Wall clock time and date at job start Mon Mar 30 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47156 * 2 1 4 4 C 1.37398 * 119.78248 * 266.52053 * 3 2 1 5 5 C 1.38603 * 120.24264 * 179.97438 * 4 3 2 6 6 C 1.37684 * 120.11529 * 0.02562 * 5 4 3 7 7 C 1.39759 * 120.48338 * 359.97438 * 6 5 4 8 8 S 1.75881 * 129.71775 * 180.02562 * 7 6 5 9 9 C 1.75185 * 92.75603 * 180.02562 * 8 7 6 10 10 O 1.35247 * 124.56734 * 179.97438 * 9 8 7 11 11 C 1.42901 * 116.99661 * 0.02562 * 10 9 8 12 12 C 1.37458 * 110.86726 * 359.97438 * 9 8 7 13 13 C 1.40664 * 123.23611 * 179.97438 * 12 9 8 14 14 H 1.08001 * 120.00047 * 141.78558 * 13 12 9 15 15 C 1.39568 * 120.00038 * 321.78572 * 13 12 9 16 16 N 1.31248 * 120.00070 * 343.69493 * 15 13 12 17 17 Si 1.86806 * 119.99676 * 163.69664 * 15 13 12 18 18 H 1.48494 * 109.47394 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47123 * 120.00152 * 17 15 13 20 20 H 1.48501 * 109.46818 * 239.99850 * 17 15 13 21 21 C 1.39324 * 119.65659 * 0.02562 * 7 6 5 22 22 H 1.08996 * 109.47209 * 59.98985 * 1 2 3 23 23 H 1.08996 * 109.47082 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46610 * 299.99787 * 1 2 3 25 25 H 1.09000 * 109.46913 * 240.00667 * 2 1 3 26 26 H 1.08997 * 109.47385 * 120.00253 * 2 1 3 27 27 H 1.07992 * 119.87924 * 0.27602 * 4 3 2 28 28 H 1.07999 * 119.94456 * 179.97438 * 5 4 3 29 29 H 1.08011 * 119.76072 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47553 * 299.99713 * 11 10 9 31 31 H 1.09000 * 109.47123 * 60.00035 * 11 10 9 32 32 H 1.09002 * 109.47357 * 179.97438 * 11 10 9 33 33 H 0.97003 * 119.99920 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3281 2.0401 -1.1903 5 6 2.7902 3.3468 -1.2014 6 6 2.9558 4.0311 -0.0182 7 6 2.6604 3.4182 1.2026 8 16 2.7795 4.0550 2.8377 9 6 2.2066 2.5613 3.5517 10 8 2.0492 2.3563 4.8793 11 6 2.3766 3.4436 5.7469 12 6 1.9387 1.6258 2.5810 13 6 1.4647 0.3326 2.8665 14 1 0.7291 -0.1272 2.2231 15 6 1.9450 -0.3565 3.9811 16 7 3.0457 0.0418 4.5747 17 14 1.0210 -1.8456 4.6281 18 1 -0.1801 -2.0860 3.7888 19 1 1.9062 -3.0369 4.5793 20 1 0.6024 -1.5972 6.0310 21 6 2.1955 2.1049 1.2200 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.1953 1.5085 -2.1209 28 1 3.0216 3.8288 -2.1398 29 1 3.3167 5.0490 -0.0336 30 1 3.4248 3.7114 5.6142 31 1 1.7491 4.3018 5.5066 32 1 2.2052 3.1470 6.7817 33 1 3.3793 -0.4369 5.3497 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396311779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:32 Heat of formation + Delta-G solvation = -15.726776 kcal Electronic energy + Delta-G solvation = -17707.709594 eV Core-core repulsion = 15017.292595 eV Total energy + Delta-G solvation = -2690.416999 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39419 -38.94712 -36.00231 -34.85606 -33.81564 -30.28365 -29.66828 -28.10075 -26.73659 -24.33469 -23.88082 -21.84735 -21.23882 -18.90130 -18.45959 -17.02933 -16.82324 -16.49187 -16.10190 -15.89522 -15.19921 -15.02687 -14.54923 -14.33565 -14.11439 -13.89999 -13.36290 -13.03663 -12.90498 -12.79779 -12.57433 -12.38130 -12.23222 -12.03772 -11.88574 -11.52683 -11.41162 -11.01414 -10.90810 -10.65054 -9.77842 -8.72504 -8.43904 -8.10501 -5.98437 0.31165 0.51165 0.95832 1.32125 1.42254 1.43572 1.54563 2.02834 2.36005 2.96026 3.05854 3.43138 4.04152 4.19209 4.36153 4.39164 4.43449 4.46291 4.57877 4.63800 4.72433 4.80152 4.87676 5.02214 5.17307 5.35308 5.36560 5.49924 5.57282 5.60782 5.65723 5.85777 6.04486 6.28019 6.63973 6.75311 7.17195 7.26817 8.67802 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.011060 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.200535 B = 2531.061252 C = 3925.687690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 C -0.057 4.057 4 C -0.130 4.130 5 C -0.113 4.113 6 C -0.106 4.106 7 C -0.157 4.157 8 S -0.024 6.024 9 C -0.118 4.118 10 O -0.270 6.270 11 C 0.027 3.973 12 C 0.021 3.979 13 C -0.466 4.466 14 H 0.095 0.905 15 C 0.036 3.964 16 N -0.821 5.821 17 Si 0.958 3.042 18 H -0.255 1.255 19 H -0.273 1.273 20 H -0.281 1.281 21 C -0.067 4.067 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.152 0.848 28 H 0.162 0.838 29 H 0.135 0.865 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 3.191 -7.169 8.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.130 4.130 3 C -0.059 4.059 4 C -0.151 4.151 5 C -0.133 4.133 6 C -0.129 4.129 7 C -0.271 4.271 8 S 0.234 5.766 9 C -0.277 4.277 10 O -0.183 6.183 11 C -0.070 4.070 12 C 0.011 3.989 13 C -0.499 4.499 14 H 0.113 0.887 15 C -0.177 4.177 16 N -0.450 5.450 17 Si 0.781 3.219 18 H -0.178 1.178 19 H -0.199 1.199 20 H -0.206 1.206 21 C -0.075 4.075 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.170 0.830 28 H 0.180 0.820 29 H 0.153 0.847 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.116 4.300 -6.198 7.626 hybrid contribution -0.276 -1.491 0.654 1.651 sum -1.392 2.809 -5.545 6.370 Atomic orbital electron populations 1.21657 0.94485 1.01800 1.01179 1.20746 0.96649 0.92417 1.03236 1.20010 0.98190 0.96694 0.91014 1.21107 1.01168 0.95755 0.97026 1.21222 0.99794 0.94568 0.97668 1.20696 1.02127 1.00335 0.89777 1.22457 1.09453 0.98331 0.96889 1.82755 1.76977 1.17966 0.98889 1.23001 1.22810 0.95348 0.86509 1.85866 1.83253 1.36980 1.12227 1.22993 0.99132 0.89867 0.95019 1.17231 1.00427 0.94076 0.87129 1.19154 1.22269 0.98615 1.09876 0.88719 1.26325 0.94520 1.00744 0.96090 1.70028 1.18365 1.38706 1.17854 0.85513 0.79634 0.78247 0.78478 1.17802 1.19881 1.20648 1.19477 1.00560 0.93099 0.94363 0.91810 0.91532 0.94521 0.89947 0.90840 0.83028 0.82048 0.84729 0.94567 0.93566 0.87623 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.05 71.98 0.65 -3.80 16 2 C -0.09 -3.42 5.34 29.85 0.16 -3.26 16 3 C -0.06 -2.30 5.19 -19.43 -0.10 -2.40 16 4 C -0.13 -4.11 9.63 22.16 0.21 -3.90 16 5 C -0.11 -3.31 10.03 22.23 0.22 -3.09 16 6 C -0.11 -3.72 10.06 22.51 0.23 -3.49 16 7 C -0.16 -6.95 6.41 22.90 0.15 -6.80 16 8 S -0.02 -1.08 21.83 -56.49 -1.23 -2.31 16 9 C -0.12 -6.33 6.61 67.64 0.45 -5.88 16 10 O -0.27 -14.22 8.01 -85.31 -0.68 -14.90 16 11 C 0.03 1.10 10.23 113.37 1.16 2.26 16 12 C 0.02 1.13 5.46 -20.70 -0.11 1.02 16 13 C -0.47 -25.15 6.85 23.18 0.16 -24.99 16 14 H 0.10 4.80 4.08 -2.91 -0.01 4.79 16 15 C 0.04 1.92 4.82 85.10 0.41 2.33 16 16 N -0.82 -46.11 11.16 21.78 0.24 -45.87 16 17 Si 0.96 41.20 29.59 68.60 2.03 43.23 16 18 H -0.25 -10.42 7.11 99.48 0.71 -9.72 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 C -0.07 -3.21 5.97 -20.22 -0.12 -3.33 16 22 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.04 1.43 6.83 -2.39 -0.02 1.41 16 25 H 0.08 2.46 8.05 -2.39 -0.02 2.44 16 26 H 0.07 3.21 5.41 -2.39 -0.01 3.20 16 27 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 29 H 0.13 3.96 8.06 -2.90 -0.02 3.93 16 30 H 0.04 1.44 8.02 -2.39 -0.02 1.42 16 31 H 0.05 1.72 8.02 -2.39 -0.02 1.70 16 32 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 33 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -65.33 284.87 4.94 -60.39 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.12 Total: 14.78 kcal Atomic # 6 Polarization: -58.78 SS G_CDS: 3.46 Total: -55.32 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.24 Total: -45.87 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.68 Total: -14.90 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -1.23 Total: -2.31 kcal Total: -65.33 4.94 -60.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396311779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.667 kcal (2) G-P(sol) polarization free energy of solvation -65.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds