734 -18.12410 -17.00036 -16.91729 -16.50251 -16.32815 -16.10914 -15.42891 -15.02994 -14.42666 -14.24687 -14.07866 -13.85880 -13.30217 -13.08495 -13.01165 -12.75166 -12.63971 -12.41920 -12.07162 -11.99769 -11.97925 -11.66725 -11.52599 -11.16525 -11.07607 -10.60295 -9.40303 -8.92180 -8.40044 -7.94596 -6.11054 0.29077 0.61145 1.14474 1.35939 1.39615 1.47862 1.84325 1.98561 2.37697 2.77927 3.00130 3.41973 4.07812 4.16592 4.34851 4.42403 4.44791 4.46757 4.49375 4.67199 4.72896 4.76401 4.80941 5.00737 5.12892 5.33508 5.40990 5.45346 5.51544 5.54965 5.64285 5.76205 5.99985 6.26348 6.52343 6.84813 7.00505 7.22289 8.68561 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.013087 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.549403 B = 2139.088752 C = 3707.673891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.009 4.009 3 C -0.380 4.380 4 S 0.077 5.923 5 C -0.132 4.132 6 C -0.152 4.152 7 C -0.070 4.070 8 C -0.251 4.251 9 C 0.181 3.819 10 O -0.297 6.297 11 C 0.013 3.987 12 C -0.117 4.117 13 C 0.114 3.886 14 C -0.501 4.501 15 H 0.061 0.939 16 C 0.086 3.914 17 N -0.831 5.831 18 Si 0.948 3.052 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.274 1.274 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.029 0.971 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.139 0.861 28 H 0.162 0.838 29 H 0.148 0.852 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 4.670 -1.594 6.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.048 4.048 3 C -0.496 4.496 4 S 0.341 5.659 5 C -0.247 4.247 6 C -0.176 4.176 7 C -0.090 4.090 8 C -0.273 4.273 9 C 0.133 3.867 10 O -0.208 6.208 11 C -0.082 4.082 12 C -0.126 4.126 13 C 0.105 3.895 14 C -0.535 4.535 15 H 0.079 0.921 16 C -0.128 4.128 17 N -0.458 5.458 18 Si 0.771 3.229 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.199 1.199 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.157 0.843 28 H 0.179 0.821 29 H 0.165 0.835 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.386 4.277 -2.888 6.173 hybrid contribution 0.100 0.202 2.612 2.622 sum 3.487 4.479 -0.276 5.683 Atomic orbital electron populations 1.21577 0.95695 1.00723 1.00435 1.19452 0.95219 0.90143 0.99989 1.23446 1.25826 1.04483 0.95831 1.81312 1.72294 1.02889 1.09391 1.22798 1.05810 0.99935 0.96188 1.20578 1.05410 0.91069 1.00520 1.20977 0.97270 0.99218 0.91556 1.21205 1.11797 0.96220 0.98040 1.19017 0.92390 0.92483 0.82855 1.86391 1.80735 1.39646 1.14077 1.23225 0.99974 0.90752 0.94293 1.19260 1.05335 0.96597 0.91408 1.17453 0.89820 0.88386 0.93882 1.18607 1.36355 1.04283 0.94221 0.92138 1.25834 0.92262 0.92361 1.02298 1.69861 1.20256 1.19370 1.36362 0.85817 0.79193 0.78461 0.79391 1.18792 1.19701 1.19884 0.93575 0.91415 0.95205 0.92919 0.92402 0.84281 0.82077 0.83476 0.88507 0.91373 0.92402 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.90 71.98 0.71 -4.37 16 2 C -0.01 -0.37 6.06 29.85 0.18 -0.19 16 3 C -0.38 -18.87 5.56 25.28 0.14 -18.73 16 4 S 0.08 3.36 22.89 -56.49 -1.29 2.06 16 5 C -0.13 -6.04 6.44 22.92 0.15 -5.89 16 6 C -0.15 -5.67 10.06 22.53 0.23 -5.44 16 7 C -0.07 -2.31 10.02 22.21 0.22 -2.09 16 8 C -0.25 -9.27 9.01 22.29 0.20 -9.07 16 9 C 0.18 8.38 6.28 22.90 0.14 8.52 16 10 O -0.30 -13.47 6.29 -91.57 -0.58 -14.04 16 11 C 0.01 0.41 9.81 113.37 1.11 1.53 16 12 C -0.12 -6.00 5.59 -20.17 -0.11 -6.11 16 13 C 0.11 6.24 5.19 -20.88 -0.11 6.13 16 14 C -0.50 -27.84 7.87 23.25 0.18 -27.66 16 15 H 0.06 3.39 7.53 -2.91 -0.02 3.37 16 16 C 0.09 4.51 3.18 85.15 0.27 4.79 16 17 N -0.83 -44.87 11.43 21.79 0.25 -44.62 16 18 Si 0.95 40.85 29.45 68.60 2.02 42.87 16 19 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 2.38 7.23 -2.38 -0.02 2.37 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 28 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 29 H 0.15 4.37 6.24 -2.91 -0.02 4.35 16 30 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.07 1.85 7.65 -2.39 -0.02 1.83 16 32 H 0.06 1.72 7.65 -2.39 -0.02 1.70 16 33 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -63.89 287.77 4.83 -59.06 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.11 Total: 13.25 kcal Atomic # 6 Polarization: -61.90 SS G_CDS: 3.32 Total: -58.58 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.25 Total: -44.62 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.58 Total: -14.04 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.02 Total: 42.87 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.29 Total: 2.06 kcal Total: -63.89 4.83 -59.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396310407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.666 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds