Wall clock time and date at job start Mon Mar 30 2020 06:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47616 * 2 1 4 4 S 1.75497 * 124.67411 * 270.02765 * 3 2 1 5 5 C 1.76051 * 91.57428 * 179.97438 * 4 3 2 6 6 C 1.39601 * 130.56144 * 180.02562 * 5 4 3 7 7 C 1.38160 * 121.46088 * 180.02562 * 6 5 4 8 8 C 1.37611 * 121.09247 * 359.97438 * 7 6 5 9 9 C 1.40355 * 120.12940 * 0.02562 * 8 7 6 10 10 C 1.40565 * 120.40376 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99751 * 149.08539 * 10 9 8 12 12 C 1.39915 * 120.00023 * 329.08553 * 10 9 8 13 13 N 1.30877 * 119.99954 * 162.62283 * 12 10 9 14 14 Si 1.86803 * 120.00022 * 342.62510 * 12 10 9 15 15 H 1.48501 * 109.47068 * 95.34919 * 14 12 10 16 16 H 1.48500 * 109.47127 * 215.34819 * 14 12 10 17 17 H 1.48498 * 109.47165 * 335.35174 * 14 12 10 18 18 C 1.39790 * 109.39435 * 0.02562 * 5 4 3 19 19 C 1.33180 * 124.66693 * 89.72305 * 3 2 1 20 20 O 1.36122 * 122.16438 * 0.04297 * 19 3 2 21 21 C 1.42892 * 117.00035 * 90.01965 * 20 19 3 22 22 H 1.08994 * 109.47621 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46897 * 299.99797 * 1 2 3 24 24 H 1.08996 * 109.46815 * 59.99394 * 1 2 3 25 25 H 1.08997 * 109.47297 * 120.00390 * 2 1 3 26 26 H 1.09004 * 109.46897 * 240.00203 * 2 1 3 27 27 H 1.08006 * 119.27126 * 359.97438 * 6 5 4 28 28 H 1.07996 * 119.44978 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.93321 * 179.97438 * 8 7 6 30 30 H 0.96999 * 119.99825 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.46901 * 179.97438 * 21 20 19 32 32 H 1.08991 * 109.47494 * 300.00459 * 21 20 19 33 33 H 1.09009 * 109.47162 * 60.00633 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3647 2.3623 -1.4433 5 6 2.8561 3.7528 -0.4819 6 6 3.3018 5.0161 -0.8746 7 6 3.6434 5.9809 0.0535 8 6 3.5560 5.7306 1.4038 9 6 3.1146 4.4793 1.8612 10 6 3.0226 4.2176 3.2392 11 1 2.2723 3.5351 3.6103 12 6 3.9029 4.8413 4.1301 13 7 3.6228 4.8795 5.4080 14 14 5.4781 5.6196 3.4956 15 1 5.2560 7.0698 3.2659 16 1 6.5589 5.4369 4.4974 17 1 5.8714 4.9708 2.2190 18 6 2.7466 3.4402 0.8762 19 6 2.2800 2.1367 1.0954 20 8 2.0966 1.6335 2.3468 21 6 3.2099 0.9704 2.9490 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.3820 5.2442 -1.9273 28 1 3.9840 6.9477 -0.2865 29 1 3.8283 6.4983 2.1129 30 1 4.2329 5.3122 6.0255 31 1 2.9296 0.6188 3.9420 32 1 3.5041 0.1213 2.3322 33 1 4.0453 1.6656 3.0325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396311752.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:28 Heat of formation + Delta-G solvation = -12.423069 kcal Electronic energy + Delta-G solvation = -17618.394969 eV Core-core repulsion = 14928.121229 eV Total energy + Delta-G solvation = -2690.273740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.06555 -36.96790 -34.47085 -33.76054 -31.97690 -30.54427 -27.81268 -26.29664 -25.23330 -23.09902 -22.17479 -20.32511 -19.40877 -17.84040 -16.55675 -15.95052 -15.44128 -14.99489 -14.74086 -14.21910 -13.76427 -13.47763 -13.19811 -12.87648 -12.82446 -12.40555 -12.02275 -11.85464 -11.47669 -11.29590 -11.11561 -10.90949 -10.85801 -10.59613 -10.26038 -10.09516 -9.80756 -9.69544 -9.29186 -8.99962 -8.28214 -7.41421 -7.22950 -6.84355 -4.62684 1.62172 2.40805 2.45139 2.80203 2.95222 2.99804 3.18068 3.23530 3.80223 4.25528 4.75954 5.20850 5.30332 5.48417 5.72865 5.81250 5.88535 5.92478 6.04619 6.11437 6.19153 6.29202 6.30980 6.37870 6.50193 6.55048 6.70359 6.87280 6.92712 7.14369 7.29477 7.54654 7.69726 7.79837 8.12053 8.31592 8.46130 8.54147 9.74598 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.021880 B = 0.009072 C = 0.006902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.380665 B = 3085.638870 C = 4055.805103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.030 4.030 3 C -0.268 4.268 4 S 0.034 5.966 5 C -0.059 4.059 6 C -0.236 4.236 7 C -0.035 4.035 8 C -0.267 4.267 9 C 0.134 3.866 10 C -0.402 4.402 11 H 0.112 0.888 12 C 0.080 3.920 13 N -0.780 5.780 14 Si 0.913 3.087 15 H -0.266 1.266 16 H -0.288 1.288 17 H -0.241 1.241 18 C -0.195 4.195 19 C 0.157 3.843 20 O -0.318 6.318 21 C 0.046 3.954 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.291 0.709 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -4.859 -5.333 7.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.383 4.383 4 S 0.296 5.704 5 C -0.174 4.174 6 C -0.261 4.261 7 C -0.057 4.057 8 C -0.288 4.288 9 C 0.129 3.871 10 C -0.428 4.428 11 H 0.130 0.870 12 C -0.143 4.143 13 N -0.401 5.401 14 Si 0.738 3.262 15 H -0.191 1.191 16 H -0.215 1.215 17 H -0.164 1.164 18 C -0.201 4.201 19 C 0.103 3.897 20 O -0.235 6.235 21 C -0.049 4.049 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.322 -5.214 -6.418 8.275 hybrid contribution 0.960 0.789 1.315 1.809 sum 1.282 -4.425 -5.103 6.875 Atomic orbital electron populations 1.21754 0.95311 1.00667 1.02367 1.19714 0.95485 0.90289 1.01459 1.23562 1.18732 1.00986 0.95000 1.83394 1.71878 1.06271 1.08825 1.22045 1.02947 0.97179 0.95199 1.19478 1.16222 0.92833 0.97590 1.20381 0.95499 0.96666 0.93107 1.20720 1.15968 0.97320 0.94842 1.18434 0.87911 0.88870 0.91923 1.19762 1.13353 1.20330 0.89320 0.87029 1.26390 1.00627 0.92759 0.94481 1.69702 1.35584 1.30792 1.04062 0.86252 0.79518 0.80274 0.80134 1.19132 1.21537 1.16358 1.19146 1.13988 0.94654 0.92337 1.17090 0.98111 0.90475 0.84042 1.86002 1.36091 1.74085 1.27308 1.22767 0.90154 0.95167 0.96834 0.93144 0.92179 0.92943 0.91184 0.92165 0.88502 0.88174 0.87721 0.89807 0.89806 0.95050 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.90 37.16 0.37 -1.73 16 2 C -0.03 -0.48 6.22 -27.88 -0.17 -0.66 16 3 C -0.27 -5.29 5.71 -36.07 -0.21 -5.50 16 4 S 0.03 0.67 23.26 -107.50 -2.50 -1.84 16 5 C -0.06 -1.33 6.48 -38.49 -0.25 -1.58 16 6 C -0.24 -5.08 10.02 -39.10 -0.39 -5.47 16 7 C -0.04 -0.76 9.95 -39.84 -0.40 -1.16 16 8 C -0.27 -6.31 7.12 -39.01 -0.28 -6.59 16 9 C 0.13 3.39 5.27 -104.30 -0.55 2.84 16 10 C -0.40 -10.32 8.09 -38.08 -0.31 -10.63 16 11 H 0.11 3.07 6.57 -52.49 -0.34 2.72 16 12 C 0.08 1.96 5.41 -17.33 -0.09 1.87 16 13 N -0.78 -19.21 13.93 55.55 0.77 -18.44 16 14 Si 0.91 19.62 24.52 -169.99 -4.17 15.45 16 15 H -0.27 -5.53 6.73 56.52 0.38 -5.15 16 16 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.24 -5.40 6.85 56.52 0.39 -5.01 16 18 C -0.19 -4.75 6.03 -104.67 -0.63 -5.38 16 19 C 0.16 3.53 5.69 -40.62 -0.23 3.30 16 20 O -0.32 -6.96 8.06 -20.13 -0.16 -7.12 16 21 C 0.05 0.85 10.55 101.05 1.07 1.92 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.09 7.25 -51.93 -0.38 0.72 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 28 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.11 2.41 4.80 -52.49 -0.25 2.16 16 30 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.03 0.50 7.61 -51.93 -0.40 0.11 16 33 H 0.05 1.07 7.61 -51.92 -0.40 0.67 16 LS Contribution 285.84 15.07 4.31 4.31 Total: -1.00 -26.64 285.84 -7.72 -34.36 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.89 Total: 2.04 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: -2.07 Total: -28.77 kcal Atomic # 7 Polarization: -19.21 SS G_CDS: 0.77 Total: -18.44 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.16 Total: -7.12 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.17 Total: 15.45 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.50 Total: -1.84 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.64 -7.72 -34.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396311752.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.935 kcal (2) G-P(sol) polarization free energy of solvation -26.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds