Wall clock time and date at job start Mon Mar 30 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47156 * 2 1 4 4 C 1.37398 * 119.78248 * 266.52053 * 3 2 1 5 5 C 1.38603 * 120.24264 * 179.97438 * 4 3 2 6 6 C 1.37684 * 120.11529 * 0.02562 * 5 4 3 7 7 C 1.39759 * 120.48338 * 359.97438 * 6 5 4 8 8 S 1.75881 * 129.71775 * 180.02562 * 7 6 5 9 9 C 1.75185 * 92.75603 * 180.02562 * 8 7 6 10 10 O 1.35247 * 124.56734 * 179.97438 * 9 8 7 11 11 C 1.42901 * 116.99661 * 0.02562 * 10 9 8 12 12 C 1.37458 * 110.86726 * 359.97438 * 9 8 7 13 13 C 1.40664 * 123.23611 * 179.97438 * 12 9 8 14 14 H 1.08001 * 120.00047 * 141.78558 * 13 12 9 15 15 C 1.39568 * 120.00038 * 321.78572 * 13 12 9 16 16 N 1.31248 * 120.00070 * 343.69493 * 15 13 12 17 17 Si 1.86806 * 119.99676 * 163.69664 * 15 13 12 18 18 H 1.48494 * 109.47394 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47123 * 120.00152 * 17 15 13 20 20 H 1.48501 * 109.46818 * 239.99850 * 17 15 13 21 21 C 1.39324 * 119.65659 * 0.02562 * 7 6 5 22 22 H 1.08996 * 109.47209 * 59.98985 * 1 2 3 23 23 H 1.08996 * 109.47082 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46610 * 299.99787 * 1 2 3 25 25 H 1.09000 * 109.46913 * 240.00667 * 2 1 3 26 26 H 1.08997 * 109.47385 * 120.00253 * 2 1 3 27 27 H 1.07992 * 119.87924 * 0.27602 * 4 3 2 28 28 H 1.07999 * 119.94456 * 179.97438 * 5 4 3 29 29 H 1.08011 * 119.76072 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47553 * 299.99713 * 11 10 9 31 31 H 1.09000 * 109.47123 * 60.00035 * 11 10 9 32 32 H 1.09002 * 109.47357 * 179.97438 * 11 10 9 33 33 H 0.97003 * 119.99920 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3281 2.0401 -1.1903 5 6 2.7902 3.3468 -1.2014 6 6 2.9558 4.0311 -0.0182 7 6 2.6604 3.4182 1.2026 8 16 2.7795 4.0550 2.8377 9 6 2.2066 2.5613 3.5517 10 8 2.0492 2.3563 4.8793 11 6 2.3766 3.4436 5.7469 12 6 1.9387 1.6258 2.5810 13 6 1.4647 0.3326 2.8665 14 1 0.7291 -0.1272 2.2231 15 6 1.9450 -0.3565 3.9811 16 7 3.0457 0.0418 4.5747 17 14 1.0210 -1.8456 4.6281 18 1 -0.1801 -2.0860 3.7888 19 1 1.9062 -3.0369 4.5793 20 1 0.6024 -1.5972 6.0310 21 6 2.1955 2.1049 1.2200 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.1953 1.5085 -2.1209 28 1 3.0216 3.8288 -2.1398 29 1 3.3167 5.0490 -0.0336 30 1 3.4248 3.7114 5.6142 31 1 1.7491 4.3018 5.5066 32 1 2.2052 3.1470 6.7817 33 1 3.3793 -0.4369 5.3497 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396311779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:32 Heat of formation + Delta-G solvation = -0.691008 kcal Electronic energy + Delta-G solvation = -17707.057595 eV Core-core repulsion = 15017.292595 eV Total energy + Delta-G solvation = -2689.765000 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.83047 -37.18238 -34.27602 -33.35426 -32.04470 -28.78118 -28.03011 -26.38362 -25.02115 -22.83413 -22.25650 -20.26951 -19.53880 -17.14426 -16.71287 -15.44634 -15.21126 -14.74239 -14.37060 -14.32440 -13.60907 -13.46322 -12.99655 -12.76156 -12.50296 -12.31159 -11.82548 -11.41136 -11.27755 -11.20808 -10.95905 -10.74184 -10.63657 -10.40094 -10.27949 -9.93345 -9.81648 -9.35259 -9.18030 -8.83679 -8.17292 -7.05964 -6.56298 -6.30962 -4.06253 1.90510 2.02889 2.63311 3.07454 3.19022 3.23191 3.26563 3.77626 4.16755 4.58291 4.73068 5.29264 5.49791 5.51841 5.79841 5.86026 5.92619 5.96759 6.01014 6.14614 6.16813 6.26263 6.32999 6.47345 6.59792 6.82352 6.86072 7.04469 7.09702 7.17444 7.37532 7.42728 7.76105 7.86209 8.52612 8.56255 9.08278 9.09399 10.55249 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.011060 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.200535 B = 2531.061252 C = 3925.687690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.039 4.039 4 C -0.139 4.139 5 C -0.131 4.131 6 C -0.098 4.098 7 C -0.134 4.134 8 S -0.039 6.039 9 C -0.089 4.089 10 O -0.238 6.238 11 C 0.030 3.970 12 C 0.052 3.948 13 C -0.448 4.448 14 H 0.090 0.910 15 C 0.078 3.922 16 N -0.782 5.782 17 Si 0.895 3.105 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.277 1.277 21 C -0.028 4.028 22 H 0.042 0.958 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 2.984 -4.545 5.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 C -0.041 4.041 4 C -0.160 4.160 5 C -0.151 4.151 6 C -0.121 4.121 7 C -0.249 4.249 8 S 0.220 5.780 9 C -0.248 4.248 10 O -0.151 6.151 11 C -0.068 4.068 12 C 0.043 3.957 13 C -0.481 4.481 14 H 0.107 0.893 15 C -0.138 4.138 16 N -0.409 5.409 17 Si 0.721 3.279 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.202 1.202 21 C -0.037 4.037 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.125 0.875 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.813 4.089 -3.561 5.483 hybrid contribution -0.390 -1.538 0.008 1.586 sum -1.203 2.551 -3.553 4.537 Atomic orbital electron populations 1.21732 0.95531 1.00824 1.01762 1.20794 0.95750 0.93213 1.03505 1.19667 0.97615 0.95831 0.90938 1.20622 1.03331 0.95281 0.96771 1.20642 1.02786 0.95101 0.96577 1.20274 1.02407 0.98983 0.90469 1.22076 1.08580 0.98300 0.95983 1.83129 1.76770 1.19665 0.98428 1.22635 1.22228 0.93701 0.86228 1.85942 1.82811 1.34571 1.11757 1.22786 0.99035 0.90381 0.94596 1.16692 1.00126 0.93520 0.85367 1.18870 1.21903 0.98110 1.09236 0.89255 1.25584 0.94036 0.98180 0.96040 1.69929 1.16831 1.37032 1.17144 0.86467 0.80599 0.81317 0.79508 1.18702 1.20608 1.20249 1.19276 0.98368 0.91827 0.94189 0.93906 0.93270 0.91422 0.92941 0.87472 0.86916 0.86816 0.87267 0.94406 0.94762 0.90004 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.05 37.16 0.34 -2.11 16 2 C -0.10 -1.81 5.34 -27.88 -0.15 -1.96 16 3 C -0.04 -0.80 5.19 -103.95 -0.54 -1.34 16 4 C -0.14 -2.48 9.63 -39.75 -0.38 -2.87 16 5 C -0.13 -2.23 10.03 -39.65 -0.40 -2.63 16 6 C -0.10 -1.85 10.06 -39.22 -0.39 -2.25 16 7 C -0.13 -3.01 6.41 -38.61 -0.25 -3.26 16 8 S -0.04 -0.86 21.83 -107.50 -2.35 -3.21 16 9 C -0.09 -2.29 6.61 30.45 0.20 -2.09 16 10 O -0.24 -6.03 8.01 -17.44 -0.14 -6.17 16 11 C 0.03 0.60 10.23 101.05 1.03 1.63 16 12 C 0.05 1.36 5.46 -105.91 -0.58 0.79 16 13 C -0.45 -11.63 6.85 -38.17 -0.26 -11.89 16 14 H 0.09 2.18 4.08 -52.49 -0.21 1.96 16 15 C 0.08 2.02 4.82 -17.31 -0.08 1.93 16 16 N -0.78 -21.07 11.16 55.53 0.62 -20.45 16 17 Si 0.90 19.52 29.59 -169.99 -5.03 14.49 16 18 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 21 C -0.03 -0.66 5.97 -105.17 -0.63 -1.29 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.31 6.83 -51.93 -0.35 0.96 16 25 H 0.05 0.86 8.05 -51.93 -0.42 0.44 16 26 H 0.11 2.30 5.41 -51.93 -0.28 2.02 16 27 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 29 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 30 H 0.04 0.73 8.02 -51.93 -0.42 0.32 16 31 H 0.03 0.63 8.02 -51.93 -0.42 0.21 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 284.87 15.07 4.29 4.29 Total: -1.00 -28.70 284.87 -8.47 -37.17 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.77 Total: 1.20 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -2.09 Total: -27.32 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.62 Total: -20.45 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.14 Total: -6.17 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.35 Total: -3.21 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.70 -8.47 -37.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396311779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.478 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds